Wall clock time and date at job start Tue Mar 31 2020 16:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28062 * 124.23575 * 2 1 4 4 C 1.34414 * 117.91238 * 180.02562 * 3 2 1 5 5 C 1.41240 * 129.47976 * 179.97438 * 4 3 2 6 6 C 1.35752 * 120.63393 * 180.02562 * 5 4 3 7 7 C 1.40197 * 120.61545 * 359.97438 * 6 5 4 8 8 C 1.47598 * 120.12500 * 179.97438 * 7 6 5 9 9 O 1.21583 * 120.00080 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99996 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47452 * 324.99846 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99768 * 11 10 8 14 14 C 1.52997 * 109.47007 * 204.99627 * 11 10 8 15 15 C 1.53001 * 109.47328 * 65.00131 * 14 11 10 16 16 N 1.46496 * 109.47207 * 179.97438 * 15 14 11 17 17 C 1.36936 * 119.99586 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00829 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47011 * 120.00506 * 21 19 17 24 24 H 1.48502 * 109.47221 * 240.00152 * 21 19 17 25 25 C 1.39178 * 119.74890 * 0.23454 * 7 6 5 26 26 C 1.38911 * 119.84587 * 359.50990 * 25 7 6 27 27 S 1.70640 * 124.24285 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46790 * 269.95474 * 1 2 3 29 29 H 1.08992 * 109.47539 * 29.95698 * 1 2 3 30 30 H 1.08998 * 109.46903 * 149.95953 * 1 2 3 31 31 H 1.07992 * 119.68497 * 0.03976 * 5 4 3 32 32 H 1.08002 * 119.69289 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00095 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47050 * 299.99945 * 13 11 10 36 36 H 1.09001 * 109.46801 * 60.00058 * 13 11 10 37 37 H 1.09002 * 109.47196 * 184.99891 * 14 11 10 38 38 H 1.09001 * 109.47630 * 304.99986 * 14 11 10 39 39 H 1.09002 * 109.46786 * 300.00010 * 15 14 11 40 40 H 1.09001 * 109.46883 * 59.99398 * 15 14 11 41 41 H 0.96999 * 120.00300 * 0.02562 * 16 15 14 42 42 H 0.97004 * 119.99514 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.07752 * 179.72475 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5635 0.9107 -0.0005 5 6 4.5761 1.8953 -0.0011 6 6 5.8863 1.5401 -0.0021 7 6 6.2597 0.1887 -0.0021 8 6 7.6875 -0.1853 -0.0037 9 8 8.0088 -1.3579 -0.0041 10 7 8.6352 0.7731 -0.0048 11 6 10.0523 0.4018 -0.0059 12 1 10.1910 -0.5044 0.5837 13 6 10.5126 0.1504 -1.4433 14 6 10.8775 1.5375 0.6026 15 6 10.5043 1.7058 2.0768 16 7 11.2949 2.7928 2.6596 17 6 11.1309 3.1284 3.9770 18 1 10.4191 2.5916 4.5866 19 6 11.8803 4.1581 4.5294 20 7 12.7482 4.8121 3.7867 21 14 11.6571 4.6155 6.3267 22 1 10.6282 3.7359 6.9373 23 1 12.9455 4.4435 7.0449 24 1 11.2199 6.0311 6.4267 25 6 5.2789 -0.7987 -0.0059 26 6 3.9369 -0.4402 0.0006 27 16 2.4672 -1.4106 -0.0006 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 4.3055 2.9408 -0.0006 32 1 6.6482 2.3056 -0.0030 33 1 8.3789 1.7086 -0.0049 34 1 11.5671 -0.1253 -1.4441 35 1 9.9247 -0.6586 -1.8768 36 1 10.3739 1.0567 -2.0329 37 1 11.9382 1.2999 0.5212 38 1 10.6706 2.4642 0.0673 39 1 9.4436 1.9434 2.1582 40 1 10.7112 0.7791 2.6121 41 1 11.9339 3.2753 2.1121 42 1 13.2716 5.5318 4.1727 43 1 5.5606 -1.8414 -0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273103800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:01 Heat of formation + Delta-G solvation = 22.027142 kcal Electronic energy + Delta-G solvation = -24838.328578 eV Core-core repulsion = 21202.894362 eV Total energy + Delta-G solvation = -3635.434216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -40.94802 -39.78224 -37.29010 -36.43751 -34.40500 -32.55163 -31.71182 -31.47594 -30.65696 -28.62335 -27.88557 -24.72821 -24.18387 -23.51704 -21.83536 -21.58039 -20.89329 -20.39128 -19.02159 -17.84732 -17.06442 -16.52655 -16.15817 -15.67168 -15.57217 -15.06456 -14.61822 -14.50650 -14.30520 -13.97419 -13.72478 -13.59964 -13.48524 -13.40507 -13.33701 -12.87893 -12.82590 -12.63229 -12.44865 -11.89775 -11.72239 -11.27538 -11.20989 -11.04733 -10.81676 -10.66693 -10.57788 -10.55882 -10.06530 -10.03179 -10.00305 -9.71880 -9.15260 -8.94858 -8.87365 -8.49841 -6.93909 -5.78264 -3.06954 -0.21484 0.79195 0.80093 1.28953 1.64437 2.78529 3.08137 3.42291 3.42569 3.48605 3.50710 3.52054 4.19647 4.46578 4.50250 4.56821 4.73078 4.77245 4.89445 4.92649 4.94304 5.11518 5.22122 5.32848 5.37603 5.45311 5.53894 5.67101 5.70944 5.73717 5.78120 5.87993 5.91165 6.01143 6.18325 6.23145 6.26054 6.31571 6.48706 6.79281 6.84111 7.19605 7.46319 7.69788 8.13632 8.40826 9.52073 10.09477 10.44118 11.44670 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.002426 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.390726 B =11540.607583 C =13097.210375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 N -0.472 5.472 4 C 0.106 3.894 5 C -0.069 4.069 6 C -0.074 4.074 7 C -0.116 4.116 8 C 0.562 3.438 9 O -0.538 6.538 10 N -0.711 5.711 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.161 4.161 14 C -0.136 4.136 15 C 0.153 3.847 16 N -0.734 5.734 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.005 4.005 26 C -0.197 4.197 27 S 0.111 5.889 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.359 -11.138 -13.710 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 N -0.186 5.186 4 C -0.016 4.016 5 C -0.090 4.090 6 C -0.095 4.095 7 C -0.123 4.123 8 C 0.348 3.652 9 O -0.417 6.417 10 N -0.362 5.362 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.028 4.028 26 C -0.315 4.315 27 S 0.367 5.633 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.238 0.762 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.740 -12.532 -13.532 29.279 hybrid contribution 0.662 1.721 0.906 2.055 sum -22.078 -10.811 -12.626 27.636 Atomic orbital electron populations 1.20600 0.84615 1.04704 1.04503 1.26875 1.01987 0.90951 0.99181 1.66164 1.04129 1.31288 1.17014 1.19328 0.89154 0.91703 1.01385 1.20296 0.90128 0.98850 0.99733 1.20888 0.96245 0.95277 0.97098 1.19912 0.93434 0.93635 1.05314 1.17969 0.84968 0.85707 0.76539 1.90778 1.82771 1.18013 1.50106 1.46038 1.06478 1.09577 1.74113 1.21036 0.78812 0.99365 0.96733 0.89112 1.22168 1.01701 1.01860 0.96223 1.22079 1.00244 0.97407 0.97645 1.20642 0.94680 0.91970 0.90147 1.42370 1.47202 1.38424 1.09817 1.19274 1.17876 1.12876 0.86922 0.91194 1.24750 0.99167 0.99001 0.98173 1.69672 1.28012 1.25433 1.35133 0.86118 0.77274 0.77937 0.84896 1.20547 1.21828 1.21846 1.20404 0.88119 1.00493 0.93797 1.23733 0.98809 0.96772 1.12207 1.83993 0.95305 1.10181 1.73785 0.88921 0.88802 0.89585 0.83967 0.84019 0.76242 0.91381 0.92350 0.92447 0.90064 0.91289 0.96387 0.96368 0.78307 0.93567 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.44 36.01 0.38 -0.01 16 2 C 0.09 0.82 7.29 -13.85 -0.10 0.72 16 3 N -0.47 -5.36 10.56 -8.96 -0.09 -5.46 16 4 C 0.11 1.24 7.00 -84.88 -0.59 0.65 16 5 C -0.07 -0.72 10.03 -39.33 -0.39 -1.11 16 6 C -0.07 -0.74 9.44 -39.74 -0.38 -1.11 16 7 C -0.12 -1.37 5.87 -104.99 -0.62 -1.99 16 8 C 0.56 7.62 7.73 -12.44 -0.10 7.53 16 9 O -0.54 -8.90 16.00 5.29 0.08 -8.82 16 10 N -0.71 -8.72 4.48 -54.83 -0.25 -8.96 16 11 C 0.14 1.90 2.57 -67.93 -0.17 1.73 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 13 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 14 C -0.14 -2.02 4.87 -26.73 -0.13 -2.15 16 15 C 0.15 3.01 6.15 -4.04 -0.02 2.99 16 16 N -0.73 -18.44 5.60 -59.91 -0.34 -18.78 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 C -0.01 -0.06 9.62 -38.98 -0.37 -0.43 16 26 C -0.20 -2.22 6.54 -38.61 -0.25 -2.47 16 27 S 0.11 0.96 23.11 -107.50 -2.48 -1.53 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 1.11 6.38 -52.49 -0.33 0.77 16 33 H 0.40 4.20 6.62 -40.82 -0.27 3.93 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.36 7.75 -51.93 -0.40 -0.05 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.15 1.64 7.64 -52.49 -0.40 1.24 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -34.49 377.31 -10.23 -44.72 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.89 Total: 7.63 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.65 Total: -4.53 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.05 Total: -60.66 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.48 Total: -1.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.49 -10.23 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273103800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.745 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds