Wall clock time and date at job start Tue Mar 31 2020 16:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28054 * 124.24175 * 2 1 4 4 C 1.34412 * 117.91957 * 179.97438 * 3 2 1 5 5 C 1.41248 * 129.49011 * 180.02562 * 4 3 2 6 6 C 1.35750 * 120.63996 * 179.97438 * 5 4 3 7 7 C 1.40201 * 120.61184 * 0.02562 * 6 5 4 8 8 C 1.47588 * 120.12052 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99684 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00367 * 0.26696 * 8 7 6 11 11 C 1.46500 * 120.00431 * 179.72716 * 10 8 7 12 12 H 1.09002 * 109.46905 * 34.99910 * 11 10 8 13 13 C 1.53008 * 109.46837 * 275.00470 * 11 10 8 14 14 C 1.52995 * 109.47327 * 155.00306 * 11 10 8 15 15 C 1.53002 * 109.47042 * 294.99752 * 14 11 10 16 16 N 1.46496 * 109.47088 * 180.02562 * 15 14 11 17 17 C 1.36940 * 119.99986 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99922 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99614 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00044 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47367 * 89.99967 * 21 19 17 23 23 H 1.48500 * 109.47109 * 210.00251 * 21 19 17 24 24 H 1.48507 * 109.47242 * 329.99987 * 21 19 17 25 25 C 1.39173 * 119.74888 * 0.24920 * 7 6 5 26 26 C 1.38914 * 119.84689 * 359.45297 * 25 7 6 27 27 S 1.70649 * 124.24131 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47737 * 90.02236 * 1 2 3 29 29 H 1.09002 * 109.47349 * 210.02735 * 1 2 3 30 30 H 1.09001 * 109.47172 * 330.02217 * 1 2 3 31 31 H 1.08003 * 119.67584 * 359.93645 * 5 4 3 32 32 H 1.07993 * 119.69210 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00112 * 359.73154 * 10 8 7 34 34 H 1.08991 * 109.47246 * 60.00048 * 13 11 10 35 35 H 1.09004 * 109.46414 * 179.97438 * 13 11 10 36 36 H 1.08994 * 109.47203 * 299.99450 * 13 11 10 37 37 H 1.08994 * 109.47294 * 55.00438 * 14 11 10 38 38 H 1.09007 * 109.46880 * 175.00499 * 14 11 10 39 39 H 1.09003 * 109.47380 * 300.00505 * 15 14 11 40 40 H 1.09002 * 109.46668 * 60.00131 * 15 14 11 41 41 H 0.97004 * 119.99872 * 0.02562 * 16 15 14 42 42 H 0.97006 * 119.99713 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.07516 * 179.73126 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5634 0.9106 0.0005 5 6 4.5763 1.8951 0.0011 6 6 5.8864 1.5398 0.0021 7 6 6.2597 0.1884 0.0021 8 6 7.6874 -0.1857 0.0026 9 8 8.0085 -1.3584 0.0030 10 7 8.6351 0.7725 0.0086 11 6 10.0523 0.4013 0.0152 12 1 10.1933 -0.5044 -0.5748 13 6 10.5065 0.1483 1.4542 14 6 10.8800 1.5375 -0.5887 15 6 10.5129 1.7073 -2.0643 16 7 11.3060 2.7948 -2.6427 17 6 11.1475 3.1318 -3.9605 18 1 10.4376 2.5961 -4.5732 19 6 11.8993 4.1620 -4.5087 20 7 11.7466 4.4862 -5.7752 21 14 13.1277 5.0880 -3.4490 22 1 14.4503 4.4170 -3.5230 23 1 13.2525 6.4837 -3.9408 24 1 12.6567 5.0998 -2.0407 25 6 5.2788 -0.7989 -0.0043 26 6 3.9368 -0.4403 0.0009 27 16 2.4671 -1.4107 0.0006 28 1 -0.3635 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3056 2.9407 0.0002 32 1 6.6483 2.3052 0.0022 33 1 8.3789 1.7081 0.0086 34 1 9.9169 -0.6611 1.8844 35 1 11.5608 -0.1283 1.4590 36 1 10.3655 1.0539 2.0442 37 1 10.6710 2.4635 -0.0534 38 1 11.9403 1.2997 -0.5032 39 1 10.7220 0.7811 -2.5997 40 1 9.4526 1.9450 -2.1499 41 1 11.9433 3.2762 -2.0922 42 1 12.2717 5.2063 -6.1582 43 1 5.5604 -1.8415 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273103801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:07 Heat of formation + Delta-G solvation = 2.267841 kcal Electronic energy + Delta-G solvation = -24881.236148 eV Core-core repulsion = 21244.945105 eV Total energy + Delta-G solvation = -3636.291044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -41.80206 -40.77044 -38.26676 -37.67030 -36.23080 -33.87842 -33.08399 -32.35626 -31.97744 -29.82583 -29.28639 -25.79949 -25.40575 -24.55045 -23.13423 -22.52699 -22.10033 -21.38587 -19.94331 -19.61061 -18.65267 -17.60359 -16.99231 -16.61573 -16.53526 -16.35171 -16.04982 -15.73594 -15.56825 -15.15300 -15.06726 -14.80755 -14.45723 -14.33092 -14.18981 -14.10533 -13.84116 -13.60747 -13.32621 -13.12500 -12.97009 -12.92500 -12.48586 -12.40802 -12.17589 -12.03259 -11.98972 -11.83237 -11.73635 -11.33386 -11.14642 -10.97645 -10.78506 -10.20704 -9.75533 -9.31075 -9.27218 -8.03054 -5.37800 -1.01473 -0.02274 0.08064 0.55391 0.82175 1.38905 1.44198 1.51539 1.84945 2.07278 2.49376 2.62558 2.77567 3.28231 3.41251 3.44064 3.58303 3.83311 3.96328 4.01834 4.02565 4.10210 4.24954 4.27936 4.54917 4.56532 4.61427 4.63710 4.67096 4.76911 4.83049 4.87198 4.95267 5.02327 5.05259 5.12439 5.18984 5.26107 5.33872 5.41551 5.53037 5.74495 6.20499 6.45300 6.46163 7.07771 7.11115 7.82477 8.03839 9.18592 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002378 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.565772 B =11771.299941 C =12981.112629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.099 3.901 3 N -0.503 5.503 4 C 0.093 3.907 5 C -0.077 4.077 6 C -0.066 4.066 7 C -0.132 4.132 8 C 0.562 3.438 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.149 3.851 12 H 0.071 0.929 13 C -0.153 4.153 14 C -0.124 4.124 15 C 0.153 3.847 16 N -0.757 5.757 17 C -0.239 4.239 18 H 0.049 0.951 19 C -0.068 4.068 20 N -0.986 5.986 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.243 1.243 25 C -0.011 4.011 26 C -0.222 4.222 27 S 0.141 5.859 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.010 0.990 40 H 0.026 0.974 41 H 0.369 0.631 42 H 0.258 0.742 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.542 -9.779 20.837 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 N -0.218 5.218 4 C -0.028 4.028 5 C -0.098 4.098 6 C -0.088 4.088 7 C -0.138 4.138 8 C 0.350 3.650 9 O -0.455 6.455 10 N -0.356 5.356 11 C 0.044 3.956 12 H 0.089 0.911 13 C -0.211 4.211 14 C -0.162 4.162 15 C 0.027 3.973 16 N -0.403 5.403 17 C -0.370 4.370 18 H 0.067 0.933 19 C -0.259 4.259 20 N -0.636 5.636 21 Si 0.789 3.211 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.167 1.167 25 C -0.034 4.034 26 C -0.340 4.340 27 S 0.398 5.602 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.250 0.750 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.028 0.972 40 H 0.044 0.956 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.967 -11.190 20.642 31.479 hybrid contribution 1.328 1.646 -0.356 2.145 sum -19.639 -9.544 20.285 29.804 Atomic orbital electron populations 1.20846 0.81700 1.06154 1.05867 1.27654 1.03635 0.90461 0.96673 1.66245 1.04036 1.32423 1.19112 1.19689 0.89867 0.92194 1.01082 1.20552 0.90042 0.99562 0.99625 1.21063 0.96754 0.94860 0.96089 1.19837 0.92406 0.94609 1.06983 1.18198 0.85752 0.85290 0.75727 1.90760 1.83388 1.19480 1.51917 1.45970 1.06086 1.10003 1.73574 1.20923 0.78990 0.97832 0.97808 0.91080 1.22089 1.02200 1.02347 0.94480 1.21992 1.01143 0.99067 0.93961 1.20779 0.94215 0.89348 0.92963 1.42666 1.48645 1.40711 1.08261 1.19007 1.17965 1.13095 0.86968 0.93308 1.25633 1.02506 1.00436 0.97354 1.69911 1.45869 1.33657 1.14185 0.85301 0.78947 0.77279 0.79577 1.20486 1.22347 1.16657 1.20436 0.88623 1.00398 0.93916 1.23944 0.99507 0.97616 1.12965 1.83853 0.93739 1.09509 1.73114 0.87393 0.87168 0.88257 0.82344 0.81757 0.74969 0.93331 0.90140 0.90752 0.89221 0.88968 0.97180 0.95579 0.79713 0.93296 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.44 71.23 0.74 0.14 16 2 C 0.10 1.60 7.29 88.66 0.65 2.24 16 3 N -0.50 -11.05 10.56 -182.20 -1.92 -12.97 16 4 C 0.09 2.16 7.00 39.95 0.28 2.44 16 5 C -0.08 -1.53 10.03 22.43 0.23 -1.31 16 6 C -0.07 -1.25 9.44 22.17 0.21 -1.04 16 7 C -0.13 -3.07 5.87 -20.11 -0.12 -3.19 16 8 C 0.56 14.90 7.73 86.71 0.67 15.57 16 9 O -0.57 -19.11 16.00 -4.01 -0.06 -19.18 16 10 N -0.70 -15.66 4.48 -445.64 -2.00 -17.66 16 11 C 0.15 3.45 2.57 44.99 0.12 3.56 16 12 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 13 C -0.15 -2.84 9.48 71.98 0.68 -2.16 16 14 C -0.12 -3.05 4.87 30.59 0.15 -2.90 16 15 C 0.15 5.57 6.15 86.38 0.53 6.10 16 16 N -0.76 -34.39 5.41 -343.45 -1.86 -36.24 16 17 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 18 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.99 -63.62 13.97 21.65 0.30 -63.32 16 21 Si 0.96 44.46 27.74 68.60 1.90 46.36 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.24 -9.71 6.52 99.48 0.65 -9.06 16 25 C -0.01 -0.25 9.62 22.66 0.22 -0.04 16 26 C -0.22 -4.99 6.54 22.90 0.15 -4.84 16 27 S 0.14 2.31 23.11 -56.49 -1.31 1.00 16 28 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.17 2.16 6.38 -2.91 -0.02 2.14 16 33 H 0.41 7.24 6.62 -92.71 -0.61 6.63 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 40 H 0.03 0.96 7.75 -2.39 -0.02 0.94 16 41 H 0.37 15.47 5.53 -92.71 -0.51 14.95 16 42 H 0.26 15.81 8.31 -92.70 -0.77 15.03 16 43 H 0.14 3.33 7.64 -2.91 -0.02 3.31 16 Total: -1.00 -79.07 374.19 0.77 -78.30 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.13 Total: 25.55 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.85 Total: -1.84 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.47 Total: -130.19 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.06 Total: -19.18 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -79.07 0.77 -78.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273103801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.564 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds