Wall clock time and date at job start Tue Mar 31 2020 17:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21589 * 120.00476 * 359.97438 * 8 7 6 10 10 C 1.47563 * 119.99753 * 179.97438 * 8 7 6 11 11 C 1.40120 * 120.59037 * 0.02562 * 10 8 7 12 12 N 1.30613 * 121.17264 * 179.97438 * 11 10 8 13 13 C 1.34911 * 122.44716 * 0.02562 * 12 11 10 14 14 C 1.40613 * 128.45936 * 179.97438 * 13 12 11 15 15 C 1.32282 * 115.91157 * 180.02562 * 14 13 12 16 16 S 1.75500 * 110.83608 * 0.02562 * 15 14 13 17 17 C 1.40096 * 119.26934 * 359.97438 * 13 12 11 18 18 C 1.39362 * 119.75368 * 359.74729 * 17 13 12 19 19 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 30 30 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 31 31 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 32 32 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 34 34 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 38 38 H 1.07998 * 119.41122 * 359.94936 * 11 10 8 39 39 H 1.08000 * 122.04362 * 359.97438 * 14 13 12 40 40 H 1.08000 * 124.57991 * 179.97438 * 15 14 13 41 41 H 1.08001 * 120.73425 * 180.28457 * 18 17 13 42 42 H 0.97000 * 119.99792 * 264.99726 * 19 4 2 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1736 -1.0166 1.8876 10 6 5.8753 -1.9952 3.9860 11 6 4.9757 -2.4503 4.9592 12 7 5.3986 -2.9727 6.0791 13 6 6.7101 -3.1050 6.3664 14 6 7.3021 -3.6435 7.5226 15 6 8.6247 -3.6515 7.5446 16 16 9.2778 -2.9611 6.0692 17 6 7.6625 -2.6697 5.4357 18 6 7.2453 -2.1129 4.2282 19 7 1.5517 -0.0306 2.4454 20 6 0.3102 -0.3211 2.9447 21 1 -0.3089 -1.0596 2.4570 22 6 -0.1502 0.3291 4.0815 23 7 0.6044 1.2286 4.6762 24 14 -1.8407 -0.0727 4.7672 25 1 -1.7260 -1.1804 5.7495 26 1 -2.4009 1.1278 5.4382 27 1 -2.7392 -0.4849 3.6590 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.9337 -1.3099 0.4076 36 1 3.9331 0.3032 1.1601 37 1 3.4280 -1.6162 3.1695 38 1 3.9140 -2.3673 4.7801 39 1 6.7130 -4.0264 8.3428 40 1 9.2219 -4.0308 8.3607 41 1 7.9659 -1.7763 3.4975 42 1 2.1078 0.6323 2.8837 43 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271878805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:11 Heat of formation + Delta-G solvation = 27.367230 kcal Electronic energy + Delta-G solvation = -25808.377094 eV Core-core repulsion = 22173.174442 eV Total energy + Delta-G solvation = -3635.202652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.76647 -39.20408 -37.35163 -35.82672 -34.03798 -32.93677 -32.62681 -30.61034 -29.91968 -27.91752 -26.34266 -25.19570 -24.09838 -23.46616 -22.30519 -21.56694 -20.36081 -19.05734 -18.34405 -17.40959 -17.06079 -16.71569 -16.25864 -15.49657 -15.36595 -14.88105 -14.48311 -14.31411 -14.22576 -14.10132 -13.43720 -13.41670 -13.16807 -13.00511 -12.93832 -12.76186 -12.25691 -12.03716 -11.80656 -11.37328 -11.34356 -11.04917 -10.93931 -10.82109 -10.62526 -10.60753 -10.27964 -10.14312 -10.10756 -9.89556 -9.51379 -9.45382 -9.00928 -8.94719 -8.67357 -8.25693 -7.05447 -5.83746 -3.12998 -0.00105 0.89385 1.11095 1.57191 1.71971 2.98785 3.35215 3.39506 3.45435 3.47049 3.74765 3.88177 4.41032 4.52606 4.63720 4.74591 4.82736 4.98933 5.23995 5.36530 5.41299 5.45344 5.49592 5.61383 5.71340 5.77606 5.80634 5.85553 5.89363 6.07360 6.20055 6.26667 6.32410 6.39343 6.53138 6.61021 6.66494 6.77944 6.86300 7.03640 7.32795 7.63937 7.65404 7.77470 8.33001 8.37627 9.45779 9.99513 10.35703 11.37734 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.003125 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.074654 B = 8957.056162 C =10673.041924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.055 0.945 6 C 0.111 3.889 7 N -0.702 5.702 8 C 0.562 3.438 9 O -0.547 6.547 10 C -0.171 4.171 11 C 0.166 3.834 12 N -0.457 5.457 13 C 0.142 3.858 14 C -0.116 4.116 15 C -0.169 4.169 16 S 0.115 5.885 17 C -0.211 4.211 18 C 0.026 3.974 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.173 0.827 39 H 0.155 0.845 40 H 0.177 0.823 41 H 0.152 0.848 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.548 -8.931 0.764 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.056 3.944 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.353 5.353 8 C 0.347 3.653 9 O -0.427 6.427 10 C -0.179 4.179 11 C -0.006 4.006 12 N -0.165 5.165 13 C 0.008 3.992 14 C -0.147 4.147 15 C -0.306 4.306 16 S 0.378 5.622 17 C -0.328 4.328 18 C -0.004 4.004 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.575 5.575 24 Si 0.732 3.268 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.248 0.752 38 H 0.190 0.810 39 H 0.172 0.828 40 H 0.195 0.805 41 H 0.169 0.831 42 H 0.220 0.780 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.843 -8.796 0.413 18.126 hybrid contribution -1.989 0.040 0.814 2.150 sum 13.854 -8.755 1.226 16.434 Atomic orbital electron populations 1.21834 0.94963 1.00860 1.02112 1.21613 0.96836 0.96563 0.97872 1.21801 0.99669 0.96782 1.01699 1.20560 0.89136 0.96083 0.88589 0.92756 1.21844 0.95892 0.98670 0.84911 1.45903 1.06113 1.61641 1.21624 1.17774 0.82957 0.79009 0.85543 1.90759 1.55569 1.50022 1.46348 1.20979 0.94344 1.05016 0.97606 1.23063 1.00500 0.90027 0.87039 1.67639 1.14602 1.14318 1.19989 1.19302 0.89180 0.97113 0.93577 1.19679 0.94097 1.02653 0.98224 1.25394 0.97998 1.05016 1.02144 1.84260 1.03396 1.62888 1.11696 1.23522 0.98891 1.09627 1.00777 1.20951 0.95312 0.90908 0.93262 1.42438 1.18078 1.47507 1.28031 1.19179 0.92887 1.18253 1.06618 0.90920 1.24705 0.98203 0.99159 0.98406 1.69652 1.36889 1.28970 1.22017 0.86294 0.84333 0.77201 0.78967 1.21726 1.21940 1.20790 0.94131 0.89327 0.95024 0.93239 0.93656 0.94298 0.91221 0.91631 0.90980 0.75203 0.80985 0.82751 0.80541 0.83054 0.78027 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.26 37.16 0.31 -2.14 16 2 C -0.11 -1.75 2.80 -90.62 -0.25 -2.01 16 3 C -0.14 -2.34 8.69 37.16 0.32 -2.01 16 4 C 0.17 2.90 2.35 -67.93 -0.16 2.74 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.78 5.01 -4.04 -0.02 1.76 16 7 N -0.70 -11.12 5.34 -61.33 -0.33 -11.45 16 8 C 0.56 9.15 7.77 -12.46 -0.10 9.06 16 9 O -0.55 -10.22 16.41 5.29 0.09 -10.14 16 10 C -0.17 -2.50 5.89 -104.87 -0.62 -3.12 16 11 C 0.17 2.41 10.69 -17.36 -0.19 2.22 16 12 N -0.46 -6.88 10.39 -11.01 -0.11 -7.00 16 13 C 0.14 1.91 6.97 -84.92 -0.59 1.31 16 14 C -0.12 -1.19 10.16 -40.61 -0.41 -1.60 16 15 C -0.17 -1.36 11.08 28.81 0.32 -1.04 16 16 S 0.11 1.07 23.29 -107.50 -2.50 -1.44 16 17 C -0.21 -2.66 6.49 -38.47 -0.25 -2.91 16 18 C 0.03 0.35 9.73 -38.65 -0.38 -0.03 16 19 N -0.72 -15.31 3.67 -53.42 -0.20 -15.51 16 20 C -0.24 -5.75 7.57 -15.06 -0.11 -5.87 16 21 H 0.07 1.73 7.40 -52.49 -0.39 1.34 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -25.88 13.06 55.49 0.72 -25.15 16 24 Si 0.90 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.70 6.32 -51.93 -0.33 0.37 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 37 H 0.41 6.45 6.19 -40.82 -0.25 6.20 16 38 H 0.17 2.34 6.41 -52.49 -0.34 2.01 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.15 1.88 7.72 -52.49 -0.41 1.48 16 42 H 0.39 9.09 7.80 -40.82 -0.32 8.77 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -29.14 366.83 -9.62 -38.76 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.57 Total: 14.29 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.22 Total: -3.93 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.09 Total: -59.11 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.14 -9.62 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271878805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.128 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds