Wall clock time and date at job start Tue Mar 31 2020 16:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28055 * 124.24155 * 2 1 4 4 C 1.34419 * 117.91532 * 179.97438 * 3 2 1 5 5 C 1.41242 * 129.48338 * 180.02562 * 4 3 2 6 6 C 1.35760 * 120.63171 * 180.02562 * 5 4 3 7 7 C 1.40187 * 120.61877 * 0.02562 * 6 5 4 8 8 C 1.47591 * 120.12734 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00057 * 155.68865 * 8 7 6 10 10 N 1.34778 * 119.99969 * 335.41046 * 8 7 6 11 11 C 1.46502 * 119.99544 * 354.86419 * 10 8 7 12 12 C 1.46499 * 120.00151 * 174.86241 * 10 8 7 13 13 C 1.52997 * 109.46673 * 90.00030 * 12 10 8 14 14 C 1.53007 * 109.46969 * 179.97438 * 13 12 10 15 15 N 1.46494 * 109.47104 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99987 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99845 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00333 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00329 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47124 * 89.99334 * 20 18 16 22 22 H 1.48497 * 109.47055 * 209.99309 * 20 18 16 23 23 H 1.48499 * 109.47172 * 329.99636 * 20 18 16 24 24 C 1.39184 * 119.74764 * 0.25269 * 7 6 5 25 25 C 1.38914 * 119.84362 * 359.49304 * 24 7 6 26 26 S 1.70643 * 124.24108 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47262 * 90.01857 * 1 2 3 28 28 H 1.09001 * 109.47387 * 210.02262 * 1 2 3 29 29 H 1.09008 * 109.46819 * 330.02211 * 1 2 3 30 30 H 1.07998 * 119.68716 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.68720 * 179.97438 * 6 5 4 32 32 H 1.09005 * 109.46712 * 95.78398 * 11 10 8 33 33 H 1.09001 * 109.46634 * 215.77993 * 11 10 8 34 34 H 1.08998 * 109.47467 * 335.78110 * 11 10 8 35 35 H 1.08999 * 109.47251 * 210.00035 * 12 10 8 36 36 H 1.08999 * 109.47244 * 330.00477 * 12 10 8 37 37 H 1.08999 * 109.47286 * 299.99983 * 13 12 10 38 38 H 1.09002 * 109.47631 * 60.00078 * 13 12 10 39 39 H 1.08999 * 109.47185 * 300.00146 * 14 13 12 40 40 H 1.09007 * 109.46875 * 60.00130 * 14 13 12 41 41 H 0.96996 * 120.00578 * 0.02562 * 15 14 13 42 42 H 0.97002 * 119.99492 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.07615 * 179.75064 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8950 0.0011 6 6 5.8865 1.5396 0.0011 7 6 6.2597 0.1883 -0.0001 8 6 7.6874 -0.1859 -0.0007 9 8 8.0323 -1.2686 0.4318 10 7 8.6083 0.6703 -0.4859 11 6 8.1837 1.9235 -1.1149 12 6 10.0337 0.3480 -0.3842 13 6 10.4714 -0.4266 -1.6289 14 6 11.9603 -0.7628 -1.5231 15 7 12.3792 -1.5050 -2.7146 16 6 13.6790 -1.9163 -2.8432 17 1 14.3954 -1.6931 -2.0664 18 6 14.0761 -2.6192 -3.9725 19 7 13.2032 -2.8907 -4.9194 20 14 15.8494 -3.1796 -4.1483 21 1 16.0018 -4.5331 -3.5564 22 1 16.2139 -3.2246 -5.5871 23 1 16.7421 -2.2267 -3.4410 24 6 5.2788 -0.7991 -0.0066 25 6 3.9368 -0.4404 -0.0012 26 16 2.4671 -1.4107 0.0006 27 1 -0.3633 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8903 0.5135 30 1 4.3058 2.9406 0.0008 31 1 6.6484 2.3050 0.0012 32 1 8.2189 2.7286 -0.3809 33 1 8.8512 2.1582 -1.9440 34 1 7.1651 1.8160 -1.4877 35 1 10.6103 1.2699 -0.3086 36 1 10.2060 -0.2620 0.5025 37 1 9.8948 -1.3486 -1.7045 38 1 10.2991 0.1833 -2.5157 39 1 12.5365 0.1593 -1.4477 40 1 12.1329 -1.3727 -0.6362 41 1 11.7359 -1.7052 -3.4124 42 1 13.4806 -3.3822 -5.7083 43 1 5.5604 -1.8417 -0.0116 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276311943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:54 Heat of formation + Delta-G solvation = 26.839333 kcal Electronic energy + Delta-G solvation = -24707.925519 eV Core-core repulsion = 21072.699976 eV Total energy + Delta-G solvation = -3635.225544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94514 -40.80002 -38.04444 -37.57121 -36.51636 -34.21372 -32.83610 -32.38566 -31.52796 -29.53855 -28.19428 -26.96625 -25.24391 -24.97442 -23.65931 -22.53843 -22.12945 -20.92625 -19.43056 -19.16752 -18.65572 -17.66330 -16.82158 -16.79423 -16.55539 -16.32459 -16.13024 -15.93866 -15.49137 -15.26672 -15.08432 -14.85676 -14.49427 -14.39004 -14.05660 -13.94195 -13.80337 -13.48035 -13.37711 -13.17940 -12.82656 -12.79011 -12.68701 -12.42477 -12.32222 -12.06864 -11.89884 -11.83581 -11.80928 -11.28621 -11.07818 -10.95877 -10.79082 -9.85803 -9.69059 -9.25955 -9.04055 -7.97619 -5.27743 -0.99228 -0.02053 0.07726 0.56992 0.83546 1.45693 1.48790 1.57186 1.72900 1.91938 2.54797 2.56830 2.78856 3.31258 3.35891 3.44263 3.82521 3.85105 3.95702 3.99683 4.04983 4.16363 4.27918 4.37150 4.49237 4.54483 4.59027 4.64172 4.66772 4.67326 4.72723 4.84267 4.87802 4.92137 4.96888 5.06737 5.12943 5.27499 5.29436 5.41725 5.46850 5.52516 6.24444 6.26085 6.45088 6.99217 7.29772 8.05357 8.28469 9.26326 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.001924 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.011679 B =14550.969740 C =15192.228239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.101 3.899 3 N -0.498 5.498 4 C 0.093 3.907 5 C -0.073 4.073 6 C -0.078 4.078 7 C -0.129 4.129 8 C 0.551 3.449 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.050 3.950 12 C 0.128 3.872 13 C -0.123 4.123 14 C 0.154 3.846 15 N -0.750 5.750 16 C -0.249 4.249 17 H 0.079 0.921 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.980 3.020 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.265 1.265 24 C -0.019 4.019 25 C -0.221 4.221 26 S 0.126 5.874 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.169 0.831 31 H 0.191 0.809 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.014 0.986 41 H 0.371 0.629 42 H 0.252 0.748 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.327 14.611 12.331 34.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.182 4.182 3 N -0.214 5.214 4 C -0.028 4.028 5 C -0.094 4.094 6 C -0.099 4.099 7 C -0.136 4.136 8 C 0.341 3.659 9 O -0.460 6.460 10 N -0.333 5.333 11 C -0.091 4.091 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.028 3.972 15 N -0.392 5.392 16 C -0.381 4.381 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.808 3.192 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.190 1.190 24 C -0.042 4.042 25 C -0.340 4.340 26 S 0.382 5.618 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.186 0.814 31 H 0.207 0.793 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.203 0.797 42 H 0.060 0.940 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -28.536 13.516 12.621 34.004 hybrid contribution 1.459 -0.454 -0.677 1.671 sum -27.077 13.062 11.944 32.349 Atomic orbital electron populations 1.20844 0.81681 1.06117 1.05917 1.27634 1.03560 0.90281 0.96701 1.66268 1.03978 1.32091 1.19026 1.19800 0.89970 0.92031 1.01042 1.20663 0.89638 0.99644 0.99419 1.21869 0.97407 0.95002 0.95600 1.19750 0.91656 0.95217 1.06937 1.18551 0.86187 0.83563 0.77605 1.90803 1.82158 1.23683 1.49352 1.47807 1.06119 1.21525 1.57864 1.22809 1.02758 0.84216 0.99278 1.21399 0.79726 1.01250 0.97111 1.21874 0.95301 0.99758 0.99312 1.20718 0.93282 0.94439 0.88803 1.42616 1.08648 1.66768 1.21201 1.19706 0.87858 1.27855 1.02654 0.90319 1.25681 1.02427 1.02147 0.96959 1.69841 1.35373 1.46736 1.10359 0.85051 0.79446 0.78166 0.76555 1.21529 1.21935 1.18993 1.20374 0.89083 0.99975 0.94803 1.23879 0.99051 0.97872 1.13200 1.84018 0.94318 1.10120 1.73294 0.87269 0.87473 0.88050 0.81374 0.79260 0.88065 0.89785 0.88785 0.86539 0.91197 0.94661 0.91331 0.94480 0.96782 0.79731 0.93950 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.44 71.23 0.74 0.23 16 2 C 0.10 1.53 7.29 88.66 0.65 2.18 16 3 N -0.50 -9.83 10.56 -182.20 -1.92 -11.76 16 4 C 0.09 1.93 7.00 39.95 0.28 2.21 16 5 C -0.07 -1.12 10.03 22.43 0.23 -0.90 16 6 C -0.08 -1.16 7.43 22.17 0.16 -1.00 16 7 C -0.13 -2.94 5.49 -20.11 -0.11 -3.05 16 8 C 0.55 15.61 7.48 86.71 0.65 16.26 16 9 O -0.58 -21.99 16.23 -3.99 -0.06 -22.05 16 10 N -0.60 -13.64 2.87 -850.47 -2.44 -16.09 16 11 C 0.05 0.61 8.69 127.77 1.11 1.72 16 12 C 0.13 3.30 5.39 86.38 0.47 3.77 16 13 C -0.12 -4.24 5.65 30.60 0.17 -4.07 16 14 C 0.15 6.43 6.26 86.38 0.54 6.97 16 15 N -0.75 -40.50 5.60 -343.45 -1.92 -42.42 16 16 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 18 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 19 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 20 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 C -0.02 -0.48 9.61 22.66 0.22 -0.26 16 25 C -0.22 -4.91 6.54 22.90 0.15 -4.76 16 26 S 0.13 2.12 23.11 -56.49 -1.31 0.81 16 27 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.19 1.49 4.40 -2.91 -0.01 1.48 16 32 H 0.10 0.55 7.13 -2.38 -0.02 0.53 16 33 H 0.08 0.99 8.11 -2.39 -0.02 0.97 16 34 H 0.09 1.04 5.11 -2.39 -0.01 1.03 16 35 H 0.12 2.20 8.07 -2.39 -0.02 2.18 16 36 H 0.07 2.06 7.50 -2.39 -0.02 2.04 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.37 21.43 7.67 -92.71 -0.71 20.72 16 42 H 0.25 15.39 8.31 -92.71 -0.77 14.61 16 43 H 0.13 3.41 7.83 -2.91 -0.02 3.38 16 Total: -1.00 -81.98 372.12 1.55 -80.43 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.34 Total: 21.83 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.56 Total: 1.32 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -6.01 Total: -131.69 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.31 Total: 0.81 kcal Total: -81.98 1.55 -80.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276311943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.269 kcal (2) G-P(sol) polarization free energy of solvation -81.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds