Wall clock time and date at job start Tue Mar 31 2020 18:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46808 * 2 1 4 4 C 1.52993 * 109.46990 * 239.99763 * 2 1 3 5 5 C 1.53000 * 109.47196 * 174.99832 * 4 2 1 6 6 C 1.53001 * 109.47130 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46933 * 180.02562 * 6 5 4 8 8 C 1.36932 * 120.00244 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99541 * 359.97438 * 8 7 6 10 10 C 1.38807 * 120.00479 * 180.02562 * 8 7 6 11 11 N 1.31618 * 120.00564 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99916 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46728 * 90.00229 * 12 10 8 14 14 H 1.48493 * 109.47367 * 210.00594 * 12 10 8 15 15 H 1.48503 * 109.46995 * 330.00624 * 12 10 8 16 16 N 1.46500 * 109.46823 * 119.99656 * 2 1 3 17 17 C 1.34772 * 120.00158 * 274.99768 * 16 2 1 18 18 O 1.21623 * 120.00293 * 0.02562 * 17 16 2 19 19 C 1.47194 * 120.00004 * 180.02562 * 17 16 2 20 20 C 1.33790 * 124.65111 * 180.02562 * 19 17 16 21 21 C 1.40097 * 115.50365 * 179.73066 * 20 19 17 22 22 C 1.41721 * 129.98745 * 179.57976 * 21 20 19 23 23 C 1.36039 * 119.33678 * 180.36246 * 22 21 20 24 24 N 1.32317 * 121.57995 * 0.30278 * 23 22 21 25 25 C 1.31358 * 122.05318 * 359.97223 * 24 23 22 26 26 C 1.39727 * 120.59927 * 0.02562 * 25 24 23 27 27 S 1.75536 * 124.65107 * 359.97438 * 19 17 16 28 28 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46783 * 300.00119 * 1 2 3 30 30 H 1.09001 * 109.46988 * 60.00139 * 1 2 3 31 31 H 1.08996 * 109.47223 * 295.00145 * 4 2 1 32 32 H 1.09000 * 109.47143 * 54.99905 * 4 2 1 33 33 H 1.08996 * 109.47289 * 300.00272 * 5 4 2 34 34 H 1.09000 * 109.46491 * 60.00022 * 5 4 2 35 35 H 1.08998 * 109.47138 * 299.99989 * 6 5 4 36 36 H 1.09000 * 109.47217 * 60.00710 * 6 5 4 37 37 H 0.97003 * 120.00082 * 0.02562 * 7 6 5 38 38 H 0.96996 * 120.00553 * 179.97438 * 11 10 8 39 39 H 0.96995 * 119.99625 * 95.00510 * 16 2 1 40 40 H 1.08000 * 122.24874 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.33442 * 0.64354 * 22 21 20 42 42 H 1.08002 * 119.21330 * 180.27290 * 23 22 21 43 43 H 1.08003 * 119.69651 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3352 -2.5626 7 7 5.5350 -1.2323 -2.6240 8 6 6.2188 -1.8066 -3.6621 9 1 5.6817 -2.3358 -4.4353 10 6 7.6022 -1.7096 -3.7200 11 7 8.2596 -2.2621 -4.7175 12 14 8.5313 -0.7949 -2.3822 13 1 8.8914 -1.7402 -1.2949 14 1 9.7676 -0.2036 -2.9538 15 1 7.6731 0.2861 -1.8342 16 7 2.0183 -0.6905 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8575 1.1618 2.4119 19 6 2.6382 -0.7119 3.5589 20 6 2.8009 -0.1370 4.7560 21 6 3.2752 -0.9792 5.7701 22 6 3.5620 -0.6965 7.1289 23 6 4.0267 -1.6906 7.9328 24 7 4.2238 -2.9165 7.4755 25 6 3.9826 -3.2415 6.2258 26 6 3.5029 -2.2890 5.3231 27 16 3.0895 -2.4072 3.6183 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -1.7715 -1.2055 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4259 35 1 3.7865 -2.3854 -2.5184 36 1 3.6403 -0.8760 -3.4505 37 1 6.0174 -0.7573 -1.9293 38 1 9.2263 -2.1940 -4.7582 39 1 2.2490 -1.6316 1.1527 40 1 2.5777 0.9053 4.9298 41 1 3.4089 0.2972 7.5233 42 1 4.2404 -1.4740 8.9691 43 1 4.1574 -4.2540 5.8930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283190170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:33 Heat of formation + Delta-G solvation = 22.647523 kcal Electronic energy + Delta-G solvation = -24779.228347 eV Core-core repulsion = 21143.821033 eV Total energy + Delta-G solvation = -3635.407314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93563 -40.14242 -37.25235 -36.32512 -35.08274 -32.81831 -31.94882 -31.63790 -30.63540 -29.76360 -26.10867 -25.59156 -24.51149 -22.99504 -22.21941 -21.02681 -20.89392 -20.68841 -19.10117 -17.52600 -17.30935 -17.03310 -16.71347 -16.07150 -15.48989 -15.05187 -14.82374 -14.75559 -14.68512 -14.33248 -14.29590 -13.96849 -13.76118 -13.45994 -13.10312 -12.73380 -12.44753 -12.38841 -12.28639 -12.24277 -11.76356 -11.42628 -11.35120 -11.03598 -10.94189 -10.61133 -10.47156 -10.46148 -10.39545 -10.16635 -10.12546 -9.62983 -9.59446 -9.34666 -8.90103 -8.38699 -7.23849 -5.77583 -3.13058 -0.31037 0.50075 0.79811 1.25702 1.49124 2.69510 2.76200 3.25875 3.37101 3.40384 3.44903 3.93079 4.04708 4.17900 4.37877 4.43601 4.57409 4.58854 4.84777 4.88497 4.98224 5.00942 5.11600 5.23891 5.27852 5.34182 5.45260 5.51832 5.53192 5.60755 5.65781 5.77818 5.86991 5.91456 6.02299 6.03940 6.04954 6.22685 6.23645 6.71385 6.74889 7.08736 7.40759 7.76532 7.98720 8.41692 9.20856 9.93488 10.13313 11.40900 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.002896 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.672338 B = 9664.678486 C =11553.119022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.124 4.124 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 N -0.712 5.712 17 C 0.588 3.412 18 O -0.522 6.522 19 C -0.204 4.204 20 C -0.054 4.054 21 C -0.045 4.045 22 C -0.119 4.119 23 C 0.078 3.922 24 N -0.466 5.466 25 C 0.161 3.839 26 C -0.198 4.198 27 S 0.166 5.834 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.400 0.600 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.804 1.588 24.048 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.162 4.162 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.364 5.364 17 C 0.372 3.628 18 O -0.399 6.399 19 C -0.325 4.325 20 C -0.087 4.087 21 C -0.061 4.061 22 C -0.141 4.141 23 C -0.071 4.071 24 N -0.175 5.175 25 C -0.010 4.010 26 C -0.317 4.317 27 S 0.431 5.569 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.179 0.821 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.655 0.588 23.345 28.683 hybrid contribution 0.667 1.917 1.304 2.412 sum -15.988 2.505 24.648 29.486 Atomic orbital electron populations 1.22182 0.94931 1.02312 1.02713 1.21164 0.94003 0.97837 0.83270 0.88887 1.21863 0.96655 1.01096 0.96610 1.21807 0.94059 1.01503 0.99573 1.20621 0.84912 0.97088 0.94370 1.42734 1.01723 1.66993 1.28896 1.19068 0.89891 1.27328 1.01157 0.89232 1.24677 0.96191 1.00516 0.97822 1.69698 1.07319 1.49336 1.31918 0.86548 0.79770 0.80002 0.82229 1.21048 1.21663 1.20372 1.46011 1.66788 1.14001 1.09553 1.17034 0.77732 0.86155 0.81871 1.90831 1.49998 1.14700 1.84413 1.24043 1.10708 0.98915 0.98805 1.20158 0.97095 1.01605 0.89840 1.18354 1.00401 0.92127 0.95215 1.21814 0.99184 1.01544 0.91580 1.22204 0.96348 0.87998 1.00552 1.67736 1.14686 1.20591 1.14478 1.22403 0.92836 0.98355 0.87373 1.24139 1.08555 0.99176 0.99801 1.84260 1.65078 1.04956 1.02572 0.92290 0.92207 0.91125 0.91064 0.89686 0.91858 0.92189 0.95638 0.95596 0.80725 0.93048 0.76514 0.82229 0.83882 0.82093 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.14 1.44 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.12 -1.29 4.75 -26.73 -0.13 -1.42 16 5 C -0.13 -1.87 5.22 -26.73 -0.14 -2.01 16 6 C 0.16 2.94 6.26 -4.04 -0.03 2.92 16 7 N -0.76 -18.21 5.41 -59.91 -0.32 -18.53 16 8 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 9 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 10 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 11 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 12 Si 0.88 22.41 27.74 -169.99 -4.71 17.69 16 13 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 16 N -0.71 -7.29 4.52 -54.96 -0.25 -7.54 16 17 C 0.59 6.99 7.76 -12.63 -0.10 6.89 16 18 O -0.52 -7.71 16.39 5.26 0.09 -7.62 16 19 C -0.20 -2.11 6.33 -37.51 -0.24 -2.35 16 20 C -0.05 -0.53 9.81 -40.45 -0.40 -0.92 16 21 C -0.05 -0.42 5.91 -107.11 -0.63 -1.05 16 22 C -0.12 -0.87 10.13 -39.04 -0.40 -1.26 16 23 C 0.08 0.58 11.06 -18.13 -0.20 0.38 16 24 N -0.47 -4.34 10.34 -13.41 -0.14 -4.48 16 25 C 0.16 1.39 11.24 -17.20 -0.19 1.20 16 26 C -0.20 -1.82 6.54 -38.26 -0.25 -2.07 16 27 S 0.17 1.44 22.26 -107.50 -2.39 -0.96 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.36 8.49 5.53 -40.82 -0.23 8.27 16 38 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.40 3.50 7.65 -40.82 -0.31 3.19 16 40 H 0.16 1.40 7.96 -52.49 -0.42 0.99 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -35.11 376.55 -10.05 -45.16 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.99 Total: 6.09 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.77 Total: -6.66 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.06 Total: -59.38 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.39 Total: -0.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.11 -10.05 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.806 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds