Wall clock time and date at job start Tue Mar 31 2020 18:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47133 * 2 1 4 4 C 1.53004 * 109.46907 * 119.99310 * 2 1 3 5 5 C 1.53007 * 109.47051 * 184.99973 * 4 2 1 6 6 C 1.52993 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.36929 * 120.00223 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00044 * 359.97438 * 8 7 6 10 10 C 1.38817 * 120.00367 * 179.97438 * 8 7 6 11 11 N 1.31610 * 120.00447 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99564 * 359.97438 * 10 8 7 13 13 H 1.48492 * 109.46973 * 89.99827 * 12 10 8 14 14 H 1.48496 * 109.47031 * 210.00207 * 12 10 8 15 15 H 1.48507 * 109.47007 * 330.00102 * 12 10 8 16 16 N 1.46492 * 109.47317 * 239.99714 * 2 1 3 17 17 C 1.34772 * 120.00228 * 85.00107 * 16 2 1 18 18 O 1.21629 * 120.00172 * 0.02562 * 17 16 2 19 19 C 1.47200 * 120.00423 * 179.97438 * 17 16 2 20 20 C 1.33786 * 124.65237 * 179.71897 * 19 17 16 21 21 C 1.40099 * 115.50010 * 180.26837 * 20 19 17 22 22 C 1.41719 * 129.98933 * 180.02562 * 21 20 19 23 23 C 1.36033 * 119.33784 * 180.02562 * 22 21 20 24 24 N 1.32304 * 121.58007 * 359.97438 * 23 22 21 25 25 C 1.31356 * 122.05545 * 0.02562 * 24 23 22 26 26 C 1.39719 * 120.59947 * 359.97438 * 25 24 23 27 27 S 1.75539 * 124.64619 * 0.02845 * 19 17 16 28 28 H 1.08999 * 109.47431 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47537 * 300.00495 * 1 2 3 30 30 H 1.09005 * 109.47392 * 60.00157 * 1 2 3 31 31 H 1.08998 * 109.47559 * 305.00000 * 4 2 1 32 32 H 1.08996 * 109.46806 * 65.00608 * 4 2 1 33 33 H 1.08998 * 109.46961 * 300.00393 * 5 4 2 34 34 H 1.08996 * 109.46797 * 60.00630 * 5 4 2 35 35 H 1.08998 * 109.47401 * 299.99838 * 6 5 4 36 36 H 1.08997 * 109.47513 * 60.00181 * 6 5 4 37 37 H 0.96999 * 119.99580 * 0.02562 * 7 6 5 38 38 H 0.97004 * 120.00384 * 179.97438 * 11 10 8 39 39 H 0.97002 * 119.99930 * 264.99537 * 16 2 1 40 40 H 1.08003 * 122.24728 * 0.24775 * 20 19 17 41 41 H 1.07999 * 120.33127 * 359.97340 * 22 21 20 42 42 H 1.08006 * 119.21289 * 180.02562 * 23 22 21 43 43 H 1.08004 * 119.69818 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3348 2.5628 7 7 5.5348 -1.2310 2.6249 8 6 6.2185 -1.8058 3.6626 9 1 5.6815 -2.3355 4.4357 10 6 7.6020 -1.7079 3.7212 11 7 8.2592 -2.2600 4.7189 12 14 8.5309 -0.7924 2.3839 13 1 8.6619 0.6375 2.7624 14 1 9.8818 -1.3878 2.2232 15 1 7.7873 -0.8992 1.1028 16 7 2.0183 -0.6906 -1.1961 17 6 2.1471 -0.0184 -2.3570 18 8 1.8583 1.1619 -2.4117 19 6 2.6383 -0.7122 -3.5588 20 6 2.7964 -0.1386 -4.7570 21 6 3.2719 -0.9807 -5.7708 22 6 3.5478 -0.7009 -7.1324 23 6 4.0086 -1.6962 -7.9372 24 7 4.2067 -2.9216 -7.4795 25 6 3.9703 -3.2453 -6.2285 26 6 3.4949 -2.2917 -5.3248 27 16 3.0896 -2.4075 -3.6179 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2616 2.1371 32 1 1.7516 -1.7714 1.2057 33 1 3.9994 -1.0727 0.4262 34 1 3.8531 0.4371 1.3575 35 1 3.6401 -0.8756 3.4507 36 1 3.7864 -2.3850 2.5188 37 1 6.0170 -0.7549 1.9309 38 1 9.2260 -2.1919 4.7597 39 1 2.2491 -1.6318 -1.1524 40 1 2.5723 0.9035 -4.9312 41 1 3.3930 0.2922 -7.5274 42 1 4.2187 -1.4806 -8.9744 43 1 4.1458 -4.2576 -5.8954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283190179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:37 Heat of formation + Delta-G solvation = -0.619716 kcal Electronic energy + Delta-G solvation = -24780.082985 eV Core-core repulsion = 21143.666728 eV Total energy + Delta-G solvation = -3636.416257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59320 -40.98666 -38.23040 -37.18280 -36.61180 -34.30994 -33.08353 -32.51073 -31.71458 -30.84841 -27.41406 -26.44326 -25.15064 -24.44726 -23.22746 -22.49316 -21.76174 -21.44670 -19.83400 -19.62792 -17.99105 -17.82121 -17.37674 -16.85046 -16.59800 -16.36347 -15.93403 -15.81361 -15.61942 -15.43200 -15.21991 -14.97255 -14.92252 -14.60097 -14.12316 -13.98248 -13.60605 -13.52960 -13.20903 -13.10101 -12.90878 -12.85939 -12.52633 -12.14961 -12.08095 -12.05064 -11.88944 -11.79669 -11.57454 -11.33897 -11.06412 -10.98705 -10.78817 -10.42100 -10.13367 -9.31076 -9.01025 -8.04961 -5.38156 -1.01324 -0.08821 0.12163 0.57151 0.77861 1.35569 1.38539 1.45883 1.87982 1.92472 2.45953 2.65418 3.26687 3.31283 3.43095 3.49592 3.56014 3.76697 3.79058 3.85783 4.06504 4.13368 4.28621 4.36400 4.43380 4.52183 4.55889 4.59934 4.62212 4.80047 4.82628 4.85227 4.89619 4.96686 5.03486 5.09779 5.27999 5.29527 5.39775 5.46262 5.49785 5.74218 6.19698 6.26265 6.81505 6.91523 7.06265 7.83619 8.01280 9.16645 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.002893 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.703706 B = 9677.001223 C =11559.973596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.120 4.120 6 C 0.152 3.848 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.058 0.942 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.954 3.046 13 H -0.279 1.279 14 H -0.293 1.293 15 H -0.254 1.254 16 N -0.706 5.706 17 C 0.587 3.413 18 O -0.558 6.558 19 C -0.226 4.226 20 C -0.051 4.051 21 C -0.062 4.062 22 C -0.115 4.115 23 C 0.072 3.928 24 N -0.484 5.484 25 C 0.152 3.848 26 C -0.210 4.210 27 S 0.186 5.814 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.408 0.592 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.637 1.932 -26.276 31.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.158 4.158 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.367 4.367 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.781 3.219 13 H -0.205 1.205 14 H -0.220 1.220 15 H -0.178 1.178 16 N -0.357 5.357 17 C 0.372 3.628 18 O -0.438 6.438 19 C -0.346 4.346 20 C -0.084 4.084 21 C -0.078 4.078 22 C -0.137 4.137 23 C -0.077 4.077 24 N -0.194 5.194 25 C -0.019 4.019 26 C -0.329 4.329 27 S 0.452 5.548 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.244 0.756 40 H 0.181 0.819 41 H 0.188 0.812 42 H 0.207 0.793 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.538 0.909 -25.583 31.031 hybrid contribution 0.854 1.745 -0.617 2.039 sum -16.684 2.654 -26.200 31.175 Atomic orbital electron populations 1.22120 0.93464 1.03187 1.02712 1.21124 0.95069 0.96868 0.82995 0.90590 1.21791 0.93709 1.02399 0.97219 1.21686 0.96622 1.00349 0.97146 1.20848 0.82030 0.97917 0.96600 1.42805 1.03843 1.66658 1.27573 1.19075 0.90191 1.26364 1.01054 0.92383 1.25513 0.97311 1.02225 1.00532 1.69876 1.07529 1.51589 1.34408 0.85422 0.77930 0.78389 0.80127 1.20547 1.22007 1.17821 1.46006 1.66146 1.14335 1.09212 1.17240 0.77202 0.85801 0.82523 1.90806 1.51810 1.16167 1.85059 1.23982 1.12033 1.00092 0.98493 1.20292 0.96354 1.01907 0.89861 1.18552 1.01052 0.92091 0.96074 1.22143 0.98038 1.02860 0.90610 1.22713 0.95641 0.87411 1.01911 1.67771 1.15071 1.21750 1.14805 1.22722 0.92768 0.99135 0.87239 1.24313 1.08918 0.99507 1.00129 1.84065 1.65056 1.03455 1.02196 0.90951 0.89812 0.93546 0.88444 0.89387 0.92085 0.92412 0.95618 0.95287 0.80311 0.93279 0.75578 0.81898 0.81178 0.79321 0.79956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.67 2.57 44.99 0.12 2.78 16 3 H 0.08 1.72 7.58 -2.38 -0.02 1.71 16 4 C -0.11 -2.07 4.75 30.60 0.15 -1.92 16 5 C -0.12 -3.17 5.22 30.59 0.16 -3.01 16 6 C 0.15 5.46 6.26 86.38 0.54 6.00 16 7 N -0.76 -35.81 5.41 -343.46 -1.86 -37.67 16 8 C -0.24 -13.60 10.47 84.04 0.88 -12.72 16 9 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 10 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 11 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 12 Si 0.95 46.05 27.74 68.60 1.90 47.95 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 15 H -0.25 -11.09 6.52 99.48 0.65 -10.44 16 16 N -0.71 -13.50 4.52 -446.03 -2.02 -15.52 16 17 C 0.59 13.62 7.76 86.60 0.67 14.30 16 18 O -0.56 -16.48 16.39 -4.12 -0.07 -16.54 16 19 C -0.23 -4.51 6.33 23.61 0.15 -4.36 16 20 C -0.05 -0.95 9.81 21.71 0.21 -0.74 16 21 C -0.06 -1.06 5.91 -21.48 -0.13 -1.19 16 22 C -0.11 -1.43 10.13 22.62 0.23 -1.20 16 23 C 0.07 0.92 11.06 84.11 0.93 1.85 16 24 N -0.48 -8.25 10.34 -196.35 -2.03 -10.28 16 25 C 0.15 2.42 11.24 85.12 0.96 3.37 16 26 C -0.21 -3.62 6.54 23.12 0.15 -3.47 16 27 S 0.19 3.02 22.26 -56.49 -1.26 1.76 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.61 7.75 -2.39 -0.02 1.59 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.36 16.43 5.53 -92.71 -0.51 15.91 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.41 6.43 7.66 -92.71 -0.71 5.72 16 40 H 0.16 2.79 7.96 -2.91 -0.02 2.76 16 41 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -76.46 376.55 0.90 -75.56 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.24 Total: 23.36 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.17 Total: -5.40 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -5.60 Total: -126.69 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.07 Total: -16.54 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.26 Total: 1.76 kcal Total: -76.46 0.90 -75.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.939 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds