Wall clock time and date at job start Tue Mar 31 2020 18:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46808 * 2 1 4 4 C 1.52993 * 109.46990 * 239.99763 * 2 1 3 5 5 C 1.53000 * 109.47196 * 174.99832 * 4 2 1 6 6 C 1.53001 * 109.47130 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46933 * 180.02562 * 6 5 4 8 8 C 1.36932 * 120.00244 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99541 * 359.97438 * 8 7 6 10 10 C 1.38807 * 120.00479 * 180.02562 * 8 7 6 11 11 N 1.31618 * 120.00564 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99916 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46728 * 90.00229 * 12 10 8 14 14 H 1.48493 * 109.47367 * 210.00594 * 12 10 8 15 15 H 1.48503 * 109.46995 * 330.00624 * 12 10 8 16 16 N 1.46500 * 109.46823 * 119.99656 * 2 1 3 17 17 C 1.34772 * 120.00158 * 274.99768 * 16 2 1 18 18 O 1.21623 * 120.00293 * 0.02562 * 17 16 2 19 19 C 1.47194 * 120.00004 * 180.02562 * 17 16 2 20 20 C 1.33790 * 124.65111 * 180.02562 * 19 17 16 21 21 C 1.40097 * 115.50365 * 179.73066 * 20 19 17 22 22 C 1.41721 * 129.98745 * 179.57976 * 21 20 19 23 23 C 1.36039 * 119.33678 * 180.36246 * 22 21 20 24 24 N 1.32317 * 121.57995 * 0.30278 * 23 22 21 25 25 C 1.31358 * 122.05318 * 359.97223 * 24 23 22 26 26 C 1.39727 * 120.59927 * 0.02562 * 25 24 23 27 27 S 1.75536 * 124.65107 * 359.97438 * 19 17 16 28 28 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46783 * 300.00119 * 1 2 3 30 30 H 1.09001 * 109.46988 * 60.00139 * 1 2 3 31 31 H 1.08996 * 109.47223 * 295.00145 * 4 2 1 32 32 H 1.09000 * 109.47143 * 54.99905 * 4 2 1 33 33 H 1.08996 * 109.47289 * 300.00272 * 5 4 2 34 34 H 1.09000 * 109.46491 * 60.00022 * 5 4 2 35 35 H 1.08998 * 109.47138 * 299.99989 * 6 5 4 36 36 H 1.09000 * 109.47217 * 60.00710 * 6 5 4 37 37 H 0.97003 * 120.00082 * 0.02562 * 7 6 5 38 38 H 0.96996 * 120.00553 * 179.97438 * 11 10 8 39 39 H 0.96995 * 119.99625 * 95.00510 * 16 2 1 40 40 H 1.08000 * 122.24874 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.33442 * 0.64354 * 22 21 20 42 42 H 1.08002 * 119.21330 * 180.27290 * 23 22 21 43 43 H 1.08003 * 119.69651 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3352 -2.5626 7 7 5.5350 -1.2323 -2.6240 8 6 6.2188 -1.8066 -3.6621 9 1 5.6817 -2.3358 -4.4353 10 6 7.6022 -1.7096 -3.7200 11 7 8.2596 -2.2621 -4.7175 12 14 8.5313 -0.7949 -2.3822 13 1 8.8914 -1.7402 -1.2949 14 1 9.7676 -0.2036 -2.9538 15 1 7.6731 0.2861 -1.8342 16 7 2.0183 -0.6905 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8575 1.1618 2.4119 19 6 2.6382 -0.7119 3.5589 20 6 2.8009 -0.1370 4.7560 21 6 3.2752 -0.9792 5.7701 22 6 3.5620 -0.6965 7.1289 23 6 4.0267 -1.6906 7.9328 24 7 4.2238 -2.9165 7.4755 25 6 3.9826 -3.2415 6.2258 26 6 3.5029 -2.2890 5.3231 27 16 3.0895 -2.4072 3.6183 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -1.7715 -1.2055 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4259 35 1 3.7865 -2.3854 -2.5184 36 1 3.6403 -0.8760 -3.4505 37 1 6.0174 -0.7573 -1.9293 38 1 9.2263 -2.1940 -4.7582 39 1 2.2490 -1.6316 1.1527 40 1 2.5777 0.9053 4.9298 41 1 3.4089 0.2972 7.5233 42 1 4.2404 -1.4740 8.9691 43 1 4.1574 -4.2540 5.8930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283190170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:33 Heat of formation + Delta-G solvation = -0.621416 kcal Electronic energy + Delta-G solvation = -24780.237364 eV Core-core repulsion = 21143.821033 eV Total energy + Delta-G solvation = -3636.416331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59135 -40.98632 -38.23049 -37.18155 -36.61165 -34.30955 -33.08313 -32.50930 -31.71342 -30.84735 -27.41454 -26.44251 -25.14948 -24.44748 -23.22653 -22.49329 -21.76210 -21.44574 -19.83286 -19.62778 -17.98969 -17.82030 -17.37613 -16.84926 -16.60037 -16.36310 -15.93130 -15.81295 -15.61853 -15.43120 -15.21713 -14.97675 -14.92139 -14.59675 -14.12319 -13.98419 -13.60970 -13.52730 -13.20825 -13.09973 -12.90778 -12.85502 -12.51448 -12.16381 -12.08696 -12.05831 -11.88727 -11.78038 -11.58130 -11.33769 -11.06273 -10.98469 -10.78755 -10.42034 -10.13265 -9.31009 -9.00842 -8.04904 -5.38176 -1.01237 -0.08756 0.12316 0.57263 0.77955 1.35807 1.38521 1.46020 1.88078 1.92570 2.46021 2.65451 3.26653 3.31413 3.43184 3.49650 3.56100 3.76783 3.79127 3.85795 4.06441 4.13377 4.28711 4.36350 4.43456 4.52185 4.55968 4.59924 4.62287 4.80048 4.82591 4.85276 4.89692 4.96618 5.03557 5.09789 5.27998 5.29516 5.39728 5.46273 5.49847 5.74239 6.19774 6.26465 6.81553 6.91701 7.06305 7.83639 8.01260 9.16705 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.002896 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.672338 B = 9664.678486 C =11553.119022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.120 4.120 6 C 0.152 3.848 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.058 0.942 10 C -0.064 4.064 11 N -0.984 5.984 12 Si 0.954 3.046 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.256 1.256 16 N -0.706 5.706 17 C 0.587 3.413 18 O -0.558 6.558 19 C -0.226 4.226 20 C -0.051 4.051 21 C -0.062 4.062 22 C -0.115 4.115 23 C 0.072 3.928 24 N -0.484 5.484 25 C 0.152 3.848 26 C -0.210 4.210 27 S 0.187 5.813 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.408 0.592 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 1.951 26.247 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.158 4.158 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.367 4.367 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.781 3.219 13 H -0.202 1.202 14 H -0.221 1.221 15 H -0.181 1.181 16 N -0.357 5.357 17 C 0.372 3.628 18 O -0.439 6.439 19 C -0.346 4.346 20 C -0.084 4.084 21 C -0.078 4.078 22 C -0.137 4.137 23 C -0.077 4.077 24 N -0.194 5.194 25 C -0.019 4.019 26 C -0.329 4.329 27 S 0.453 5.547 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.244 0.756 40 H 0.181 0.819 41 H 0.188 0.812 42 H 0.207 0.793 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.517 0.932 25.552 30.994 hybrid contribution 0.851 1.749 0.621 2.041 sum -16.667 2.680 26.173 31.145 Atomic orbital electron populations 1.22121 0.93463 1.03192 1.02703 1.21123 0.95071 0.96856 0.83002 0.90626 1.21788 0.93706 1.02418 0.97207 1.21686 0.96630 1.00289 0.97190 1.20850 0.82024 0.97948 0.96574 1.42809 1.03852 1.66544 1.27679 1.19074 0.90162 1.26169 1.01273 0.92384 1.25512 0.97312 1.02208 1.00551 1.69877 1.07520 1.51577 1.34441 0.85421 0.78106 0.79182 0.79148 1.20195 1.22121 1.18057 1.46004 1.66152 1.14334 1.09205 1.17238 0.77205 0.85795 0.82524 1.90805 1.51786 1.16201 1.85060 1.23981 1.12035 1.00073 0.98509 1.20292 0.96376 1.01895 0.89861 1.18551 1.01030 0.92107 0.96077 1.22145 0.97983 1.02850 0.90677 1.22715 0.95674 0.87413 1.01883 1.67776 1.15125 1.21699 1.14803 1.22725 0.92755 0.99136 0.87252 1.24316 1.08851 0.99549 1.00157 1.84061 1.64825 1.03444 1.02372 0.90936 0.93552 0.89822 0.89340 0.88485 0.92543 0.91972 0.95184 0.95712 0.80311 0.93280 0.75562 0.81913 0.81182 0.79329 0.79956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.67 2.57 44.99 0.12 2.79 16 3 H 0.08 1.72 7.58 -2.39 -0.02 1.70 16 4 C -0.11 -2.07 4.75 30.59 0.15 -1.92 16 5 C -0.12 -3.17 5.22 30.59 0.16 -3.01 16 6 C 0.15 5.46 6.26 86.38 0.54 6.00 16 7 N -0.76 -35.82 5.41 -343.45 -1.86 -37.68 16 8 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 9 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 10 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 11 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 12 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 15 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 16 N -0.71 -13.45 4.52 -446.03 -2.02 -15.47 16 17 C 0.59 13.60 7.76 86.60 0.67 14.27 16 18 O -0.56 -16.48 16.39 -4.10 -0.07 -16.55 16 19 C -0.23 -4.49 6.33 23.61 0.15 -4.34 16 20 C -0.05 -0.95 9.81 21.71 0.21 -0.74 16 21 C -0.06 -1.06 5.91 -21.48 -0.13 -1.19 16 22 C -0.12 -1.43 10.13 22.62 0.23 -1.20 16 23 C 0.07 0.92 11.06 84.11 0.93 1.85 16 24 N -0.48 -8.26 10.34 -196.33 -2.03 -10.29 16 25 C 0.15 2.41 11.24 85.12 0.96 3.37 16 26 C -0.21 -3.61 6.54 23.12 0.15 -3.46 16 27 S 0.19 3.02 22.26 -56.49 -1.26 1.76 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.62 7.75 -2.39 -0.02 1.61 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.36 16.43 5.53 -92.71 -0.51 15.92 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.41 6.39 7.65 -92.71 -0.71 5.68 16 40 H 0.16 2.78 7.96 -2.91 -0.02 2.76 16 41 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -76.48 376.55 0.90 -75.58 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.24 Total: 23.33 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.17 Total: -5.40 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.60 Total: -126.66 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.07 Total: -16.55 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.26 Total: 1.76 kcal Total: -76.48 0.90 -75.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.955 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds