Wall clock time and date at job start Tue Mar 31 2020 17:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21592 * 120.00329 * 0.02562 * 8 7 6 10 10 C 1.47556 * 120.00158 * 180.02562 * 8 7 6 11 11 C 1.40122 * 120.58723 * 359.97438 * 10 8 7 12 12 N 1.30612 * 121.17555 * 179.97438 * 11 10 8 13 13 C 1.34911 * 122.44287 * 0.02562 * 12 11 10 14 14 C 1.40620 * 128.45773 * 179.97438 * 13 12 11 15 15 C 1.32282 * 115.91050 * 180.02562 * 14 13 12 16 16 S 1.75513 * 110.83635 * 359.97438 * 15 14 13 17 17 C 1.40092 * 119.27390 * 359.97438 * 13 12 11 18 18 C 1.39366 * 119.75285 * 359.74452 * 17 13 12 19 19 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 29 29 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 30 30 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 32 32 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 34 34 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 35 35 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 36 36 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 37 37 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 38 38 H 1.07999 * 119.41337 * 359.96368 * 11 10 8 39 39 H 1.08001 * 122.04590 * 359.97438 * 14 13 12 40 40 H 1.07998 * 124.58370 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.73660 * 180.27768 * 18 17 13 42 42 H 0.97004 * 119.99747 * 95.00774 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1736 -1.1249 1.8253 10 6 5.8753 -2.4537 3.7213 11 6 4.9758 -3.0699 4.6013 12 7 5.3985 -3.7796 5.6131 13 6 6.7100 -3.9615 5.8718 14 6 7.3020 -4.6935 6.9163 15 6 8.6247 -4.7069 6.9355 16 16 9.2778 -3.7724 5.6010 17 6 7.6624 -3.3723 5.0302 18 6 7.2453 -2.6135 3.9382 19 7 1.5517 -2.1025 1.2491 20 6 0.3102 -2.3897 1.7504 21 1 -0.3092 -1.5980 2.1454 22 6 -0.1524 -3.6985 1.7509 23 7 0.6002 -4.6626 1.2645 24 14 -1.8463 -4.0903 2.4340 25 1 -2.1036 -5.5479 2.3138 26 1 -1.9075 -3.6930 3.8636 27 1 -2.8744 -3.3413 1.6677 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9331 -1.1563 0.3175 36 1 3.9337 0.3018 1.3383 37 1 3.4281 -1.9369 2.9842 38 1 3.9139 -2.9559 4.4403 39 1 6.7130 -5.2124 7.6580 40 1 9.2219 -5.2230 7.6726 41 1 7.9658 -2.1559 3.2765 42 1 2.1078 -2.8135 0.8941 43 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271878806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:15 Heat of formation + Delta-G solvation = 6.736251 kcal Electronic energy + Delta-G solvation = -25748.013972 eV Core-core repulsion = 22111.916693 eV Total energy + Delta-G solvation = -3636.097279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88852 -40.51228 -38.87826 -36.77946 -35.54118 -35.18461 -33.73268 -32.15474 -31.23908 -29.32618 -27.45962 -26.29665 -25.47943 -24.81641 -23.57343 -22.66797 -21.61428 -20.87662 -19.74412 -19.28865 -18.30588 -17.86055 -17.28782 -16.87560 -16.72744 -16.39369 -16.06810 -15.53458 -15.49445 -15.32132 -15.05654 -14.95487 -14.54824 -14.29182 -14.06059 -13.72667 -13.62006 -13.53639 -12.89857 -12.85658 -12.81483 -12.65552 -12.47390 -12.15351 -11.97748 -11.91812 -11.67021 -11.57553 -11.49434 -11.39137 -11.14999 -10.80430 -10.62527 -10.24795 -9.86854 -9.08734 -9.04031 -8.24016 -5.20072 -1.01142 -0.18491 0.25358 0.76996 0.79442 1.63205 1.70834 1.76404 1.86224 2.02200 2.59845 2.76485 2.90650 3.43036 3.48312 3.51657 3.59776 3.72664 3.80117 3.89559 4.01241 4.22052 4.24066 4.34487 4.37621 4.56489 4.61178 4.66213 4.71523 4.86498 4.87534 4.91472 4.99833 5.01237 5.10594 5.19179 5.21699 5.25680 5.40886 5.57938 5.71371 5.75880 6.35884 6.57048 6.60596 6.98434 7.16661 8.06805 8.19227 9.26124 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003147 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.144610 B = 8895.222379 C =10772.054448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.177 3.823 5 H 0.057 0.943 6 C 0.120 3.880 7 N -0.703 5.703 8 C 0.566 3.434 9 O -0.573 6.573 10 C -0.192 4.192 11 C 0.160 3.840 12 N -0.483 5.483 13 C 0.131 3.869 14 C -0.145 4.145 15 C -0.135 4.135 16 S 0.158 5.842 17 C -0.235 4.235 18 C 0.030 3.970 19 N -0.739 5.739 20 C -0.303 4.303 21 H 0.071 0.929 22 C -0.100 4.100 23 N -0.979 5.979 24 Si 1.115 2.885 25 H -0.302 1.302 26 H -0.278 1.278 27 H -0.283 1.283 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.409 0.591 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.221 0.779 41 H 0.159 0.841 42 H 0.358 0.642 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.986 5.755 10.107 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.068 3.932 5 H 0.075 0.925 6 C -0.004 4.004 7 N -0.354 5.354 8 C 0.353 3.647 9 O -0.454 6.454 10 C -0.200 4.200 11 C -0.012 4.012 12 N -0.191 5.191 13 C -0.003 4.003 14 C -0.175 4.175 15 C -0.272 4.272 16 S 0.422 5.578 17 C -0.352 4.352 18 C 0.000 4.000 19 N -0.381 5.381 20 C -0.434 4.434 21 H 0.089 0.911 22 C -0.292 4.292 23 N -0.628 5.628 24 Si 0.942 3.058 25 H -0.229 1.229 26 H -0.205 1.205 27 H -0.209 1.209 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.247 0.753 38 H 0.186 0.814 39 H 0.187 0.813 40 H 0.238 0.762 41 H 0.176 0.824 42 H 0.190 0.810 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.215 4.990 10.140 19.764 hybrid contribution -0.262 0.631 -0.693 0.973 sum 15.953 5.622 9.446 19.374 Atomic orbital electron populations 1.21717 0.95415 1.01699 1.00248 1.21616 0.96418 0.96439 0.98257 1.21854 1.01001 0.94759 1.02250 1.20636 0.89912 0.85703 0.96934 0.92517 1.21741 0.94568 0.95873 0.88200 1.45900 1.06273 1.52402 1.30821 1.17981 0.82559 0.80043 0.84100 1.90734 1.56013 1.50405 1.48258 1.20759 0.95157 1.04800 0.99319 1.22984 1.00404 0.89695 0.88108 1.67613 1.16120 1.16035 1.19342 1.19873 0.88747 0.96379 0.95329 1.19863 0.95176 1.02891 0.99579 1.25977 0.97382 1.01810 1.02018 1.84205 1.00393 1.49959 1.23255 1.23802 1.01272 1.07566 1.02546 1.21082 0.94858 0.91099 0.92920 1.42595 1.17488 1.03535 1.74466 1.20188 0.94172 0.94776 1.34310 0.91077 1.26748 1.08046 0.92079 1.02329 1.70998 1.11549 1.34240 1.46012 0.82761 0.71996 0.74956 0.76069 1.22920 1.20470 1.20914 0.93521 0.93046 0.93344 0.93189 0.92135 0.92014 0.92204 0.92715 0.89353 0.75316 0.81380 0.81345 0.76196 0.82364 0.80978 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.26 71.98 0.59 -4.00 16 2 C -0.11 -3.40 2.69 -10.80 -0.03 -3.43 16 3 C -0.14 -3.48 8.84 71.98 0.64 -2.85 16 4 C 0.18 6.21 2.18 44.99 0.10 6.30 16 5 H 0.06 2.01 8.08 -2.38 -0.02 2.00 16 6 C 0.12 3.87 4.73 86.38 0.41 4.28 16 7 N -0.70 -22.87 5.34 -466.24 -2.49 -25.36 16 8 C 0.57 18.87 7.77 86.70 0.67 19.54 16 9 O -0.57 -21.56 16.41 -4.01 -0.07 -21.63 16 10 C -0.19 -5.79 5.89 -20.03 -0.12 -5.91 16 11 C 0.16 4.88 10.69 85.33 0.91 5.79 16 12 N -0.48 -14.86 10.39 -188.73 -1.96 -16.82 16 13 C 0.13 3.43 6.97 39.70 0.28 3.71 16 14 C -0.15 -2.67 10.16 21.79 0.22 -2.45 16 15 C -0.14 -1.64 11.08 66.76 0.74 -0.90 16 16 S 0.16 2.46 23.29 -56.49 -1.32 1.15 16 17 C -0.23 -5.68 6.49 22.99 0.15 -5.53 16 18 C 0.03 0.82 9.73 22.88 0.22 1.04 16 19 N -0.74 -32.81 4.44 -322.94 -1.43 -34.24 16 20 C -0.30 -15.15 7.57 84.03 0.64 -14.52 16 21 H 0.07 3.48 7.39 -2.91 -0.02 3.46 16 22 C -0.10 -5.45 5.50 84.86 0.47 -4.99 16 23 N -0.98 -58.68 13.70 21.65 0.30 -58.39 16 24 Si 1.11 50.19 29.92 68.60 2.05 52.24 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 2.05 6.01 -2.39 -0.01 2.03 16 31 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.40 6.55 -2.39 -0.02 1.38 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.56 6.71 -2.39 -0.02 2.54 16 37 H 0.41 13.48 6.19 -92.71 -0.57 12.90 16 38 H 0.17 4.94 6.41 -2.91 -0.02 4.92 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.16 3.90 7.72 -2.91 -0.02 3.88 16 42 H 0.36 17.38 6.63 -92.71 -0.61 16.76 16 43 H 0.24 14.58 6.77 -92.71 -0.63 13.95 16 Total: -1.00 -67.38 366.78 0.98 -66.39 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: 0.01 Total: 40.56 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.89 Total: -3.90 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.59 Total: -134.81 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.07 Total: -21.63 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.15 kcal Total: -67.38 0.98 -66.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271878806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.130 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds