Wall clock time and date at job start Tue Mar 31 2020 17:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21589 * 120.00476 * 359.97438 * 8 7 6 10 10 C 1.47563 * 119.99753 * 179.97438 * 8 7 6 11 11 C 1.40120 * 120.59037 * 0.02562 * 10 8 7 12 12 N 1.30613 * 121.17264 * 179.97438 * 11 10 8 13 13 C 1.34911 * 122.44716 * 0.02562 * 12 11 10 14 14 C 1.40613 * 128.45936 * 179.97438 * 13 12 11 15 15 C 1.32282 * 115.91157 * 180.02562 * 14 13 12 16 16 S 1.75500 * 110.83608 * 0.02562 * 15 14 13 17 17 C 1.40096 * 119.26934 * 359.97438 * 13 12 11 18 18 C 1.39362 * 119.75368 * 359.74729 * 17 13 12 19 19 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 30 30 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 31 31 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 32 32 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 34 34 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 38 38 H 1.07998 * 119.41122 * 359.94936 * 11 10 8 39 39 H 1.08000 * 122.04362 * 359.97438 * 14 13 12 40 40 H 1.08000 * 124.57991 * 179.97438 * 15 14 13 41 41 H 1.08001 * 120.73425 * 180.28457 * 18 17 13 42 42 H 0.97000 * 119.99792 * 264.99726 * 19 4 2 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1736 -1.0166 1.8876 10 6 5.8753 -1.9952 3.9860 11 6 4.9757 -2.4503 4.9592 12 7 5.3986 -2.9727 6.0791 13 6 6.7101 -3.1050 6.3664 14 6 7.3021 -3.6435 7.5226 15 6 8.6247 -3.6515 7.5446 16 16 9.2778 -2.9611 6.0692 17 6 7.6625 -2.6697 5.4357 18 6 7.2453 -2.1129 4.2282 19 7 1.5517 -0.0306 2.4454 20 6 0.3102 -0.3211 2.9447 21 1 -0.3089 -1.0596 2.4570 22 6 -0.1502 0.3291 4.0815 23 7 0.6044 1.2286 4.6762 24 14 -1.8407 -0.0727 4.7672 25 1 -1.7260 -1.1804 5.7495 26 1 -2.4009 1.1278 5.4382 27 1 -2.7392 -0.4849 3.6590 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.9337 -1.3099 0.4076 36 1 3.9331 0.3032 1.1601 37 1 3.4280 -1.6162 3.1695 38 1 3.9140 -2.3673 4.7801 39 1 6.7130 -4.0264 8.3428 40 1 9.2219 -4.0308 8.3607 41 1 7.9659 -1.7763 3.4975 42 1 2.1078 0.6323 2.8837 43 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271878805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:08 Heat of formation + Delta-G solvation = 9.397149 kcal Electronic energy + Delta-G solvation = -25809.156335 eV Core-core repulsion = 22173.174442 eV Total energy + Delta-G solvation = -3635.981894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83065 -40.43735 -38.80868 -36.73991 -35.39872 -34.70969 -33.68374 -32.05059 -31.23729 -29.32425 -27.72720 -26.30845 -25.51528 -24.80967 -23.60155 -22.61543 -21.50795 -20.37953 -19.58382 -19.07617 -18.20245 -17.79414 -17.22385 -16.81824 -16.73890 -16.28810 -15.91536 -15.58854 -15.42514 -15.12003 -14.98302 -14.68780 -14.56676 -14.27828 -14.00704 -13.81313 -13.61347 -13.39469 -12.87837 -12.84638 -12.77021 -12.63207 -12.41568 -12.15112 -12.10954 -11.92772 -11.87011 -11.62694 -11.43664 -11.26124 -11.14790 -10.80523 -10.57592 -10.14437 -9.80888 -9.05817 -8.90514 -7.83231 -5.08820 -0.96595 -0.13918 0.28537 0.79761 0.83491 1.51740 1.53920 1.59650 1.82991 2.11966 2.63109 2.65257 2.95442 3.47271 3.50692 3.56522 3.66354 3.89812 3.95108 3.96856 4.06824 4.30392 4.36784 4.39149 4.46440 4.63563 4.70748 4.74276 4.80308 4.89978 4.98408 5.01292 5.04023 5.14769 5.24269 5.27145 5.31050 5.35356 5.51280 5.62616 5.67691 5.86236 6.36764 6.46183 6.61799 7.08153 7.45881 8.17672 8.42562 9.39353 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.003125 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.074654 B = 8957.056162 C =10673.041924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.168 3.832 5 H 0.059 0.941 6 C 0.118 3.882 7 N -0.701 5.701 8 C 0.566 3.434 9 O -0.575 6.575 10 C -0.190 4.190 11 C 0.161 3.839 12 N -0.483 5.483 13 C 0.130 3.870 14 C -0.145 4.145 15 C -0.137 4.137 16 S 0.156 5.844 17 C -0.235 4.235 18 C 0.029 3.971 19 N -0.721 5.721 20 C -0.210 4.210 21 H 0.079 0.921 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.952 3.048 25 H -0.292 1.292 26 H -0.307 1.307 27 H -0.272 1.272 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.410 0.590 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.221 0.779 41 H 0.158 0.842 42 H 0.373 0.627 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.205 -10.583 0.434 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.059 3.941 5 H 0.077 0.923 6 C -0.006 4.006 7 N -0.351 5.351 8 C 0.352 3.648 9 O -0.456 6.456 10 C -0.198 4.198 11 C -0.011 4.011 12 N -0.192 5.192 13 C -0.004 4.004 14 C -0.175 4.175 15 C -0.273 4.273 16 S 0.419 5.581 17 C -0.351 4.351 18 C -0.001 4.001 19 N -0.362 5.362 20 C -0.342 4.342 21 H 0.097 0.903 22 C -0.261 4.261 23 N -0.617 5.617 24 Si 0.784 3.216 25 H -0.220 1.220 26 H -0.235 1.235 27 H -0.197 1.197 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.189 0.811 39 H 0.186 0.814 40 H 0.237 0.763 41 H 0.176 0.824 42 H 0.206 0.794 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.494 -10.488 0.035 20.397 hybrid contribution -2.327 0.470 0.899 2.539 sum 15.167 -10.018 0.934 18.201 Atomic orbital electron populations 1.21753 0.95559 1.00892 1.01179 1.21580 0.96224 0.96573 0.98184 1.21724 1.00181 0.96640 1.00786 1.20714 0.89988 0.95828 0.87564 0.92268 1.21765 0.94706 0.98505 0.85624 1.45888 1.06171 1.61446 1.21602 1.17956 0.82671 0.78376 0.85750 1.90730 1.56080 1.51448 1.47376 1.20790 0.95088 1.06805 0.97153 1.23024 1.00522 0.90314 0.87225 1.67614 1.16051 1.15321 1.20219 1.19860 0.88801 0.96938 0.94829 1.19856 0.95159 1.04430 0.98035 1.25959 0.97396 1.01815 1.02156 1.84193 1.00536 1.61786 1.11545 1.23793 1.01172 1.09738 1.00443 1.21081 0.94936 0.90288 0.93810 1.42512 1.17110 1.47359 1.29196 1.19447 0.93332 1.16236 1.05177 0.90287 1.25259 1.00844 1.00254 0.99715 1.69792 1.38272 1.31004 1.22601 0.85448 0.81728 0.76085 0.78361 1.22004 1.23501 1.19707 0.93548 0.93027 0.93169 0.90152 0.92800 0.92607 0.94655 0.89863 0.92000 0.75199 0.81138 0.81412 0.76281 0.82421 0.79446 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.26 71.98 0.59 -3.92 16 2 C -0.10 -3.21 2.80 -10.79 -0.03 -3.24 16 3 C -0.14 -4.32 8.69 71.98 0.63 -3.69 16 4 C 0.17 5.67 2.35 44.99 0.11 5.78 16 5 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.70 5.01 86.38 0.43 4.14 16 7 N -0.70 -22.47 5.34 -466.22 -2.49 -24.96 16 8 C 0.57 18.77 7.77 86.70 0.67 19.44 16 9 O -0.57 -21.61 16.41 -4.00 -0.07 -21.68 16 10 C -0.19 -5.72 5.89 -20.03 -0.12 -5.84 16 11 C 0.16 4.88 10.69 85.33 0.91 5.79 16 12 N -0.48 -14.87 10.39 -188.74 -1.96 -16.83 16 13 C 0.13 3.42 6.97 39.70 0.28 3.69 16 14 C -0.15 -2.69 10.16 21.79 0.22 -2.47 16 15 C -0.14 -1.69 11.08 66.76 0.74 -0.95 16 16 S 0.16 2.46 23.29 -56.49 -1.32 1.15 16 17 C -0.23 -5.70 6.49 22.99 0.15 -5.56 16 18 C 0.03 0.78 9.73 22.88 0.22 1.00 16 19 N -0.72 -31.06 3.67 -322.93 -1.19 -32.25 16 20 C -0.21 -10.18 7.57 84.04 0.64 -9.55 16 21 H 0.08 3.70 7.40 -2.91 -0.02 3.68 16 22 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 23 N -0.97 -55.73 13.06 21.65 0.28 -55.45 16 24 Si 0.95 44.15 29.55 68.60 2.03 46.18 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.60 6.32 -2.39 -0.02 1.58 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.03 1.35 7.60 -2.39 -0.02 1.34 16 35 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 2.10 6.17 -2.39 -0.01 2.08 16 37 H 0.41 13.25 6.19 -92.71 -0.57 12.67 16 38 H 0.17 4.95 6.41 -2.91 -0.02 4.93 16 39 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.16 3.91 7.72 -2.91 -0.02 3.89 16 42 H 0.37 18.11 7.80 -92.71 -0.72 17.39 16 43 H 0.24 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -64.49 366.83 0.96 -63.53 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.24 Total: 38.83 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.91 Total: 1.48 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.36 Total: -129.49 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.07 Total: -21.68 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.15 kcal Total: -64.49 0.96 -63.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271878805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.922 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds