Wall clock time and date at job start Tue Mar 31 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.47421 * 119.99899 * 2 1 3 5 5 C 1.36934 * 120.00320 * 274.99943 * 4 2 1 6 6 H 1.08005 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00426 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99573 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46986 * 120.00562 * 9 7 5 12 12 H 1.48499 * 109.46871 * 240.00374 * 9 7 5 13 13 C 1.53003 * 109.46933 * 240.00070 * 2 1 3 14 14 H 1.09003 * 110.91506 * 299.17992 * 13 2 1 15 15 C 1.55159 * 111.00239 * 175.27790 * 13 2 1 16 16 C 1.54320 * 102.94018 * 206.42272 * 15 13 2 17 17 N 1.47188 * 107.29632 * 22.28801 * 16 15 13 18 18 C 1.34775 * 125.73575 * 181.02725 * 17 16 15 19 19 O 1.21726 * 119.99599 * 179.86308 * 18 17 16 20 20 C 1.46493 * 120.00150 * 359.85863 * 18 17 16 21 21 C 1.36112 * 125.71248 * 179.71665 * 20 18 17 22 22 C 1.42231 * 107.62807 * 179.88602 * 21 20 18 23 23 C 1.45592 * 140.77888 * 180.02562 * 22 21 20 24 24 C 1.31817 * 114.63035 * 180.32276 * 23 22 21 25 25 S 1.75348 * 111.24355 * 359.97438 * 24 23 22 26 26 C 1.38178 * 106.99223 * 0.37747 * 22 21 20 27 27 N 1.37461 * 108.16901 * 359.76927 * 26 22 21 28 28 H 0.96998 * 125.68158 * 180.02562 * 27 26 22 29 29 C 1.47428 * 108.61319 * 0.90782 * 17 16 15 30 30 H 1.09003 * 109.46903 * 294.77518 * 1 2 3 31 31 H 1.08999 * 109.47207 * 54.77449 * 1 2 3 32 32 H 1.09001 * 109.47301 * 174.77651 * 1 2 3 33 33 H 0.97005 * 119.99940 * 94.99830 * 4 2 1 34 34 H 0.97007 * 119.99491 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.72321 * 324.78697 * 15 13 2 36 36 H 1.08994 * 110.71843 * 88.06171 * 15 13 2 37 37 H 1.09009 * 109.88063 * 141.61196 * 16 15 13 38 38 H 1.08998 * 109.88753 * 262.62333 * 16 15 13 39 39 H 1.07998 * 126.18333 * 0.02562 * 21 20 18 40 40 H 1.07993 * 122.68024 * 0.34160 * 23 22 21 41 41 H 1.07996 * 124.37609 * 179.97438 * 24 23 22 42 42 H 1.08996 * 110.36466 * 217.11944 * 29 17 16 43 43 H 1.09000 * 110.36681 * 94.90015 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6115 -0.6619 3.5092 8 7 2.9245 -1.9390 3.4500 9 14 2.7893 0.2698 5.1185 10 1 2.3744 1.6819 4.9213 11 1 1.9283 -0.3590 6.1522 12 1 4.2061 0.2269 5.5613 13 6 2.0400 -0.7213 -1.2493 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6396 -1.3463 16 6 3.8443 -0.7602 -2.8630 17 7 2.6067 -0.3581 -3.5507 18 6 2.4165 -0.3443 -4.8849 19 8 1.3448 0.0066 -5.3432 20 6 3.4995 -0.7514 -5.7835 21 6 3.4332 -0.7870 -7.1425 22 6 4.6947 -1.2342 -7.6237 23 6 5.3888 -1.5218 -8.8709 24 6 6.6294 -1.9426 -8.7247 25 16 7.0757 -2.0289 -7.0312 26 6 5.4900 -1.4653 -6.5176 27 7 4.7568 -1.1693 -5.3932 28 1 5.0704 -1.2415 -4.4781 29 6 1.6078 0.0247 -2.5363 30 1 -0.3633 0.4307 0.9331 31 1 -0.3633 0.5927 -0.8395 32 1 -0.3634 -1.0234 -0.0936 33 1 2.2491 -1.6318 1.1526 34 1 3.2479 -2.3962 4.2421 35 1 3.9465 0.3175 -0.9688 36 1 4.0506 -1.4666 -0.8091 37 1 4.6601 -0.0984 -3.1540 38 1 4.0949 -1.7905 -3.1156 39 1 2.5782 -0.5212 -7.7464 40 1 4.9244 -1.3997 -9.8382 41 1 7.2860 -2.2008 -9.5424 42 1 0.6125 -0.2957 -2.8443 43 1 1.6255 1.1024 -2.3743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271509795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:24 Heat of formation + Delta-G solvation = 37.546456 kcal Electronic energy + Delta-G solvation = -25581.474333 eV Core-core repulsion = 21946.713085 eV Total energy + Delta-G solvation = -3634.761248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54278 -40.82315 -39.07375 -36.94632 -36.27715 -34.28591 -32.12789 -31.65464 -30.93345 -29.87007 -28.56469 -26.39887 -25.27970 -23.94188 -22.95745 -22.79733 -21.28887 -21.12662 -20.37064 -19.41141 -19.10780 -17.87775 -17.61246 -16.77403 -16.57682 -16.09030 -15.89765 -15.58939 -15.50108 -15.27411 -14.97175 -14.77221 -14.60504 -14.17407 -13.98519 -13.91713 -13.68329 -13.51650 -13.23687 -12.98287 -12.83355 -12.75968 -12.62846 -12.35133 -12.14137 -12.02654 -11.77418 -11.75314 -11.57921 -11.49033 -11.36125 -10.93654 -10.59929 -9.92402 -9.31095 -8.98084 -8.66430 -7.91832 -5.18486 0.07660 0.14346 0.41816 1.07272 1.47865 1.49451 1.57960 1.64223 1.77046 2.10863 2.25724 2.57378 3.18164 3.42139 3.46803 3.57553 3.75833 3.78063 3.98920 4.02465 4.18591 4.21474 4.36468 4.40426 4.53933 4.59072 4.62698 4.67681 4.76296 4.78786 4.86466 4.96504 5.04221 5.13347 5.16482 5.21450 5.27299 5.36041 5.41924 5.55436 5.59749 5.63642 6.07718 6.22980 6.31013 6.82614 7.38011 8.13501 8.36937 9.31609 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.002365 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.963339 B =11837.306637 C =13000.311047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.228 4.228 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.299 1.299 12 H -0.295 1.295 13 C -0.093 4.093 14 H 0.078 0.922 15 C -0.109 4.109 16 C 0.089 3.911 17 N -0.614 5.614 18 C 0.601 3.399 19 O -0.562 6.562 20 C -0.019 4.019 21 C -0.077 4.077 22 C -0.180 4.180 23 C -0.085 4.085 24 C -0.211 4.211 25 S 0.152 5.848 26 C -0.026 4.026 27 N -0.524 5.524 28 H 0.429 0.571 29 C 0.121 3.879 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.203 0.797 42 H 0.078 0.922 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.768 0.429 -25.187 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.193 1.193 11 H -0.226 1.226 12 H -0.222 1.222 13 C -0.113 4.113 14 H 0.096 0.904 15 C -0.147 4.147 16 C -0.034 4.034 17 N -0.346 5.346 18 C 0.391 3.609 19 O -0.442 6.442 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.193 4.193 23 C -0.115 4.115 24 C -0.344 4.344 25 S 0.405 5.595 26 C -0.255 4.255 27 N -0.133 5.133 28 H 0.275 0.725 29 C -0.002 4.002 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.220 0.780 42 H 0.096 0.904 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.479 0.384 -24.464 26.239 hybrid contribution -1.187 0.271 1.127 1.659 sum 8.292 0.656 -23.338 24.776 Atomic orbital electron populations 1.22379 0.98124 1.00912 1.00706 1.20291 0.92419 0.94973 0.84873 0.93217 1.42515 1.78303 1.10284 1.05912 1.19579 1.34168 0.94050 0.88235 0.90826 1.25418 1.03409 0.96789 1.01016 1.69802 1.52942 1.10022 1.29134 0.85207 0.76661 0.78244 0.80477 1.19252 1.22639 1.22219 1.22476 0.95859 0.99848 0.93126 0.90356 1.22484 0.95602 1.03975 0.92605 1.22452 0.86701 1.00600 0.93608 1.48491 1.16147 1.65408 1.04543 1.16778 0.86154 0.77626 0.80317 1.90842 1.26797 1.50602 1.75955 1.19755 0.86072 1.13276 0.94150 1.20910 0.97184 1.01035 0.91450 1.19757 0.95178 1.11360 0.92999 1.20555 0.93760 1.00150 0.97071 1.25323 1.00425 1.09622 0.99041 1.83992 1.04014 1.70982 1.00497 1.24101 1.00875 1.10289 0.90251 1.42113 1.09502 1.53891 1.07796 0.72547 1.22253 0.92278 0.99784 0.85863 0.94452 0.91440 0.93828 0.79460 0.94242 0.90290 0.89814 0.89423 0.89906 0.82293 0.81658 0.78047 0.90398 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.38 9.22 71.98 0.66 -4.72 16 2 C 0.18 6.46 2.40 44.99 0.11 6.57 16 3 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 4 N -0.73 -33.63 4.90 -322.94 -1.58 -35.21 16 5 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 6 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.97 -56.92 13.06 21.65 0.28 -56.63 16 9 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 C -0.09 -2.66 2.64 -9.40 -0.02 -2.68 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.11 -2.76 6.21 31.78 0.20 -2.57 16 16 C 0.09 1.79 5.10 86.70 0.44 2.23 16 17 N -0.61 -15.43 3.33 -816.25 -2.72 -18.15 16 18 C 0.60 17.03 7.82 86.39 0.68 17.71 16 19 O -0.56 -19.46 17.10 -4.43 -0.08 -19.54 16 20 C -0.02 -0.48 6.82 39.81 0.27 -0.20 16 21 C -0.08 -1.82 10.58 22.77 0.24 -1.58 16 22 C -0.18 -3.73 6.80 -20.40 -0.14 -3.87 16 23 C -0.09 -1.24 10.42 23.39 0.24 -0.99 16 24 C -0.21 -2.38 11.03 67.04 0.74 -1.64 16 25 S 0.15 2.13 23.24 -56.49 -1.31 0.81 16 26 C -0.03 -0.51 8.41 83.80 0.70 0.19 16 27 N -0.52 -10.57 5.70 -179.04 -1.02 -11.59 16 28 H 0.43 6.97 4.84 -92.71 -0.45 6.53 16 29 C 0.12 3.17 5.48 86.85 0.48 3.64 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.37 18.59 7.80 -92.70 -0.72 17.86 16 34 H 0.25 14.31 8.31 -92.70 -0.77 13.53 16 35 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 1.44 7.21 -2.38 -0.02 1.42 16 38 H 0.08 1.44 7.08 -2.39 -0.02 1.42 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 43 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -67.38 366.12 1.38 -66.00 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.12 Total: 30.04 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.90 Total: -2.62 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.04 Total: -121.59 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.08 Total: -19.54 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.81 kcal Total: -67.38 1.38 -66.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.545 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds