Wall clock time and date at job start Tue Mar 31 2020 18:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46964 * 240.00237 * 2 1 3 5 5 N 1.46504 * 109.46977 * 185.00323 * 4 2 1 6 6 C 1.46504 * 119.99442 * 269.99919 * 5 4 2 7 7 C 1.36934 * 120.00530 * 89.99750 * 5 4 2 8 8 H 1.07998 * 119.99687 * 22.34143 * 7 5 4 9 9 C 1.38815 * 119.99943 * 202.33594 * 7 5 4 10 10 N 1.31617 * 120.00371 * 11.37084 * 9 7 5 11 11 Si 1.86805 * 119.99876 * 191.36708 * 9 7 5 12 12 H 1.48501 * 109.46922 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46984 * 119.99977 * 11 9 7 14 14 H 1.48500 * 109.47069 * 240.00516 * 11 9 7 15 15 N 1.46501 * 109.47541 * 120.00174 * 2 1 3 16 16 C 1.34777 * 120.00013 * 274.72926 * 15 2 1 17 17 O 1.21764 * 119.99765 * 0.26970 * 16 15 2 18 18 C 1.46111 * 120.00113 * 180.27154 * 16 15 2 19 19 S 1.75814 * 125.47860 * 0.02562 * 18 16 15 20 20 C 1.70574 * 91.67571 * 179.97438 * 19 18 16 21 21 C 1.33573 * 111.17187 * 359.97438 * 20 19 18 22 22 C 1.37349 * 125.47663 * 179.71249 * 18 16 15 23 23 N 1.39887 * 123.49147 * 0.02562 * 22 18 16 24 24 C 1.36607 * 125.66610 * 309.68966 * 23 22 18 25 25 C 1.34835 * 108.19309 * 179.88766 * 24 23 22 26 26 C 1.40974 * 107.47539 * 0.36972 * 25 24 23 27 27 C 1.34834 * 107.47224 * 359.76683 * 26 25 24 28 28 H 1.09009 * 109.47029 * 299.99675 * 1 2 3 29 29 H 1.08992 * 109.47331 * 59.99661 * 1 2 3 30 30 H 1.09006 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47349 * 304.99393 * 4 2 1 32 32 H 1.08991 * 109.47180 * 65.00019 * 4 2 1 33 33 H 1.08996 * 109.47358 * 94.23232 * 6 5 4 34 34 H 1.09009 * 109.46931 * 214.23202 * 6 5 4 35 35 H 1.08998 * 109.47471 * 334.22677 * 6 5 4 36 36 H 0.96990 * 120.00245 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00017 * 94.99536 * 15 2 1 38 38 H 1.08002 * 124.40836 * 179.97438 * 20 19 18 39 39 H 1.07999 * 122.45493 * 179.97438 * 21 20 19 40 40 H 1.07992 * 125.90420 * 0.03392 * 24 23 22 41 41 H 1.08000 * 126.26162 * 180.15659 * 25 24 23 42 42 H 1.08007 * 126.26134 * 179.74949 * 26 25 24 43 43 H 1.07998 * 125.89926 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3342 0.2341 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5338 -2.8399 -0.5088 9 6 5.3863 -1.8325 -0.1264 10 7 5.9794 -0.6613 -0.0337 11 14 6.2957 -3.3829 0.3825 12 1 5.4148 -4.5616 0.1828 13 1 7.5189 -3.5337 -0.4458 14 1 6.6764 -3.2859 1.8146 15 7 2.0184 -0.6906 1.1961 16 6 2.1523 -0.0170 2.3558 17 8 1.8627 1.1644 2.4105 18 6 2.6451 -0.7043 3.5472 19 16 3.1043 -2.3994 3.6308 20 6 3.5068 -2.2606 5.2826 21 6 3.3042 -1.0169 5.7256 22 6 2.8298 -0.1286 4.7805 23 7 2.5617 1.2172 5.0521 24 6 3.0062 2.2814 4.3199 25 6 2.5399 3.4099 4.8917 26 6 1.7871 3.0320 6.0221 27 6 1.8168 1.6860 6.0967 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1369 33 1 4.6022 0.9455 -0.9802 34 1 5.2403 -0.2028 -2.1813 35 1 3.7810 0.7485 -2.5470 36 1 6.8886 -0.6030 0.2991 37 1 2.2490 -1.6318 1.1525 38 1 3.8771 -3.0726 5.8908 39 1 3.5001 -0.7265 6.7473 40 1 3.6225 2.2279 3.4347 41 1 2.7143 4.4190 4.5486 42 1 1.2798 3.6986 6.7038 43 1 1.3353 1.0829 6.8522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275614888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:44 Heat of formation + Delta-G solvation = 85.147619 kcal Electronic energy + Delta-G solvation = -27270.636039 eV Core-core repulsion = 23637.938932 eV Total energy + Delta-G solvation = -3632.697107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.19279 -39.12572 -37.47801 -36.22916 -34.02040 -31.70547 -31.52043 -30.38515 -28.79728 -28.20358 -26.21635 -25.66203 -24.67269 -22.29809 -21.27641 -20.93473 -19.99849 -19.86831 -18.74321 -18.38306 -16.90045 -16.75029 -15.63699 -15.28877 -14.94014 -14.66457 -14.51789 -14.06414 -13.75816 -13.68275 -13.31858 -13.22045 -13.02202 -12.90111 -12.50564 -12.31930 -12.16770 -11.97733 -11.87185 -11.68319 -11.44435 -11.31592 -10.99183 -10.90986 -10.75871 -10.45001 -10.29839 -10.08587 -9.90020 -9.46455 -9.18388 -8.76498 -8.64172 -8.33794 -7.91644 -7.70044 -6.84429 -5.80786 -3.27053 0.49740 1.45525 1.85849 2.11806 2.88927 3.26025 3.32510 3.33994 3.36672 3.45677 3.58936 3.79205 4.39023 4.88522 5.10227 5.24205 5.28681 5.36085 5.45747 5.58833 5.64668 5.71644 5.81477 5.84009 5.92673 5.94644 6.06680 6.12095 6.12704 6.20005 6.40562 6.49296 6.60454 6.66729 6.71196 6.83732 7.16366 7.33800 7.34248 7.57200 7.64410 7.74946 7.81421 8.13881 8.29701 8.77577 9.13736 9.77667 10.27976 11.23170 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.005409 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.271693 B = 5175.544328 C = 6273.206306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.259 4.259 8 H 0.066 0.934 9 C 0.011 3.989 10 N -0.896 5.896 11 Si 0.885 3.115 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.287 1.287 15 N -0.680 5.680 16 C 0.585 3.415 17 O -0.532 6.532 18 C -0.255 4.255 19 S 0.268 5.732 20 C -0.237 4.237 21 C -0.149 4.149 22 C 0.164 3.836 23 N -0.383 5.383 24 C 0.063 3.937 25 C -0.219 4.219 26 C -0.190 4.190 27 C -0.027 4.027 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.044 0.956 35 H -0.004 1.004 36 H 0.252 0.748 37 H 0.400 0.600 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -1.936 8.844 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.388 4.388 8 H 0.084 0.916 9 C -0.188 4.188 10 N -0.540 5.540 11 Si 0.715 3.285 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.214 1.214 15 N -0.329 5.329 16 C 0.370 3.630 17 O -0.411 6.411 18 C -0.378 4.378 19 S 0.537 5.463 20 C -0.376 4.376 21 C -0.181 4.181 22 C 0.057 3.943 23 N -0.057 5.057 24 C -0.065 4.065 25 C -0.243 4.243 26 C -0.215 4.215 27 C -0.154 4.154 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.063 0.937 37 H 0.236 0.764 38 H 0.191 0.809 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.787 -2.604 7.755 11.294 hybrid contribution 0.919 -0.119 1.500 1.764 sum -6.868 -2.722 9.255 11.842 Atomic orbital electron populations 1.22157 0.96694 1.01299 1.01723 1.21882 0.91907 0.98459 0.86507 0.90229 1.21206 0.86023 0.97923 0.93574 1.43899 0.98859 1.22668 1.66638 1.20797 0.92965 0.90425 0.93857 1.19101 0.97213 0.89431 1.33103 0.91611 1.24961 0.98560 0.96005 0.99295 1.70066 1.13325 1.21490 1.49126 0.86472 0.80447 0.83278 0.78305 1.19993 1.21488 1.21367 1.45613 1.64820 1.13953 1.08500 1.16621 0.78203 0.86289 0.81908 1.90842 1.51475 1.14394 1.84408 1.24813 1.14480 0.99423 0.99112 1.83410 1.56570 1.03496 1.02869 1.25072 1.08918 1.01819 1.01756 1.19647 1.04745 0.92507 1.01231 1.16909 1.00749 0.84382 0.92232 1.40855 1.39897 1.02096 1.22876 1.21855 1.02545 0.84664 0.97474 1.20776 1.06339 0.97526 0.99617 1.20802 1.05997 0.93685 1.01029 1.21703 1.03651 0.94957 0.95050 0.92865 0.92073 0.93021 0.93330 0.92742 0.95389 0.93676 0.98536 0.93742 0.76397 0.80868 0.83518 0.82361 0.84899 0.84963 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.49 37.15 0.35 -2.07 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 3 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 4 C 0.14 2.65 5.36 -4.04 -0.02 2.63 16 5 N -0.60 -13.84 2.82 -181.11 -0.51 -14.35 16 6 C 0.16 3.91 9.01 59.85 0.54 4.45 16 7 C -0.26 -6.35 8.02 -15.06 -0.12 -6.47 16 8 H 0.07 1.56 7.84 -52.49 -0.41 1.15 16 9 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 10 N -0.90 -24.71 10.59 55.49 0.59 -24.13 16 11 Si 0.89 20.16 29.57 -169.99 -5.03 15.13 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 N -0.68 -13.12 4.48 -55.29 -0.25 -13.37 16 16 C 0.58 11.90 7.69 -13.10 -0.10 11.80 16 17 O -0.53 -11.91 12.69 5.13 0.07 -11.85 16 18 C -0.26 -4.62 6.43 -36.75 -0.24 -4.86 16 19 S 0.27 3.99 22.13 -107.50 -2.38 1.61 16 20 C -0.24 -2.96 10.90 29.10 0.32 -2.64 16 21 C -0.15 -2.05 9.96 -41.26 -0.41 -2.47 16 22 C 0.16 2.81 5.99 -84.55 -0.51 2.30 16 23 N -0.38 -6.77 2.65 -61.59 -0.16 -6.93 16 24 C 0.06 1.19 8.53 -16.63 -0.14 1.05 16 25 C -0.22 -3.72 10.86 -39.75 -0.43 -4.15 16 26 C -0.19 -2.91 10.86 -39.75 -0.43 -3.34 16 27 C -0.03 -0.42 11.24 -16.64 -0.19 -0.61 16 28 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 33 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 34 H 0.04 1.15 7.19 -51.92 -0.37 0.78 16 35 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 36 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.40 7.59 6.50 -40.82 -0.27 7.32 16 38 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.16 3.27 7.43 -52.49 -0.39 2.88 16 41 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -30.19 369.31 -9.74 -39.93 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.97 Total: 10.54 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.67 Total: -2.15 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.33 Total: -58.78 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.38 Total: 1.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.19 -9.74 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275614888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.081 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds