Wall clock time and date at job start Tue Mar 31 2020 16:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28055 * 124.24155 * 2 1 4 4 C 1.34419 * 117.91532 * 179.97438 * 3 2 1 5 5 C 1.41242 * 129.48338 * 180.02562 * 4 3 2 6 6 C 1.35760 * 120.63171 * 180.02562 * 5 4 3 7 7 C 1.40187 * 120.61877 * 0.02562 * 6 5 4 8 8 C 1.47591 * 120.12734 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00057 * 155.68865 * 8 7 6 10 10 N 1.34778 * 119.99969 * 335.41046 * 8 7 6 11 11 C 1.46502 * 119.99544 * 354.86419 * 10 8 7 12 12 C 1.46499 * 120.00151 * 174.86241 * 10 8 7 13 13 C 1.52997 * 109.46673 * 90.00030 * 12 10 8 14 14 C 1.53007 * 109.46969 * 179.97438 * 13 12 10 15 15 N 1.46494 * 109.47104 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99987 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99845 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00333 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00329 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47124 * 89.99334 * 20 18 16 22 22 H 1.48497 * 109.47055 * 209.99309 * 20 18 16 23 23 H 1.48499 * 109.47172 * 329.99636 * 20 18 16 24 24 C 1.39184 * 119.74764 * 0.25269 * 7 6 5 25 25 C 1.38914 * 119.84362 * 359.49304 * 24 7 6 26 26 S 1.70643 * 124.24108 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47262 * 90.01857 * 1 2 3 28 28 H 1.09001 * 109.47387 * 210.02262 * 1 2 3 29 29 H 1.09008 * 109.46819 * 330.02211 * 1 2 3 30 30 H 1.07998 * 119.68716 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.68720 * 179.97438 * 6 5 4 32 32 H 1.09005 * 109.46712 * 95.78398 * 11 10 8 33 33 H 1.09001 * 109.46634 * 215.77993 * 11 10 8 34 34 H 1.08998 * 109.47467 * 335.78110 * 11 10 8 35 35 H 1.08999 * 109.47251 * 210.00035 * 12 10 8 36 36 H 1.08999 * 109.47244 * 330.00477 * 12 10 8 37 37 H 1.08999 * 109.47286 * 299.99983 * 13 12 10 38 38 H 1.09002 * 109.47631 * 60.00078 * 13 12 10 39 39 H 1.08999 * 109.47185 * 300.00146 * 14 13 12 40 40 H 1.09007 * 109.46875 * 60.00130 * 14 13 12 41 41 H 0.96996 * 120.00578 * 0.02562 * 15 14 13 42 42 H 0.97002 * 119.99492 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.07615 * 179.75064 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8950 0.0011 6 6 5.8865 1.5396 0.0011 7 6 6.2597 0.1883 -0.0001 8 6 7.6874 -0.1859 -0.0007 9 8 8.0323 -1.2686 0.4318 10 7 8.6083 0.6703 -0.4859 11 6 8.1837 1.9235 -1.1149 12 6 10.0337 0.3480 -0.3842 13 6 10.4714 -0.4266 -1.6289 14 6 11.9603 -0.7628 -1.5231 15 7 12.3792 -1.5050 -2.7146 16 6 13.6790 -1.9163 -2.8432 17 1 14.3954 -1.6931 -2.0664 18 6 14.0761 -2.6192 -3.9725 19 7 13.2032 -2.8907 -4.9194 20 14 15.8494 -3.1796 -4.1483 21 1 16.0018 -4.5331 -3.5564 22 1 16.2139 -3.2246 -5.5871 23 1 16.7421 -2.2267 -3.4410 24 6 5.2788 -0.7991 -0.0066 25 6 3.9368 -0.4404 -0.0012 26 16 2.4671 -1.4107 0.0006 27 1 -0.3633 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8903 0.5135 30 1 4.3058 2.9406 0.0008 31 1 6.6484 2.3050 0.0012 32 1 8.2189 2.7286 -0.3809 33 1 8.8512 2.1582 -1.9440 34 1 7.1651 1.8160 -1.4877 35 1 10.6103 1.2699 -0.3086 36 1 10.2060 -0.2620 0.5025 37 1 9.8948 -1.3486 -1.7045 38 1 10.2991 0.1833 -2.5157 39 1 12.5365 0.1593 -1.4477 40 1 12.1329 -1.3727 -0.6362 41 1 11.7359 -1.7052 -3.4124 42 1 13.4806 -3.3822 -5.7083 43 1 5.5604 -1.8417 -0.0116 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276311943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:59 Heat of formation + Delta-G solvation = 51.261043 kcal Electronic energy + Delta-G solvation = -24706.866515 eV Core-core repulsion = 21072.699976 eV Total energy + Delta-G solvation = -3634.166539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.13040 -39.89802 -37.23396 -36.28720 -34.88980 -32.67973 -31.84426 -31.60256 -30.00487 -28.67315 -27.30124 -25.50963 -24.47637 -23.52747 -22.42530 -21.49528 -20.93851 -19.99484 -18.67906 -17.80607 -17.02887 -16.67817 -16.03415 -15.83020 -15.54684 -15.25276 -14.93395 -14.46747 -14.36190 -14.21570 -13.82978 -13.77344 -13.54562 -13.26029 -13.19995 -13.05365 -12.89933 -12.76691 -12.18113 -12.03140 -11.86079 -11.58592 -11.18755 -10.91327 -10.82870 -10.73383 -10.56709 -10.38632 -10.11407 -10.08003 -9.95030 -9.68866 -9.02714 -8.83356 -8.77606 -8.52220 -6.87989 -5.72532 -3.01188 -0.24845 0.72109 0.76189 1.25914 1.61413 2.67120 2.83846 3.37073 3.38843 3.46522 3.51075 3.53017 4.13446 4.17768 4.42552 4.62021 4.63295 4.71848 4.85357 4.88156 4.90716 5.04915 5.07334 5.21696 5.33994 5.36155 5.39365 5.48222 5.58659 5.61534 5.69033 5.71345 5.81273 5.91317 6.08629 6.14381 6.32015 6.41426 6.49204 6.89035 6.91118 7.14187 7.22274 7.73431 8.01433 8.46461 9.57192 10.16060 10.50555 11.50569 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.001924 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.011679 B =14550.969740 C =15192.228239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 N -0.474 5.474 4 C 0.105 3.895 5 C -0.075 4.075 6 C -0.093 4.093 7 C -0.115 4.115 8 C 0.557 3.443 9 O -0.525 6.525 10 N -0.607 5.607 11 C 0.061 3.939 12 C 0.120 3.880 13 C -0.140 4.140 14 C 0.156 3.844 15 N -0.733 5.733 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.005 4.005 25 C -0.197 4.197 26 S 0.116 5.884 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.614 12.051 11.752 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 N -0.188 5.188 4 C -0.017 4.017 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.122 4.122 8 C 0.345 3.655 9 O -0.401 6.401 10 N -0.339 5.339 11 C -0.082 4.082 12 C -0.002 4.002 13 C -0.179 4.179 14 C 0.028 3.972 15 N -0.377 5.377 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.028 4.028 25 C -0.316 4.316 26 S 0.373 5.627 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.176 0.824 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.816 10.898 12.015 32.200 hybrid contribution 1.367 0.327 -0.524 1.500 sum -26.448 11.226 11.492 30.945 Atomic orbital electron populations 1.20603 0.84601 1.04738 1.04508 1.26880 1.02005 0.91044 0.99087 1.66171 1.04098 1.31325 1.17230 1.19355 0.89182 0.91716 1.01419 1.20308 0.90125 0.98657 1.00461 1.21625 0.96667 0.95979 0.97149 1.19852 0.93339 0.93760 1.05282 1.18102 0.84962 0.84124 0.78326 1.90839 1.81214 1.21339 1.46744 1.47735 1.07112 1.20521 1.58553 1.22441 1.02170 0.85417 0.98131 1.21547 0.78225 1.00438 0.99984 1.22062 0.98255 1.00571 0.96984 1.20543 0.90722 0.94675 0.91238 1.42349 1.09427 1.66088 1.19876 1.19255 0.86693 1.28427 1.02603 0.91129 1.24762 0.97937 1.01454 0.97056 1.69672 1.33255 1.45585 1.09813 0.86163 0.84482 0.78604 0.76795 1.21716 1.21788 1.20757 1.20425 0.88204 1.00434 0.93694 1.23734 0.98804 0.96839 1.12184 1.84087 0.95190 1.09993 1.73452 0.88906 0.89536 0.88823 0.84132 0.82367 0.91845 0.90471 0.89641 0.90164 0.89622 0.91421 0.91949 0.96383 0.96187 0.78323 0.93551 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.44 36.00 0.38 0.03 16 2 C 0.09 0.77 7.29 -13.85 -0.10 0.67 16 3 N -0.47 -4.98 10.56 -8.96 -0.09 -5.07 16 4 C 0.10 1.13 7.00 -84.88 -0.59 0.54 16 5 C -0.07 -0.65 10.03 -39.33 -0.39 -1.05 16 6 C -0.09 -0.79 7.43 -39.74 -0.30 -1.09 16 7 C -0.12 -1.31 5.49 -105.00 -0.58 -1.89 16 8 C 0.56 7.72 7.48 -12.44 -0.09 7.63 16 9 O -0.52 -9.34 16.23 5.29 0.09 -9.26 16 10 N -0.61 -7.24 2.87 -182.79 -0.53 -7.76 16 11 C 0.06 0.47 8.69 59.85 0.52 0.99 16 12 C 0.12 1.61 5.39 -4.04 -0.02 1.59 16 13 C -0.14 -2.39 5.65 -26.73 -0.15 -2.54 16 14 C 0.16 3.27 6.26 -4.04 -0.03 3.24 16 15 N -0.73 -19.51 5.60 -59.91 -0.34 -19.85 16 16 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 17 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 20 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.00 -0.05 9.61 -38.98 -0.37 -0.43 16 25 C -0.20 -2.15 6.54 -38.61 -0.25 -2.40 16 26 S 0.12 0.99 23.11 -107.50 -2.48 -1.50 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.16 0.93 4.40 -52.49 -0.23 0.70 16 32 H 0.06 0.33 7.13 -51.93 -0.37 -0.04 16 33 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.09 0.60 5.11 -51.93 -0.27 0.33 16 35 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.09 1.25 7.50 -51.93 -0.39 0.86 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 42 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.14 1.69 7.83 -52.49 -0.41 1.28 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -36.42 372.12 -10.02 -46.45 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.75 Total: 4.24 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.23 Total: -2.37 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.23 Total: -61.08 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.48 Total: -1.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.42 -10.02 -46.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276311943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.708 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds