Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 C 1.52998 * 109.46862 * 120.00174 * 2 1 3 5 5 N 1.46499 * 109.46870 * 174.99816 * 4 2 1 6 6 C 1.46504 * 120.00085 * 269.99575 * 5 4 2 7 7 C 1.36945 * 120.00090 * 89.99956 * 5 4 2 8 8 H 1.07996 * 119.99762 * 20.37889 * 7 5 4 9 9 C 1.38813 * 119.99978 * 200.38139 * 7 5 4 10 10 N 1.31612 * 120.00045 * 15.00198 * 9 7 5 11 11 Si 1.86800 * 119.99719 * 195.00650 * 9 7 5 12 12 H 1.48497 * 109.47492 * 85.00329 * 11 9 7 13 13 H 1.48500 * 109.47016 * 205.00093 * 11 9 7 14 14 H 1.48497 * 109.47355 * 325.00093 * 11 9 7 15 15 N 1.46496 * 109.46831 * 239.99886 * 2 1 3 16 16 C 1.34776 * 120.00240 * 85.00507 * 15 2 1 17 17 O 1.21764 * 119.99788 * 359.97438 * 16 15 2 18 18 C 1.46111 * 120.00414 * 179.97438 * 16 15 2 19 19 S 1.75814 * 125.47480 * 0.02562 * 18 16 15 20 20 C 1.70573 * 91.67377 * 180.02562 * 19 18 16 21 21 C 1.33576 * 111.17400 * 0.02562 * 20 19 18 22 22 C 1.37350 * 125.47894 * 179.71948 * 18 16 15 23 23 N 1.39884 * 123.48623 * 359.97438 * 22 18 16 24 24 C 1.36600 * 125.67200 * 309.69533 * 23 22 18 25 25 C 1.34839 * 108.19503 * 179.83308 * 24 23 22 26 26 C 1.40971 * 107.47394 * 0.42457 * 25 24 23 27 27 C 1.34834 * 107.47550 * 359.73566 * 26 25 24 28 28 H 1.09002 * 109.46861 * 300.00218 * 1 2 3 29 29 H 1.08997 * 109.46835 * 59.99478 * 1 2 3 30 30 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47500 * 294.99136 * 4 2 1 32 32 H 1.08998 * 109.47396 * 54.99740 * 4 2 1 33 33 H 1.08998 * 109.46557 * 95.13587 * 6 5 4 34 34 H 1.08999 * 109.46992 * 215.13177 * 6 5 4 35 35 H 1.08993 * 109.47002 * 335.13314 * 6 5 4 36 36 H 0.97002 * 119.99931 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00390 * 265.00103 * 15 2 1 38 38 H 1.07997 * 124.41263 * 179.97438 * 20 19 18 39 39 H 1.08006 * 122.45997 * 180.02562 * 21 20 19 40 40 H 1.07996 * 125.90252 * 359.96815 * 24 23 22 41 41 H 1.08003 * 126.26630 * 180.19722 * 25 24 23 42 42 H 1.08006 * 126.26280 * 179.70460 * 26 25 24 43 43 H 1.08001 * 125.90308 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9921 0.5612 7 6 4.2799 0.1648 1.7240 8 1 3.8671 0.8401 2.4588 9 6 5.6009 0.3015 1.3203 10 7 6.0234 -0.3085 0.2332 11 14 6.7791 1.3512 2.3200 12 1 7.3499 0.5395 3.4247 13 1 7.8760 1.8354 1.4438 14 1 6.0483 2.5133 2.8861 15 7 2.0182 -0.6906 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8571 1.1630 -2.4119 18 6 2.6345 -0.7070 -3.5500 19 16 3.0922 -2.4024 -3.6340 20 6 3.4881 -2.2653 -5.2874 21 6 3.2847 -1.0218 -5.7308 22 6 2.8033 -0.1353 -4.7875 23 7 2.5218 1.2070 -5.0624 24 6 1.3614 1.8574 -4.7520 25 6 1.4690 3.1342 -5.1719 26 6 2.7366 3.2770 -5.7719 27 6 3.3595 2.0839 -5.6914 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 4.3628 -1.7607 -0.4772 34 1 5.0415 -2.2454 1.0952 35 1 3.4384 -2.8372 0.5974 36 1 6.9464 -0.2126 -0.0491 37 1 2.2489 -1.6318 -1.1526 38 1 3.8562 -3.0778 -5.8963 39 1 3.4767 -0.7323 -6.7535 40 1 0.5064 1.4244 -4.2541 41 1 0.7196 3.9053 -5.0708 42 1 3.1357 4.1774 -6.2154 43 1 4.3494 1.8600 -6.0607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275614889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = 68.318308 kcal Electronic energy + Delta-G solvation = -27023.495183 eV Core-core repulsion = 23390.068302 eV Total energy + Delta-G solvation = -3633.426880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46449 -40.66941 -38.71985 -37.90345 -35.78237 -33.25652 -32.86583 -32.12434 -30.12208 -29.48316 -27.99629 -27.42872 -25.90005 -23.84938 -22.75515 -22.22785 -21.59683 -21.26722 -20.02955 -19.71133 -18.81323 -18.11944 -17.09528 -16.94906 -16.56660 -16.07295 -15.70595 -15.53560 -15.33704 -15.22593 -14.91158 -14.66119 -14.49473 -14.21886 -13.91814 -13.75268 -13.45659 -13.31774 -13.17854 -13.10846 -12.94862 -12.83082 -12.68507 -12.57695 -12.31931 -12.12563 -12.05605 -11.84930 -11.74852 -11.03631 -10.63820 -10.38923 -10.10242 -9.77058 -9.13698 -9.01141 -8.76673 -7.83501 -5.26147 -0.73040 0.27230 0.74861 0.97388 1.42450 1.43490 1.50357 1.60687 2.06168 2.09002 2.17546 2.33107 2.49989 3.30070 3.66829 3.76529 3.94790 4.00062 4.15958 4.28722 4.32993 4.37807 4.49516 4.53546 4.66590 4.74058 4.75885 4.80425 4.86614 4.92540 4.97683 5.00407 5.16861 5.33999 5.34773 5.36311 5.37715 5.62104 5.64257 5.76965 6.06351 6.28334 6.32002 6.52634 6.55590 7.16530 7.22703 7.89023 8.28317 9.18913 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.004451 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.826980 B = 6289.142826 C = 6523.764186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.124 3.876 3 H 0.037 0.963 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.172 3.828 7 C -0.259 4.259 8 H 0.067 0.933 9 C -0.049 4.049 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.281 1.281 13 H -0.301 1.301 14 H -0.277 1.277 15 N -0.688 5.688 16 C 0.577 3.423 17 O -0.563 6.563 18 C -0.312 4.312 19 S 0.293 5.707 20 C -0.200 4.200 21 C -0.162 4.162 22 C 0.159 3.841 23 N -0.394 5.394 24 C 0.033 3.967 25 C -0.225 4.225 26 C -0.199 4.199 27 C -0.032 4.032 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.037 0.963 36 H 0.243 0.757 37 H 0.398 0.602 38 H 0.220 0.780 39 H 0.171 0.829 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 -7.803 -12.184 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 H 0.056 0.944 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.027 3.973 7 C -0.389 4.389 8 H 0.084 0.916 9 C -0.245 4.245 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.208 1.208 13 H -0.228 1.228 14 H -0.202 1.202 15 N -0.337 5.337 16 C 0.364 3.636 17 O -0.444 6.444 18 C -0.434 4.434 19 S 0.561 5.439 20 C -0.338 4.338 21 C -0.193 4.193 22 C 0.051 3.949 23 N -0.067 5.067 24 C -0.095 4.095 25 C -0.249 4.249 26 C -0.224 4.224 27 C -0.158 4.158 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.234 0.766 38 H 0.237 0.763 39 H 0.188 0.812 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.175 0.825 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.153 -8.528 -11.105 16.728 hybrid contribution 1.204 1.845 -0.462 2.251 sum -7.949 -6.683 -11.567 15.545 Atomic orbital electron populations 1.22015 0.93346 1.02933 1.02052 1.21737 0.94247 0.96399 0.85961 0.94445 1.21398 0.83271 0.99383 0.94525 1.44132 1.00871 1.20481 1.67919 1.20664 0.94415 0.86080 0.96127 1.19441 0.93398 1.09813 1.16279 0.91560 1.25577 1.00139 1.01171 0.97607 1.70203 1.15480 1.48339 1.23296 0.85435 0.78929 0.78888 0.78108 1.20756 1.22836 1.20205 1.45638 1.65783 1.13481 1.08834 1.17077 0.77543 0.86132 0.82887 1.90826 1.52457 1.15960 1.85145 1.24710 1.18777 1.02876 0.97044 1.82967 1.55973 1.00086 1.04838 1.25594 1.05419 1.02163 1.00653 1.19863 1.05897 0.92121 1.01396 1.17477 1.00983 0.84514 0.91932 1.41043 1.13876 1.06242 1.45588 1.21729 0.90429 0.93812 1.03561 1.21105 0.99963 0.95864 1.07964 1.21181 0.95954 0.97874 1.07345 1.22263 0.97954 0.90159 1.05434 0.90244 0.94174 0.90451 0.91506 0.90369 0.96919 0.96791 0.94429 0.94741 0.76632 0.76307 0.81154 0.83580 0.83497 0.82504 0.80455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.48 71.98 0.68 -3.42 16 2 C 0.12 4.61 2.88 44.99 0.13 4.74 16 3 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 4 C 0.14 5.18 5.33 86.38 0.46 5.64 16 5 N -0.61 -28.85 2.78 -726.93 -2.02 -30.87 16 6 C 0.17 7.72 7.60 127.77 0.97 8.70 16 7 C -0.26 -14.10 9.68 84.03 0.81 -13.28 16 8 H 0.07 3.57 7.86 -2.91 -0.02 3.55 16 9 C -0.05 -2.79 5.06 84.86 0.43 -2.36 16 10 N -0.93 -54.34 10.67 21.65 0.23 -54.11 16 11 Si 0.96 46.38 29.58 68.60 2.03 48.40 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 N -0.69 -25.44 4.42 -447.03 -1.97 -27.42 16 16 C 0.58 23.44 7.68 86.29 0.66 24.10 16 17 O -0.56 -26.55 12.69 -4.55 -0.06 -26.61 16 18 C -0.31 -10.57 6.43 24.10 0.15 -10.41 16 19 S 0.29 6.80 22.13 -56.49 -1.25 5.55 16 20 C -0.20 -3.58 10.90 66.76 0.73 -2.85 16 21 C -0.16 -3.69 9.96 21.18 0.21 -3.48 16 22 C 0.16 5.09 5.99 37.62 0.23 5.32 16 23 N -0.39 -13.70 2.65 -348.78 -0.92 -14.62 16 24 C 0.03 1.19 8.52 83.17 0.71 1.90 16 25 C -0.23 -7.50 10.86 22.16 0.24 -7.26 16 26 C -0.20 -6.17 10.86 22.16 0.24 -5.93 16 27 C -0.03 -1.02 11.24 83.17 0.93 -0.08 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.39 8.03 -2.38 -0.02 2.37 16 32 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 33 H 0.01 0.61 6.97 -2.39 -0.02 0.60 16 34 H 0.01 0.68 7.22 -2.39 -0.02 0.66 16 35 H 0.04 1.34 7.83 -2.39 -0.02 1.32 16 36 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.40 13.20 6.28 -92.71 -0.58 12.61 16 38 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.15 5.32 7.44 -2.91 -0.02 5.29 16 41 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -75.00 368.82 4.06 -70.94 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.44 Total: 27.40 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 7.59 Total: 1.32 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -4.69 Total: -127.02 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.25 Total: 5.55 kcal Total: -75.00 4.06 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275614889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.261 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds