Wall clock time and date at job start Tue Mar 31 2020 18:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46964 * 240.00237 * 2 1 3 5 5 N 1.46504 * 109.46977 * 185.00323 * 4 2 1 6 6 C 1.46504 * 119.99442 * 269.99919 * 5 4 2 7 7 C 1.36934 * 120.00530 * 89.99750 * 5 4 2 8 8 H 1.07998 * 119.99687 * 22.34143 * 7 5 4 9 9 C 1.38815 * 119.99943 * 202.33594 * 7 5 4 10 10 N 1.31617 * 120.00371 * 11.37084 * 9 7 5 11 11 Si 1.86805 * 119.99876 * 191.36708 * 9 7 5 12 12 H 1.48501 * 109.46922 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46984 * 119.99977 * 11 9 7 14 14 H 1.48500 * 109.47069 * 240.00516 * 11 9 7 15 15 N 1.46501 * 109.47541 * 120.00174 * 2 1 3 16 16 C 1.34777 * 120.00013 * 274.72926 * 15 2 1 17 17 O 1.21764 * 119.99765 * 0.26970 * 16 15 2 18 18 C 1.46111 * 120.00113 * 180.27154 * 16 15 2 19 19 S 1.75814 * 125.47860 * 0.02562 * 18 16 15 20 20 C 1.70574 * 91.67571 * 179.97438 * 19 18 16 21 21 C 1.33573 * 111.17187 * 359.97438 * 20 19 18 22 22 C 1.37349 * 125.47663 * 179.71249 * 18 16 15 23 23 N 1.39887 * 123.49147 * 0.02562 * 22 18 16 24 24 C 1.36607 * 125.66610 * 309.68966 * 23 22 18 25 25 C 1.34835 * 108.19309 * 179.88766 * 24 23 22 26 26 C 1.40974 * 107.47539 * 0.36972 * 25 24 23 27 27 C 1.34834 * 107.47224 * 359.76683 * 26 25 24 28 28 H 1.09009 * 109.47029 * 299.99675 * 1 2 3 29 29 H 1.08992 * 109.47331 * 59.99661 * 1 2 3 30 30 H 1.09006 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47349 * 304.99393 * 4 2 1 32 32 H 1.08991 * 109.47180 * 65.00019 * 4 2 1 33 33 H 1.08996 * 109.47358 * 94.23232 * 6 5 4 34 34 H 1.09009 * 109.46931 * 214.23202 * 6 5 4 35 35 H 1.08998 * 109.47471 * 334.22677 * 6 5 4 36 36 H 0.96990 * 120.00245 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00017 * 94.99536 * 15 2 1 38 38 H 1.08002 * 124.40836 * 179.97438 * 20 19 18 39 39 H 1.07999 * 122.45493 * 179.97438 * 21 20 19 40 40 H 1.07992 * 125.90420 * 0.03392 * 24 23 22 41 41 H 1.08000 * 126.26162 * 180.15659 * 25 24 23 42 42 H 1.08007 * 126.26134 * 179.74949 * 26 25 24 43 43 H 1.07998 * 125.89926 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3342 0.2341 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5338 -2.8399 -0.5088 9 6 5.3863 -1.8325 -0.1264 10 7 5.9794 -0.6613 -0.0337 11 14 6.2957 -3.3829 0.3825 12 1 5.4148 -4.5616 0.1828 13 1 7.5189 -3.5337 -0.4458 14 1 6.6764 -3.2859 1.8146 15 7 2.0184 -0.6906 1.1961 16 6 2.1523 -0.0170 2.3558 17 8 1.8627 1.1644 2.4105 18 6 2.6451 -0.7043 3.5472 19 16 3.1043 -2.3994 3.6308 20 6 3.5068 -2.2606 5.2826 21 6 3.3042 -1.0169 5.7256 22 6 2.8298 -0.1286 4.7805 23 7 2.5617 1.2172 5.0521 24 6 3.0062 2.2814 4.3199 25 6 2.5399 3.4099 4.8917 26 6 1.7871 3.0320 6.0221 27 6 1.8168 1.6860 6.0967 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1369 33 1 4.6022 0.9455 -0.9802 34 1 5.2403 -0.2028 -2.1813 35 1 3.7810 0.7485 -2.5470 36 1 6.8886 -0.6030 0.2991 37 1 2.2490 -1.6318 1.1525 38 1 3.8771 -3.0726 5.8908 39 1 3.5001 -0.7265 6.7473 40 1 3.6225 2.2279 3.4347 41 1 2.7143 4.4190 4.5486 42 1 1.2798 3.6986 6.7038 43 1 1.3353 1.0829 6.8522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275614888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:43 Heat of formation + Delta-G solvation = 68.754157 kcal Electronic energy + Delta-G solvation = -27271.346912 eV Core-core repulsion = 23637.938932 eV Total energy + Delta-G solvation = -3633.407981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46769 -40.62031 -38.71770 -37.87989 -35.72597 -33.30266 -32.86485 -32.00323 -30.10141 -29.46787 -28.05102 -27.38870 -25.89995 -23.83162 -22.82172 -22.23270 -21.41835 -21.26754 -20.01523 -19.78012 -18.62540 -18.17647 -17.06611 -16.88489 -16.55822 -16.05146 -15.72364 -15.57971 -15.31065 -15.05125 -14.93695 -14.66656 -14.49916 -14.21685 -13.90823 -13.77977 -13.43188 -13.32352 -13.16949 -13.10867 -12.95675 -12.86286 -12.73333 -12.53221 -12.19366 -12.08517 -11.97647 -11.91781 -11.69216 -11.00461 -10.60882 -10.40039 -10.07203 -9.74620 -9.15422 -9.00861 -8.77124 -7.77133 -5.24868 -0.73265 0.26332 0.73718 0.97656 1.44442 1.49500 1.57055 1.61871 2.05643 2.13251 2.17067 2.36666 2.53012 3.39070 3.67533 3.80263 3.94768 3.99304 4.14346 4.28997 4.34035 4.40226 4.49796 4.53665 4.65440 4.73464 4.75348 4.81592 4.88054 4.90603 4.97322 4.99793 5.15118 5.32600 5.33557 5.36415 5.40027 5.65154 5.68027 5.73506 6.07426 6.26989 6.34538 6.54993 6.62605 7.17198 7.27207 7.89481 8.36255 9.26583 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.005409 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.271693 B = 5175.544328 C = 6273.206306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.042 0.958 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.248 4.248 8 H 0.080 0.920 9 C -0.040 4.040 10 N -0.934 5.934 11 Si 0.936 3.064 12 H -0.251 1.251 13 H -0.302 1.302 14 H -0.288 1.288 15 N -0.681 5.681 16 C 0.576 3.424 17 O -0.566 6.566 18 C -0.303 4.303 19 S 0.273 5.727 20 C -0.205 4.205 21 C -0.158 4.158 22 C 0.158 3.842 23 N -0.391 5.391 24 C 0.026 3.974 25 C -0.220 4.220 26 C -0.195 4.195 27 C -0.022 4.022 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H -0.010 1.010 34 H 0.020 0.980 35 H 0.026 0.974 36 H 0.241 0.759 37 H 0.402 0.598 38 H 0.218 0.782 39 H 0.175 0.825 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 -4.224 10.562 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.060 0.940 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.035 3.965 7 C -0.378 4.378 8 H 0.098 0.902 9 C -0.236 4.236 10 N -0.581 5.581 11 Si 0.765 3.235 12 H -0.175 1.175 13 H -0.230 1.230 14 H -0.215 1.215 15 N -0.330 5.330 16 C 0.363 3.637 17 O -0.448 6.448 18 C -0.426 4.426 19 S 0.541 5.459 20 C -0.344 4.344 21 C -0.189 4.189 22 C 0.049 3.951 23 N -0.065 5.065 24 C -0.103 4.103 25 C -0.244 4.244 26 C -0.220 4.220 27 C -0.148 4.148 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.008 0.992 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.238 0.762 38 H 0.235 0.765 39 H 0.193 0.807 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.182 0.818 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.437 -4.929 9.457 14.240 hybrid contribution 1.368 0.606 0.965 1.781 sum -8.068 -4.323 10.422 13.871 Atomic orbital electron populations 1.22020 0.93689 1.02690 1.02020 1.21780 0.94146 0.96242 0.86282 0.94006 1.21401 0.83406 0.99428 0.94340 1.44130 1.00745 1.22079 1.66436 1.20478 0.92777 0.89942 0.93305 1.19448 0.97029 0.90169 1.31124 0.90208 1.25598 0.99646 0.98040 1.00284 1.70269 1.12962 1.23557 1.51303 0.85644 0.79072 0.81356 0.77445 1.17474 1.23019 1.21485 1.45644 1.64837 1.13896 1.08575 1.17032 0.77753 0.86110 0.82837 1.90809 1.53001 1.15799 1.85175 1.24751 1.17505 1.01545 0.98782 1.83277 1.56466 1.01134 1.04999 1.25586 1.05969 1.02419 1.00385 1.19868 1.04864 0.92250 1.01898 1.17447 1.00263 0.84546 0.92811 1.41015 1.40182 1.02155 1.23157 1.21555 1.04500 0.86354 0.97842 1.21075 1.05833 0.97469 1.00066 1.21178 1.05749 0.94299 1.00752 1.22370 1.02292 0.95573 0.94590 0.94563 0.89759 0.90971 0.91256 0.90578 0.99172 0.96144 0.95517 0.94940 0.76244 0.76498 0.80750 0.85874 0.83941 0.81835 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.49 71.98 0.68 -3.55 16 2 C 0.12 4.57 2.88 44.99 0.13 4.70 16 3 H 0.04 1.87 7.57 -2.39 -0.02 1.85 16 4 C 0.14 5.11 5.36 86.38 0.46 5.57 16 5 N -0.61 -28.30 2.82 -726.92 -2.05 -30.35 16 6 C 0.18 8.85 9.01 127.77 1.15 10.00 16 7 C -0.25 -12.05 8.02 84.03 0.67 -11.38 16 8 H 0.08 3.63 7.84 -2.91 -0.02 3.60 16 9 C -0.04 -2.09 5.13 84.86 0.44 -1.65 16 10 N -0.93 -53.72 10.59 21.65 0.23 -53.49 16 11 Si 0.94 41.26 29.57 68.60 2.03 43.29 16 12 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 15 N -0.68 -26.82 4.48 -447.03 -2.00 -28.82 16 16 C 0.58 24.51 7.69 86.29 0.66 25.17 16 17 O -0.57 -27.08 12.69 -4.55 -0.06 -27.14 16 18 C -0.30 -11.16 6.43 24.10 0.15 -11.00 16 19 S 0.27 7.70 22.13 -56.49 -1.25 6.45 16 20 C -0.21 -4.41 10.90 66.76 0.73 -3.68 16 21 C -0.16 -3.94 9.96 21.18 0.21 -3.73 16 22 C 0.16 5.34 5.99 37.62 0.23 5.56 16 23 N -0.39 -13.91 2.65 -348.78 -0.93 -14.83 16 24 C 0.03 1.04 8.53 83.17 0.71 1.75 16 25 C -0.22 -7.66 10.86 22.16 0.24 -7.42 16 26 C -0.20 -5.70 10.86 22.16 0.24 -5.46 16 27 C -0.02 -0.65 11.24 83.17 0.93 0.28 16 28 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 2.26 8.03 -2.38 -0.02 2.24 16 32 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 33 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 34 H 0.02 1.06 7.19 -2.38 -0.02 1.05 16 35 H 0.03 1.11 7.84 -2.39 -0.02 1.10 16 36 H 0.24 13.83 8.31 -92.72 -0.77 13.06 16 37 H 0.40 15.21 6.50 -92.71 -0.60 14.61 16 38 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.12 5.70 7.43 -2.91 -0.02 5.68 16 41 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -70.19 369.31 4.03 -66.16 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.42 Total: 33.59 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 7.64 Total: 5.15 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -4.75 Total: -127.50 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.06 Total: -27.14 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 7.70 SS G_CDS: -1.25 Total: 6.45 kcal Total: -70.19 4.03 -66.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275614888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.912 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds