Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 C 1.52998 * 109.46862 * 120.00174 * 2 1 3 5 5 N 1.46499 * 109.46870 * 174.99816 * 4 2 1 6 6 C 1.46504 * 120.00085 * 269.99575 * 5 4 2 7 7 C 1.36945 * 120.00090 * 89.99956 * 5 4 2 8 8 H 1.07996 * 119.99762 * 20.37889 * 7 5 4 9 9 C 1.38813 * 119.99978 * 200.38139 * 7 5 4 10 10 N 1.31612 * 120.00045 * 15.00198 * 9 7 5 11 11 Si 1.86800 * 119.99719 * 195.00650 * 9 7 5 12 12 H 1.48497 * 109.47492 * 85.00329 * 11 9 7 13 13 H 1.48500 * 109.47016 * 205.00093 * 11 9 7 14 14 H 1.48497 * 109.47355 * 325.00093 * 11 9 7 15 15 N 1.46496 * 109.46831 * 239.99886 * 2 1 3 16 16 C 1.34776 * 120.00240 * 85.00507 * 15 2 1 17 17 O 1.21764 * 119.99788 * 359.97438 * 16 15 2 18 18 C 1.46111 * 120.00414 * 179.97438 * 16 15 2 19 19 S 1.75814 * 125.47480 * 0.02562 * 18 16 15 20 20 C 1.70573 * 91.67377 * 180.02562 * 19 18 16 21 21 C 1.33576 * 111.17400 * 0.02562 * 20 19 18 22 22 C 1.37350 * 125.47894 * 179.71948 * 18 16 15 23 23 N 1.39884 * 123.48623 * 359.97438 * 22 18 16 24 24 C 1.36600 * 125.67200 * 309.69533 * 23 22 18 25 25 C 1.34839 * 108.19503 * 179.83308 * 24 23 22 26 26 C 1.40971 * 107.47394 * 0.42457 * 25 24 23 27 27 C 1.34834 * 107.47550 * 359.73566 * 26 25 24 28 28 H 1.09002 * 109.46861 * 300.00218 * 1 2 3 29 29 H 1.08997 * 109.46835 * 59.99478 * 1 2 3 30 30 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47500 * 294.99136 * 4 2 1 32 32 H 1.08998 * 109.47396 * 54.99740 * 4 2 1 33 33 H 1.08998 * 109.46557 * 95.13587 * 6 5 4 34 34 H 1.08999 * 109.46992 * 215.13177 * 6 5 4 35 35 H 1.08993 * 109.47002 * 335.13314 * 6 5 4 36 36 H 0.97002 * 119.99931 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00390 * 265.00103 * 15 2 1 38 38 H 1.07997 * 124.41263 * 179.97438 * 20 19 18 39 39 H 1.08006 * 122.45997 * 180.02562 * 21 20 19 40 40 H 1.07996 * 125.90252 * 359.96815 * 24 23 22 41 41 H 1.08003 * 126.26630 * 180.19722 * 25 24 23 42 42 H 1.08006 * 126.26280 * 179.70460 * 26 25 24 43 43 H 1.08001 * 125.90308 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9921 0.5612 7 6 4.2799 0.1648 1.7240 8 1 3.8671 0.8401 2.4588 9 6 5.6009 0.3015 1.3203 10 7 6.0234 -0.3085 0.2332 11 14 6.7791 1.3512 2.3200 12 1 7.3499 0.5395 3.4247 13 1 7.8760 1.8354 1.4438 14 1 6.0483 2.5133 2.8861 15 7 2.0182 -0.6906 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8571 1.1630 -2.4119 18 6 2.6345 -0.7070 -3.5500 19 16 3.0922 -2.4024 -3.6340 20 6 3.4881 -2.2653 -5.2874 21 6 3.2847 -1.0218 -5.7308 22 6 2.8033 -0.1353 -4.7875 23 7 2.5218 1.2070 -5.0624 24 6 1.3614 1.8574 -4.7520 25 6 1.4690 3.1342 -5.1719 26 6 2.7366 3.2770 -5.7719 27 6 3.3595 2.0839 -5.6914 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 4.3628 -1.7607 -0.4772 34 1 5.0415 -2.2454 1.0952 35 1 3.4384 -2.8372 0.5974 36 1 6.9464 -0.2126 -0.0491 37 1 2.2489 -1.6318 -1.1526 38 1 3.8562 -3.0778 -5.8963 39 1 3.4767 -0.7323 -6.7535 40 1 0.5064 1.4244 -4.2541 41 1 0.7196 3.9053 -5.0708 42 1 3.1357 4.1774 -6.2154 43 1 4.3494 1.8600 -6.0607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275614889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = 87.149555 kcal Electronic energy + Delta-G solvation = -27022.678599 eV Core-core repulsion = 23390.068302 eV Total energy + Delta-G solvation = -3632.610296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25602 -39.22762 -37.56914 -36.27120 -34.05798 -31.76927 -31.48298 -30.46609 -28.89555 -28.27484 -26.22830 -25.64282 -24.75609 -22.36259 -21.27092 -20.93326 -20.10223 -20.03977 -18.82250 -18.40952 -17.06989 -16.70475 -15.76613 -15.31157 -14.90971 -14.79956 -14.52106 -14.14415 -13.77141 -13.70830 -13.41853 -13.18860 -13.09829 -12.95386 -12.67695 -12.34078 -12.17628 -12.01365 -11.95415 -11.70522 -11.48089 -11.15389 -11.10793 -10.86680 -10.79521 -10.57619 -10.25543 -9.99694 -9.85629 -9.54614 -9.26203 -8.86989 -8.61463 -8.41482 -7.98918 -7.75040 -6.80931 -5.74432 -3.17379 0.38972 1.33136 1.73504 2.02429 2.83032 3.26400 3.39249 3.40953 3.44911 3.46391 3.47093 3.69957 4.50414 4.78491 5.01309 5.14036 5.31768 5.32989 5.44686 5.53531 5.59161 5.66062 5.74277 5.80276 5.84916 5.94769 5.98815 6.04427 6.05964 6.19184 6.42918 6.48463 6.55995 6.57357 6.59969 6.83188 7.07319 7.27228 7.28564 7.51121 7.60178 7.74966 7.79656 7.96880 8.35554 8.65622 9.20613 9.83758 10.30327 11.31105 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.004451 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.826980 B = 6289.142826 C = 6523.764186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.088 0.912 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.257 4.257 8 H 0.069 0.931 9 C 0.005 3.995 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.691 5.691 16 C 0.585 3.415 17 O -0.521 6.521 18 C -0.259 4.259 19 S 0.259 5.741 20 C -0.231 4.231 21 C -0.148 4.148 22 C 0.169 3.831 23 N -0.385 5.385 24 C 0.054 3.946 25 C -0.214 4.214 26 C -0.190 4.190 27 C -0.020 4.020 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.044 0.956 35 H -0.005 1.005 36 H 0.251 0.749 37 H 0.391 0.609 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 -5.930 -11.499 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.015 3.985 7 C -0.386 4.386 8 H 0.087 0.913 9 C -0.194 4.194 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.340 5.340 16 C 0.370 3.630 17 O -0.399 6.399 18 C -0.382 4.382 19 S 0.526 5.474 20 C -0.370 4.370 21 C -0.180 4.180 22 C 0.062 3.938 23 N -0.059 5.059 24 C -0.074 4.074 25 C -0.238 4.238 26 C -0.215 4.215 27 C -0.146 4.146 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.193 0.807 39 H 0.166 0.834 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.827 -6.622 -10.447 15.196 hybrid contribution 1.160 1.326 -0.670 1.885 sum -7.667 -5.296 -11.117 14.506 Atomic orbital electron populations 1.22151 0.96634 1.01135 1.01852 1.21941 0.91792 0.99268 0.85944 0.89351 1.21208 0.85805 0.97273 0.94342 1.43927 0.99045 1.20891 1.68071 1.20866 0.94626 0.85083 0.97897 1.19168 0.92889 1.09751 1.16789 0.91278 1.24933 0.98615 0.99372 0.96462 1.70056 1.15919 1.46740 1.22055 0.86291 0.80942 0.80049 0.79380 1.21512 1.21845 1.20567 1.45669 1.65894 1.13263 1.09154 1.16613 0.78142 0.86330 0.81875 1.90867 1.50590 1.14190 1.84288 1.24792 1.15649 1.00063 0.97686 1.83165 1.57053 1.03566 1.03569 1.25038 1.08647 1.01767 1.01523 1.19688 1.05300 0.92149 1.00913 1.16930 1.01134 0.84475 0.91227 1.40843 1.13914 1.05440 1.45659 1.21675 0.89951 0.93075 1.02701 1.20773 0.99072 0.95829 1.08144 1.20822 0.96289 0.96972 1.07416 1.21768 0.97158 0.90027 1.05634 0.91881 0.92908 0.93171 0.92043 0.93968 0.95094 0.93679 0.98686 0.93874 0.77476 0.80740 0.83387 0.82737 0.84881 0.84828 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.19 2.88 -67.93 -0.20 1.99 16 3 H 0.09 2.00 7.58 -51.93 -0.39 1.61 16 4 C 0.14 2.71 5.33 -4.04 -0.02 2.69 16 5 N -0.60 -14.21 2.78 -181.12 -0.50 -14.71 16 6 C 0.16 3.65 7.60 59.85 0.45 4.11 16 7 C -0.26 -6.93 9.68 -15.05 -0.15 -7.08 16 8 H 0.07 1.85 7.86 -52.49 -0.41 1.43 16 9 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 10 N -0.90 -25.96 10.67 55.49 0.59 -25.37 16 11 Si 0.90 22.22 29.58 -169.99 -5.03 17.19 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 N -0.69 -12.70 4.42 -55.29 -0.24 -12.94 16 16 C 0.59 11.51 7.68 -13.10 -0.10 11.41 16 17 O -0.52 -11.63 12.69 5.13 0.07 -11.56 16 18 C -0.26 -4.37 6.43 -36.75 -0.24 -4.60 16 19 S 0.26 3.25 22.13 -107.50 -2.38 0.87 16 20 C -0.23 -2.48 10.90 29.10 0.32 -2.16 16 21 C -0.15 -1.85 9.96 -41.26 -0.41 -2.27 16 22 C 0.17 2.72 5.99 -84.55 -0.51 2.22 16 23 N -0.38 -6.58 2.65 -61.59 -0.16 -6.74 16 24 C 0.05 0.93 8.52 -16.63 -0.14 0.79 16 25 C -0.21 -3.48 10.86 -39.75 -0.43 -3.92 16 26 C -0.19 -2.96 10.86 -39.75 -0.43 -3.39 16 27 C -0.02 -0.31 11.24 -16.63 -0.19 -0.50 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 32 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 33 H 0.03 0.75 6.97 -51.93 -0.36 0.39 16 34 H 0.04 1.14 7.22 -51.93 -0.37 0.76 16 35 H -0.01 -0.10 7.83 -51.93 -0.41 -0.51 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 37 H 0.39 6.64 6.28 -40.82 -0.26 6.38 16 38 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.16 2.60 7.44 -52.49 -0.39 2.21 16 41 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -32.94 368.82 -9.82 -42.75 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.94 Total: 7.61 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.77 Total: -2.66 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.32 Total: -59.77 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.38 Total: 0.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.94 -9.82 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275614889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.901 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds