Wall clock time and date at job start Tue Mar 31 2020 16:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28062 * 124.23575 * 2 1 4 4 C 1.34414 * 117.91238 * 180.02562 * 3 2 1 5 5 C 1.41240 * 129.47976 * 179.97438 * 4 3 2 6 6 C 1.35752 * 120.63393 * 180.02562 * 5 4 3 7 7 C 1.40197 * 120.61545 * 359.97438 * 6 5 4 8 8 C 1.47598 * 120.12500 * 179.97438 * 7 6 5 9 9 O 1.21583 * 120.00080 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99996 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47452 * 324.99846 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99768 * 11 10 8 14 14 C 1.52997 * 109.47007 * 204.99627 * 11 10 8 15 15 C 1.53001 * 109.47328 * 65.00131 * 14 11 10 16 16 N 1.46496 * 109.47207 * 179.97438 * 15 14 11 17 17 C 1.36936 * 119.99586 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00829 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47011 * 120.00506 * 21 19 17 24 24 H 1.48502 * 109.47221 * 240.00152 * 21 19 17 25 25 C 1.39178 * 119.74890 * 0.23454 * 7 6 5 26 26 C 1.38911 * 119.84587 * 359.50990 * 25 7 6 27 27 S 1.70640 * 124.24285 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46790 * 269.95474 * 1 2 3 29 29 H 1.08992 * 109.47539 * 29.95698 * 1 2 3 30 30 H 1.08998 * 109.46903 * 149.95953 * 1 2 3 31 31 H 1.07992 * 119.68497 * 0.03976 * 5 4 3 32 32 H 1.08002 * 119.69289 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00095 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47050 * 299.99945 * 13 11 10 36 36 H 1.09001 * 109.46801 * 60.00058 * 13 11 10 37 37 H 1.09002 * 109.47196 * 184.99891 * 14 11 10 38 38 H 1.09001 * 109.47630 * 304.99986 * 14 11 10 39 39 H 1.09002 * 109.46786 * 300.00010 * 15 14 11 40 40 H 1.09001 * 109.46883 * 59.99398 * 15 14 11 41 41 H 0.96999 * 120.00300 * 0.02562 * 16 15 14 42 42 H 0.97004 * 119.99514 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.07752 * 179.72475 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5635 0.9107 -0.0005 5 6 4.5761 1.8953 -0.0011 6 6 5.8863 1.5401 -0.0021 7 6 6.2597 0.1887 -0.0021 8 6 7.6875 -0.1853 -0.0037 9 8 8.0088 -1.3579 -0.0041 10 7 8.6352 0.7731 -0.0048 11 6 10.0523 0.4018 -0.0059 12 1 10.1910 -0.5044 0.5837 13 6 10.5126 0.1504 -1.4433 14 6 10.8775 1.5375 0.6026 15 6 10.5043 1.7058 2.0768 16 7 11.2949 2.7928 2.6596 17 6 11.1309 3.1284 3.9770 18 1 10.4191 2.5916 4.5866 19 6 11.8803 4.1581 4.5294 20 7 12.7482 4.8121 3.7867 21 14 11.6571 4.6155 6.3267 22 1 10.6282 3.7359 6.9373 23 1 12.9455 4.4435 7.0449 24 1 11.2199 6.0311 6.4267 25 6 5.2789 -0.7987 -0.0059 26 6 3.9369 -0.4402 0.0006 27 16 2.4672 -1.4106 -0.0006 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 4.3055 2.9408 -0.0006 32 1 6.6482 2.3056 -0.0030 33 1 8.3789 1.7086 -0.0049 34 1 11.5671 -0.1253 -1.4441 35 1 9.9247 -0.6586 -1.8768 36 1 10.3739 1.0567 -2.0329 37 1 11.9382 1.2999 0.5212 38 1 10.6706 2.4642 0.0673 39 1 9.4436 1.9434 2.1582 40 1 10.7112 0.7791 2.6121 41 1 11.9339 3.2753 2.1121 42 1 13.2716 5.5318 4.1727 43 1 5.5606 -1.8414 -0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273103800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:58 Heat of formation + Delta-G solvation = -0.529145 kcal Electronic energy + Delta-G solvation = -24839.306692 eV Core-core repulsion = 21202.894362 eV Total energy + Delta-G solvation = -3636.412330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.79976 -40.76625 -38.22947 -37.62741 -36.13585 -33.78380 -32.92870 -32.34599 -31.86125 -29.54833 -29.23335 -25.93908 -25.43030 -24.59804 -23.22156 -22.50766 -22.04273 -21.37927 -19.86458 -19.22234 -18.60697 -17.58351 -16.97547 -16.70603 -16.52628 -16.34690 -15.97520 -15.59971 -15.46111 -15.18702 -15.09144 -14.90023 -14.45415 -14.32063 -14.15792 -14.06117 -13.66297 -13.55131 -13.12321 -13.10398 -12.91497 -12.88140 -12.47907 -12.38829 -12.23402 -12.03133 -11.99349 -11.91586 -11.64028 -11.33162 -11.14161 -10.95674 -10.78170 -10.20204 -9.75310 -9.27013 -9.00858 -7.96870 -5.25411 -1.01206 -0.02061 0.08292 0.55705 0.82461 1.46862 1.47256 1.57417 1.85169 2.07342 2.54631 2.62811 2.77754 3.36953 3.42247 3.52800 3.66769 3.83987 3.96552 4.02799 4.06582 4.16108 4.26609 4.39373 4.56462 4.57477 4.63988 4.65127 4.67409 4.78315 4.83422 4.87456 4.95396 5.02195 5.05779 5.12744 5.21113 5.28252 5.34420 5.41787 5.48461 5.53543 6.26190 6.45674 6.46548 7.11036 7.32832 8.08123 8.32164 9.26528 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.002426 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.390726 B =11540.607583 C =13097.210375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.099 3.901 3 N -0.503 5.503 4 C 0.094 3.906 5 C -0.077 4.077 6 C -0.066 4.066 7 C -0.131 4.131 8 C 0.562 3.438 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.152 3.848 12 H 0.072 0.928 13 C -0.153 4.153 14 C -0.119 4.119 15 C 0.152 3.848 16 N -0.745 5.745 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.074 4.074 20 N -0.966 5.966 21 Si 0.971 3.029 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.290 1.290 25 C -0.010 4.010 26 C -0.222 4.222 27 S 0.142 5.858 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.412 0.588 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.006 0.994 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.105 -11.036 -13.968 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 N -0.218 5.218 4 C -0.028 4.028 5 C -0.097 4.097 6 C -0.088 4.088 7 C -0.138 4.138 8 C 0.350 3.650 9 O -0.455 6.455 10 N -0.355 5.355 11 C 0.047 3.953 12 H 0.090 0.910 13 C -0.212 4.212 14 C -0.157 4.157 15 C 0.026 3.974 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.266 4.266 20 N -0.617 5.617 21 Si 0.800 3.200 22 H -0.194 1.194 23 H -0.220 1.220 24 H -0.217 1.217 25 C -0.033 4.033 26 C -0.340 4.340 27 S 0.399 5.601 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.250 0.750 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.024 0.976 41 H 0.208 0.792 42 H 0.061 0.939 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.515 -12.447 -13.802 30.764 hybrid contribution 1.069 1.604 0.968 2.157 sum -23.446 -10.843 -12.834 28.844 Atomic orbital electron populations 1.20846 0.81697 1.06140 1.05874 1.27659 1.03637 0.90473 0.96670 1.66253 1.04019 1.32418 1.19119 1.19679 0.89860 0.92180 1.01073 1.20538 0.90001 0.99563 0.99625 1.21056 0.96761 0.94859 0.96117 1.19825 0.92332 0.94612 1.07005 1.18208 0.85750 0.85255 0.75739 1.90754 1.83388 1.19447 1.51959 1.45973 1.06034 1.10016 1.73521 1.20894 0.79042 0.97706 0.97676 0.90998 1.22092 1.02114 1.02310 0.94642 1.21912 1.00628 0.98683 0.94499 1.20782 0.94203 0.89667 0.92775 1.42555 1.47652 1.39489 1.09083 1.19613 1.17300 1.12505 0.88315 0.91169 1.25539 0.99410 0.99430 1.02231 1.69807 1.29083 1.26055 1.36764 0.85111 0.77163 0.77556 0.80159 1.19401 1.21975 1.21715 1.20432 0.88599 1.00378 0.93890 1.23941 0.99503 0.97615 1.12950 1.83849 0.93690 1.09468 1.73109 0.87363 0.88279 0.87185 0.82358 0.81919 0.75037 0.90350 0.93083 0.90954 0.89884 0.89986 0.95795 0.97561 0.79159 0.93908 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.44 71.24 0.74 0.17 16 2 C 0.10 1.57 7.29 88.66 0.65 2.22 16 3 N -0.50 -10.94 10.56 -182.20 -1.92 -12.86 16 4 C 0.09 2.15 7.00 39.95 0.28 2.43 16 5 C -0.08 -1.53 10.03 22.43 0.23 -1.30 16 6 C -0.07 -1.27 9.44 22.17 0.21 -1.07 16 7 C -0.13 -3.09 5.87 -20.11 -0.12 -3.21 16 8 C 0.56 15.27 7.73 86.71 0.67 15.94 16 9 O -0.57 -19.41 16.00 -3.98 -0.06 -19.47 16 10 N -0.70 -16.67 4.48 -445.65 -2.00 -18.67 16 11 C 0.15 3.84 2.57 44.99 0.12 3.96 16 12 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 13 C -0.15 -3.23 9.48 71.98 0.68 -2.55 16 14 C -0.12 -3.41 4.87 30.59 0.15 -3.26 16 15 C 0.15 5.91 6.15 86.38 0.53 6.44 16 16 N -0.74 -37.31 5.60 -343.45 -1.92 -39.23 16 17 C -0.25 -13.76 9.99 84.04 0.84 -12.92 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 20 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 21 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 C -0.01 -0.24 9.62 22.66 0.22 -0.02 16 26 C -0.22 -4.94 6.54 22.90 0.15 -4.79 16 27 S 0.14 2.29 23.11 -56.49 -1.31 0.98 16 28 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.16 2.27 6.38 -2.91 -0.02 2.25 16 33 H 0.41 7.97 6.62 -92.71 -0.61 7.36 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.38 19.70 7.67 -92.71 -0.71 18.99 16 42 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 43 H 0.14 3.33 7.64 -2.91 -0.02 3.30 16 Total: -1.00 -74.08 377.31 0.63 -73.45 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.27 Total: 27.56 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.81 Total: -1.71 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -5.56 Total: -129.03 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.47 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.31 Total: 0.98 kcal Total: -74.08 0.63 -73.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273103800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.921 kcal (2) G-P(sol) polarization free energy of solvation -74.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds