Wall clock time and date at job start Tue Mar 31 2020 16:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28054 * 124.24175 * 2 1 4 4 C 1.34412 * 117.91957 * 179.97438 * 3 2 1 5 5 C 1.41248 * 129.49011 * 180.02562 * 4 3 2 6 6 C 1.35750 * 120.63996 * 179.97438 * 5 4 3 7 7 C 1.40201 * 120.61184 * 0.02562 * 6 5 4 8 8 C 1.47588 * 120.12052 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99684 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00367 * 0.26696 * 8 7 6 11 11 C 1.46500 * 120.00431 * 179.72716 * 10 8 7 12 12 H 1.09002 * 109.46905 * 34.99910 * 11 10 8 13 13 C 1.53008 * 109.46837 * 275.00470 * 11 10 8 14 14 C 1.52995 * 109.47327 * 155.00306 * 11 10 8 15 15 C 1.53002 * 109.47042 * 294.99752 * 14 11 10 16 16 N 1.46496 * 109.47088 * 180.02562 * 15 14 11 17 17 C 1.36940 * 119.99986 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99922 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99614 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00044 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47367 * 89.99967 * 21 19 17 23 23 H 1.48500 * 109.47109 * 210.00251 * 21 19 17 24 24 H 1.48507 * 109.47242 * 329.99987 * 21 19 17 25 25 C 1.39173 * 119.74888 * 0.24920 * 7 6 5 26 26 C 1.38914 * 119.84689 * 359.45297 * 25 7 6 27 27 S 1.70649 * 124.24131 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47737 * 90.02236 * 1 2 3 29 29 H 1.09002 * 109.47349 * 210.02735 * 1 2 3 30 30 H 1.09001 * 109.47172 * 330.02217 * 1 2 3 31 31 H 1.08003 * 119.67584 * 359.93645 * 5 4 3 32 32 H 1.07993 * 119.69210 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00112 * 359.73154 * 10 8 7 34 34 H 1.08991 * 109.47246 * 60.00048 * 13 11 10 35 35 H 1.09004 * 109.46414 * 179.97438 * 13 11 10 36 36 H 1.08994 * 109.47203 * 299.99450 * 13 11 10 37 37 H 1.08994 * 109.47294 * 55.00438 * 14 11 10 38 38 H 1.09007 * 109.46880 * 175.00499 * 14 11 10 39 39 H 1.09003 * 109.47380 * 300.00505 * 15 14 11 40 40 H 1.09002 * 109.46668 * 60.00131 * 15 14 11 41 41 H 0.97004 * 119.99872 * 0.02562 * 16 15 14 42 42 H 0.97006 * 119.99713 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.07516 * 179.73126 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5634 0.9106 0.0005 5 6 4.5763 1.8951 0.0011 6 6 5.8864 1.5398 0.0021 7 6 6.2597 0.1884 0.0021 8 6 7.6874 -0.1857 0.0026 9 8 8.0085 -1.3584 0.0030 10 7 8.6351 0.7725 0.0086 11 6 10.0523 0.4013 0.0152 12 1 10.1933 -0.5044 -0.5748 13 6 10.5065 0.1483 1.4542 14 6 10.8800 1.5375 -0.5887 15 6 10.5129 1.7073 -2.0643 16 7 11.3060 2.7948 -2.6427 17 6 11.1475 3.1318 -3.9605 18 1 10.4376 2.5961 -4.5732 19 6 11.8993 4.1620 -4.5087 20 7 11.7466 4.4862 -5.7752 21 14 13.1277 5.0880 -3.4490 22 1 14.4503 4.4170 -3.5230 23 1 13.2525 6.4837 -3.9408 24 1 12.6567 5.0998 -2.0407 25 6 5.2788 -0.7989 -0.0043 26 6 3.9368 -0.4403 0.0009 27 16 2.4671 -1.4107 0.0006 28 1 -0.3635 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3056 2.9407 0.0002 32 1 6.6483 2.3052 0.0022 33 1 8.3789 1.7081 0.0086 34 1 9.9169 -0.6611 1.8844 35 1 11.5608 -0.1283 1.4590 36 1 10.3655 1.0539 2.0442 37 1 10.6710 2.4635 -0.0534 38 1 11.9403 1.2997 -0.5032 39 1 10.7220 0.7811 -2.5997 40 1 9.4526 1.9450 -2.1499 41 1 11.9433 3.2762 -2.0922 42 1 12.2717 5.2063 -6.1582 43 1 5.5604 -1.8415 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273103801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:12 Heat of formation + Delta-G solvation = 26.489350 kcal Electronic energy + Delta-G solvation = -24880.185825 eV Core-core repulsion = 21244.945105 eV Total energy + Delta-G solvation = -3635.240720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.96197 -39.81821 -37.32810 -36.52791 -34.56574 -32.57252 -31.75907 -31.50548 -30.87077 -28.68637 -28.27200 -24.74378 -24.18972 -23.45454 -21.78382 -21.45995 -21.02293 -20.44018 -19.04248 -17.93701 -17.46635 -16.60218 -16.19061 -15.69928 -15.58173 -15.09295 -14.61938 -14.46878 -14.31266 -14.14517 -13.90363 -13.64696 -13.53589 -13.46389 -13.34966 -12.87183 -12.66160 -12.62985 -12.61096 -12.07251 -11.75315 -11.54611 -11.28751 -11.24965 -10.91709 -10.77054 -10.56427 -10.54762 -10.16809 -10.08158 -10.03183 -9.61011 -9.19927 -8.96835 -8.90092 -8.50600 -7.25652 -5.78211 -3.14272 -0.22289 0.78394 0.79784 1.28646 1.63396 2.76580 3.03137 3.34809 3.37737 3.41925 3.43424 3.50260 4.18988 4.43915 4.49114 4.57081 4.69947 4.74901 4.78795 4.89295 4.94542 5.07712 5.13699 5.22272 5.37587 5.44348 5.47689 5.58292 5.60377 5.68201 5.75233 5.77308 5.86295 5.89650 5.92347 6.11082 6.18615 6.19637 6.41862 6.67764 6.72371 7.19342 7.41013 7.98093 8.09485 8.40592 9.19538 9.91619 10.11190 11.40194 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002378 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.565772 B =11771.299941 C =12981.112629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 N -0.472 5.472 4 C 0.106 3.894 5 C -0.069 4.069 6 C -0.073 4.073 7 C -0.117 4.117 8 C 0.563 3.437 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.145 3.855 12 H 0.093 0.907 13 C -0.161 4.161 14 C -0.140 4.140 15 C 0.157 3.843 16 N -0.757 5.757 17 C -0.245 4.245 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.004 4.004 26 C -0.197 4.197 27 S 0.112 5.888 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.402 0.598 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.360 0.640 42 H 0.260 0.740 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.260 -10.551 18.260 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.189 4.189 3 N -0.186 5.186 4 C -0.015 4.015 5 C -0.090 4.090 6 C -0.095 4.095 7 C -0.124 4.124 8 C 0.349 3.651 9 O -0.415 6.415 10 N -0.364 5.364 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.178 4.178 15 C 0.030 3.970 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.027 4.027 26 C -0.316 4.316 27 S 0.368 5.632 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.238 0.762 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.667 -11.945 18.013 29.904 hybrid contribution 1.420 2.005 0.519 2.511 sum -19.246 -9.940 18.533 28.507 Atomic orbital electron populations 1.20603 0.84604 1.04703 1.04533 1.26876 1.01995 0.90941 0.99118 1.66158 1.04121 1.31297 1.17034 1.19329 0.89162 0.91697 1.01312 1.20298 0.90128 0.98861 0.99710 1.20871 0.96236 0.95240 0.97158 1.19888 0.93370 0.93648 1.05478 1.17968 0.84981 0.85675 0.76445 1.90784 1.82776 1.17992 1.49997 1.46020 1.06406 1.09606 1.74330 1.21007 0.78882 0.99248 0.96761 0.88922 1.22169 1.01721 1.01911 0.96173 1.22130 1.00322 0.97637 0.97726 1.20625 0.94820 0.91668 0.89906 1.42713 1.47908 1.39648 1.10002 1.19061 1.19422 1.13923 0.85080 0.89285 1.24698 0.99767 0.98958 0.95853 1.69708 1.44144 1.32625 1.11698 0.86516 0.82101 0.79718 0.79960 1.21071 1.21735 1.20382 1.20402 0.88125 1.00490 0.93709 1.23736 0.98817 0.96787 1.12214 1.84000 0.95285 1.10173 1.73740 0.88886 0.89579 0.88800 0.83962 0.84072 0.76247 0.92223 0.91412 0.92479 0.91339 0.90101 0.95466 0.95571 0.80702 0.93043 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.44 36.00 0.38 -0.02 16 2 C 0.09 0.83 7.29 -13.86 -0.10 0.72 16 3 N -0.47 -5.35 10.56 -8.96 -0.09 -5.45 16 4 C 0.11 1.24 7.00 -84.88 -0.59 0.65 16 5 C -0.07 -0.71 10.03 -39.33 -0.39 -1.10 16 6 C -0.07 -0.72 9.44 -39.74 -0.38 -1.10 16 7 C -0.12 -1.36 5.87 -105.00 -0.62 -1.97 16 8 C 0.56 7.43 7.73 -12.45 -0.10 7.34 16 9 O -0.54 -8.70 16.00 5.28 0.08 -8.61 16 10 N -0.71 -8.33 4.48 -54.83 -0.25 -8.58 16 11 C 0.15 1.79 2.57 -67.93 -0.17 1.62 16 12 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 13 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 14 C -0.14 -1.92 4.87 -26.73 -0.13 -2.05 16 15 C 0.16 2.93 6.15 -4.04 -0.02 2.91 16 16 N -0.76 -17.74 5.41 -59.91 -0.32 -18.07 16 17 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.45 13.97 55.49 0.78 -28.68 16 21 Si 0.89 21.93 27.74 -169.99 -4.71 17.22 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 25 C 0.00 -0.05 9.62 -38.98 -0.37 -0.42 16 26 C -0.20 -2.21 6.54 -38.61 -0.25 -2.46 16 27 S 0.11 0.96 23.11 -107.50 -2.48 -1.52 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 32 H 0.14 1.06 6.38 -52.49 -0.33 0.73 16 33 H 0.40 3.94 6.62 -40.82 -0.27 3.67 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.03 0.49 7.75 -51.93 -0.40 0.09 16 41 H 0.36 8.14 5.53 -40.82 -0.23 7.91 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.15 1.62 7.64 -52.49 -0.40 1.22 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -35.45 374.19 -9.87 -45.32 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.85 Total: 7.10 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.66 Total: -4.37 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.11 Total: -60.77 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.48 Total: -1.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.45 -9.87 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273103801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.809 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds