Wall clock time and date at job start Tue Mar 31 2020 18:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47133 * 2 1 4 4 C 1.53004 * 109.46907 * 119.99310 * 2 1 3 5 5 C 1.53007 * 109.47051 * 184.99973 * 4 2 1 6 6 C 1.52993 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.36929 * 120.00223 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00044 * 359.97438 * 8 7 6 10 10 C 1.38817 * 120.00367 * 179.97438 * 8 7 6 11 11 N 1.31610 * 120.00447 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99564 * 359.97438 * 10 8 7 13 13 H 1.48492 * 109.46973 * 89.99827 * 12 10 8 14 14 H 1.48496 * 109.47031 * 210.00207 * 12 10 8 15 15 H 1.48507 * 109.47007 * 330.00102 * 12 10 8 16 16 N 1.46492 * 109.47317 * 239.99714 * 2 1 3 17 17 C 1.34772 * 120.00228 * 85.00107 * 16 2 1 18 18 O 1.21629 * 120.00172 * 0.02562 * 17 16 2 19 19 C 1.47200 * 120.00423 * 179.97438 * 17 16 2 20 20 C 1.33786 * 124.65237 * 179.71897 * 19 17 16 21 21 C 1.40099 * 115.50010 * 180.26837 * 20 19 17 22 22 C 1.41719 * 129.98933 * 180.02562 * 21 20 19 23 23 C 1.36033 * 119.33784 * 180.02562 * 22 21 20 24 24 N 1.32304 * 121.58007 * 359.97438 * 23 22 21 25 25 C 1.31356 * 122.05545 * 0.02562 * 24 23 22 26 26 C 1.39719 * 120.59947 * 359.97438 * 25 24 23 27 27 S 1.75539 * 124.64619 * 0.02845 * 19 17 16 28 28 H 1.08999 * 109.47431 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47537 * 300.00495 * 1 2 3 30 30 H 1.09005 * 109.47392 * 60.00157 * 1 2 3 31 31 H 1.08998 * 109.47559 * 305.00000 * 4 2 1 32 32 H 1.08996 * 109.46806 * 65.00608 * 4 2 1 33 33 H 1.08998 * 109.46961 * 300.00393 * 5 4 2 34 34 H 1.08996 * 109.46797 * 60.00630 * 5 4 2 35 35 H 1.08998 * 109.47401 * 299.99838 * 6 5 4 36 36 H 1.08997 * 109.47513 * 60.00181 * 6 5 4 37 37 H 0.96999 * 119.99580 * 0.02562 * 7 6 5 38 38 H 0.97004 * 120.00384 * 179.97438 * 11 10 8 39 39 H 0.97002 * 119.99930 * 264.99537 * 16 2 1 40 40 H 1.08003 * 122.24728 * 0.24775 * 20 19 17 41 41 H 1.07999 * 120.33127 * 359.97340 * 22 21 20 42 42 H 1.08006 * 119.21289 * 180.02562 * 23 22 21 43 43 H 1.08004 * 119.69818 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3348 2.5628 7 7 5.5348 -1.2310 2.6249 8 6 6.2185 -1.8058 3.6626 9 1 5.6815 -2.3355 4.4357 10 6 7.6020 -1.7079 3.7212 11 7 8.2592 -2.2600 4.7189 12 14 8.5309 -0.7924 2.3839 13 1 8.6619 0.6375 2.7624 14 1 9.8818 -1.3878 2.2232 15 1 7.7873 -0.8992 1.1028 16 7 2.0183 -0.6906 -1.1961 17 6 2.1471 -0.0184 -2.3570 18 8 1.8583 1.1619 -2.4117 19 6 2.6383 -0.7122 -3.5588 20 6 2.7964 -0.1386 -4.7570 21 6 3.2719 -0.9807 -5.7708 22 6 3.5478 -0.7009 -7.1324 23 6 4.0086 -1.6962 -7.9372 24 7 4.2067 -2.9216 -7.4795 25 6 3.9703 -3.2453 -6.2285 26 6 3.4949 -2.2917 -5.3248 27 16 3.0896 -2.4075 -3.6179 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2616 2.1371 32 1 1.7516 -1.7714 1.2057 33 1 3.9994 -1.0727 0.4262 34 1 3.8531 0.4371 1.3575 35 1 3.6401 -0.8756 3.4507 36 1 3.7864 -2.3850 2.5188 37 1 6.0170 -0.7549 1.9309 38 1 9.2260 -2.1919 4.7597 39 1 2.2491 -1.6318 -1.1524 40 1 2.5723 0.9035 -4.9312 41 1 3.3930 0.2922 -7.5274 42 1 4.2187 -1.4806 -8.9744 43 1 4.1458 -4.2576 -5.8954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283190179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:37 Heat of formation + Delta-G solvation = 22.640267 kcal Electronic energy + Delta-G solvation = -24779.074357 eV Core-core repulsion = 21143.666728 eV Total energy + Delta-G solvation = -3635.407629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93671 -40.14165 -37.25220 -36.32502 -35.08301 -32.81799 -31.94930 -31.63842 -30.63604 -29.76429 -26.10848 -25.59126 -24.51171 -22.99487 -22.21928 -21.02689 -20.89352 -20.68818 -19.10097 -17.52622 -17.30941 -17.03325 -16.71314 -16.07075 -15.49019 -15.05116 -14.82261 -14.75554 -14.68474 -14.33226 -14.30097 -13.96790 -13.76003 -13.45975 -13.10408 -12.73525 -12.44967 -12.38253 -12.29085 -12.23684 -11.76355 -11.42846 -11.35834 -11.02520 -10.94507 -10.60989 -10.47653 -10.46191 -10.39113 -10.16604 -10.12856 -9.62928 -9.59473 -9.34673 -8.90112 -8.38665 -7.23914 -5.77637 -3.13040 -0.30982 0.50100 0.79861 1.25773 1.49155 2.69513 2.76217 3.25927 3.37000 3.40342 3.44860 3.93089 4.04706 4.17909 4.37922 4.43584 4.57387 4.58812 4.84774 4.88503 4.98192 5.00961 5.11598 5.23909 5.27836 5.34143 5.45278 5.52044 5.53187 5.60405 5.65790 5.77971 5.86891 5.91525 6.02298 6.03956 6.04884 6.22671 6.23639 6.71376 6.74870 7.08704 7.40795 7.76512 7.98691 8.41616 9.20826 9.93463 10.13333 11.40844 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.002893 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.703706 B = 9677.001223 C =11559.973596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.124 4.124 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 N -0.712 5.712 17 C 0.588 3.412 18 O -0.522 6.522 19 C -0.204 4.204 20 C -0.054 4.054 21 C -0.045 4.045 22 C -0.119 4.119 23 C 0.078 3.922 24 N -0.466 5.466 25 C 0.161 3.839 26 C -0.198 4.198 27 S 0.166 5.834 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.400 0.600 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 1.583 -24.050 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.162 4.162 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.363 5.363 17 C 0.372 3.628 18 O -0.399 6.399 19 C -0.325 4.325 20 C -0.087 4.087 21 C -0.061 4.061 22 C -0.141 4.141 23 C -0.071 4.071 24 N -0.175 5.175 25 C -0.010 4.010 26 C -0.317 4.317 27 S 0.431 5.569 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.179 0.821 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.669 0.579 -23.348 28.693 hybrid contribution 0.669 1.904 -1.311 2.407 sum -16.000 2.483 -24.659 29.500 Atomic orbital electron populations 1.22181 0.94931 1.02313 1.02715 1.21163 0.94001 0.97837 0.83273 0.88882 1.21866 0.96654 1.01095 0.96609 1.21807 0.94059 1.01493 0.99586 1.20619 0.84917 0.97086 0.94370 1.42730 1.01718 1.67119 1.28774 1.19069 0.89924 1.27572 1.00890 0.89231 1.24678 0.96189 1.00539 0.97798 1.69698 1.07329 1.49328 1.31905 0.86546 0.79666 0.80009 0.82303 1.21052 1.21666 1.20396 1.46011 1.66780 1.14008 1.09550 1.17037 0.77725 0.86159 0.81872 1.90832 1.50028 1.14674 1.84414 1.24043 1.10694 0.98942 0.98781 1.20158 0.97086 1.01616 0.89845 1.18353 1.00421 0.92114 0.95206 1.21812 0.99244 1.01551 0.91518 1.22199 0.96328 0.87999 1.00572 1.67730 1.14637 1.20642 1.14486 1.22400 0.92849 0.98355 0.87362 1.24138 1.08621 0.99131 0.99787 1.84263 1.65290 1.04948 1.02372 0.92291 0.91127 0.92203 0.89676 0.91073 0.92193 0.91848 0.95551 0.95684 0.80727 0.93047 0.76514 0.82225 0.83882 0.82093 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.15 0.35 -1.07 16 2 C 0.14 1.44 2.57 -67.94 -0.17 1.26 16 3 H 0.09 1.10 7.58 -51.92 -0.39 0.71 16 4 C -0.12 -1.29 4.75 -26.73 -0.13 -1.42 16 5 C -0.13 -1.87 5.22 -26.73 -0.14 -2.01 16 6 C 0.16 2.94 6.26 -4.04 -0.03 2.92 16 7 N -0.76 -18.21 5.41 -59.91 -0.32 -18.53 16 8 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 9 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 10 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 11 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 12 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 13 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 15 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 16 N -0.71 -7.31 4.52 -54.96 -0.25 -7.56 16 17 C 0.59 7.01 7.76 -12.62 -0.10 6.91 16 18 O -0.52 -7.71 16.39 5.25 0.09 -7.63 16 19 C -0.20 -2.12 6.33 -37.51 -0.24 -2.35 16 20 C -0.05 -0.53 9.81 -40.45 -0.40 -0.92 16 21 C -0.05 -0.42 5.91 -107.11 -0.63 -1.05 16 22 C -0.12 -0.87 10.13 -39.04 -0.40 -1.26 16 23 C 0.08 0.58 11.06 -18.14 -0.20 0.38 16 24 N -0.47 -4.34 10.34 -13.41 -0.14 -4.48 16 25 C 0.16 1.39 11.24 -17.20 -0.19 1.20 16 26 C -0.20 -1.83 6.54 -38.27 -0.25 -2.08 16 27 S 0.17 1.44 22.26 -107.50 -2.39 -0.95 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.36 8.50 5.53 -40.82 -0.23 8.27 16 38 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.40 3.53 7.66 -40.82 -0.31 3.21 16 40 H 0.16 1.41 7.96 -52.48 -0.42 0.99 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.17 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -35.10 376.55 -10.05 -45.15 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.99 Total: 6.11 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.77 Total: -6.66 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.06 Total: -59.40 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.39 Total: -0.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.10 -10.05 -45.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.790 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds