Wall clock time and date at job start Tue Mar 31 2020 17:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21592 * 120.00329 * 0.02562 * 8 7 6 10 10 C 1.47556 * 120.00158 * 180.02562 * 8 7 6 11 11 C 1.40122 * 120.58723 * 359.97438 * 10 8 7 12 12 N 1.30612 * 121.17555 * 179.97438 * 11 10 8 13 13 C 1.34911 * 122.44287 * 0.02562 * 12 11 10 14 14 C 1.40620 * 128.45773 * 179.97438 * 13 12 11 15 15 C 1.32282 * 115.91050 * 180.02562 * 14 13 12 16 16 S 1.75513 * 110.83635 * 359.97438 * 15 14 13 17 17 C 1.40092 * 119.27390 * 359.97438 * 13 12 11 18 18 C 1.39366 * 119.75285 * 359.74452 * 17 13 12 19 19 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 29 29 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 30 30 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 32 32 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 34 34 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 35 35 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 36 36 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 37 37 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 38 38 H 1.07999 * 119.41337 * 359.96368 * 11 10 8 39 39 H 1.08001 * 122.04590 * 359.97438 * 14 13 12 40 40 H 1.07998 * 124.58370 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.73660 * 180.27768 * 18 17 13 42 42 H 0.97004 * 119.99747 * 95.00774 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1736 -1.1249 1.8253 10 6 5.8753 -2.4537 3.7213 11 6 4.9758 -3.0699 4.6013 12 7 5.3985 -3.7796 5.6131 13 6 6.7100 -3.9615 5.8718 14 6 7.3020 -4.6935 6.9163 15 6 8.6247 -4.7069 6.9355 16 16 9.2778 -3.7724 5.6010 17 6 7.6624 -3.3723 5.0302 18 6 7.2453 -2.6135 3.9382 19 7 1.5517 -2.1025 1.2491 20 6 0.3102 -2.3897 1.7504 21 1 -0.3092 -1.5980 2.1454 22 6 -0.1524 -3.6985 1.7509 23 7 0.6002 -4.6626 1.2645 24 14 -1.8463 -4.0903 2.4340 25 1 -2.1036 -5.5479 2.3138 26 1 -1.9075 -3.6930 3.8636 27 1 -2.8744 -3.3413 1.6677 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9331 -1.1563 0.3175 36 1 3.9337 0.3018 1.3383 37 1 3.4281 -1.9369 2.9842 38 1 3.9139 -2.9559 4.4403 39 1 6.7130 -5.2124 7.6580 40 1 9.2219 -5.2230 7.6726 41 1 7.9658 -2.1559 3.2765 42 1 2.1078 -2.8135 0.8941 43 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271878806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:18 Heat of formation + Delta-G solvation = 25.944003 kcal Electronic energy + Delta-G solvation = -25747.181061 eV Core-core repulsion = 22111.916693 eV Total energy + Delta-G solvation = -3635.264368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.81931 -39.27486 -37.40076 -35.86845 -34.12190 -33.46932 -32.67655 -30.70499 -29.93420 -27.90653 -26.15463 -25.18315 -24.07679 -23.39317 -22.25635 -21.58424 -20.45488 -19.52168 -18.55077 -17.52290 -17.20178 -16.80393 -16.31605 -15.58168 -15.36095 -14.90058 -14.64840 -14.38548 -14.30619 -13.90470 -13.68779 -13.55573 -13.40422 -13.08185 -12.98777 -12.80020 -12.30168 -12.04461 -11.88874 -11.68849 -11.40451 -11.25978 -10.98048 -10.81231 -10.66607 -10.49779 -10.18727 -10.15146 -10.06596 -9.91819 -9.52245 -9.24079 -9.06794 -8.95160 -8.76529 -8.29232 -7.13656 -6.14872 -3.17596 -0.04589 0.84737 1.07579 1.53843 1.67861 2.92446 3.27242 3.48931 3.50749 3.68659 3.69031 3.83794 4.36963 4.57626 4.60852 4.68828 4.78852 4.93418 5.17294 5.23919 5.29187 5.42242 5.46022 5.54999 5.57847 5.68523 5.73158 5.77038 5.84474 5.88558 6.06446 6.13487 6.21558 6.27266 6.33828 6.43128 6.52878 6.54786 6.76237 6.96817 7.24116 7.59068 7.68463 7.75525 8.28725 8.68416 9.12204 9.99223 10.13675 11.31717 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003147 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.144610 B = 8895.222379 C =10772.054448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.112 3.888 7 N -0.704 5.704 8 C 0.562 3.438 9 O -0.546 6.546 10 C -0.173 4.173 11 C 0.165 3.835 12 N -0.456 5.456 13 C 0.143 3.857 14 C -0.116 4.116 15 C -0.168 4.168 16 S 0.116 5.884 17 C -0.212 4.212 18 C 0.027 3.973 19 N -0.733 5.733 20 C -0.330 4.330 21 H 0.068 0.932 22 C -0.040 4.040 23 N -0.939 5.939 24 Si 1.074 2.926 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.296 1.296 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.172 0.828 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.152 0.848 42 H 0.368 0.632 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.467 4.728 8.653 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.012 4.012 7 N -0.355 5.355 8 C 0.347 3.653 9 O -0.425 6.425 10 C -0.181 4.181 11 C -0.007 4.007 12 N -0.164 5.164 13 C 0.009 3.991 14 C -0.147 4.147 15 C -0.305 4.305 16 S 0.379 5.621 17 C -0.329 4.329 18 C -0.003 4.003 19 N -0.376 5.376 20 C -0.461 4.461 21 H 0.086 0.914 22 C -0.238 4.238 23 N -0.584 5.584 24 Si 0.905 3.095 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.223 1.223 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.189 0.811 39 H 0.173 0.827 40 H 0.195 0.805 41 H 0.170 0.830 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.687 3.898 8.678 17.499 hybrid contribution 0.036 0.914 -0.308 0.965 sum 14.723 4.812 8.369 17.606 Atomic orbital electron populations 1.21811 0.94728 1.04003 0.99019 1.21715 0.97112 0.94451 0.99770 1.21944 1.00449 0.97264 1.01066 1.20498 0.88938 0.87819 0.96308 0.92591 1.21840 0.95903 0.95009 0.88492 1.45918 1.06173 1.52462 1.30994 1.17794 0.82895 0.80490 0.84074 1.90763 1.55531 1.49092 1.47152 1.20959 0.94396 1.03515 0.99275 1.23039 1.00422 0.89393 0.87856 1.67640 1.14638 1.15253 1.18913 1.19312 0.89145 0.96218 0.94401 1.19686 0.94107 1.01575 0.99304 1.25407 0.97994 1.04286 1.02769 1.84272 1.03295 1.50866 1.23655 1.23528 0.98970 1.07571 1.02796 1.20950 0.95265 0.91455 0.92648 1.42484 1.18386 1.01966 1.74739 1.19973 0.93696 0.95221 1.37183 0.91423 1.25680 1.05602 0.91470 1.01088 1.70898 1.11374 1.33297 1.42850 0.83316 0.74565 0.76085 0.75513 1.21151 1.22230 1.22300 0.94011 0.94990 0.89441 0.92046 0.93054 0.93459 0.93105 0.91645 0.91099 0.75276 0.81122 0.82688 0.80482 0.83033 0.79880 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 2 C -0.11 -1.80 2.69 -90.62 -0.24 -2.05 16 3 C -0.15 -2.04 8.84 37.15 0.33 -1.71 16 4 C 0.17 3.09 2.18 -67.93 -0.15 2.94 16 5 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 6 C 0.11 1.80 4.73 -4.04 -0.02 1.78 16 7 N -0.70 -11.19 5.34 -61.34 -0.33 -11.51 16 8 C 0.56 9.13 7.77 -12.46 -0.10 9.03 16 9 O -0.55 -10.15 16.41 5.28 0.09 -10.07 16 10 C -0.17 -2.52 5.89 -104.87 -0.62 -3.14 16 11 C 0.16 2.40 10.69 -17.36 -0.19 2.21 16 12 N -0.46 -6.86 10.39 -11.01 -0.11 -6.97 16 13 C 0.14 1.91 6.97 -84.92 -0.59 1.32 16 14 C -0.12 -1.18 10.16 -40.61 -0.41 -1.60 16 15 C -0.17 -1.33 11.08 28.81 0.32 -1.01 16 16 S 0.12 1.07 23.29 -107.50 -2.50 -1.44 16 17 C -0.21 -2.65 6.49 -38.47 -0.25 -2.90 16 18 C 0.03 0.36 9.73 -38.64 -0.38 -0.01 16 19 N -0.73 -15.94 4.44 -53.43 -0.24 -16.18 16 20 C -0.33 -8.17 7.57 -15.06 -0.11 -8.28 16 21 H 0.07 1.67 7.39 -52.48 -0.39 1.28 16 22 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 23 N -0.94 -27.22 13.70 55.49 0.76 -26.46 16 24 Si 1.07 24.55 29.92 -169.99 -5.09 19.46 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 37 H 0.41 6.50 6.19 -40.82 -0.25 6.24 16 38 H 0.17 2.33 6.41 -52.49 -0.34 2.00 16 39 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.15 1.87 7.72 -52.49 -0.41 1.47 16 42 H 0.37 8.58 6.63 -40.82 -0.27 8.31 16 43 H 0.26 7.32 6.77 -40.82 -0.28 7.04 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -30.36 366.78 -9.62 -39.98 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.53 Total: 14.38 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.20 Total: -6.72 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.08 Total: -61.12 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.36 -9.62 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271878806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.924 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds