Wall clock time and date at job start Tue Mar 31 2020 18:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47475 * 180.02562 * 6 5 4 8 8 C 1.36945 * 120.00229 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99459 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31618 * 120.00468 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99941 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47019 * 89.99771 * 12 10 8 14 14 H 1.48503 * 109.47502 * 209.99751 * 12 10 8 15 15 H 1.48501 * 109.47134 * 330.00115 * 12 10 8 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21593 * 119.99949 * 0.28071 * 17 16 2 19 19 C 1.47587 * 120.00245 * 180.27912 * 17 16 2 20 20 C 1.40198 * 120.12527 * 359.72494 * 19 17 16 21 21 C 1.35753 * 120.61814 * 179.70789 * 20 19 17 22 22 C 1.41246 * 120.62995 * 0.57205 * 21 20 19 23 23 N 1.34412 * 129.47830 * 179.71089 * 22 21 20 24 24 C 1.28054 * 117.91610 * 179.97438 * 23 22 21 25 25 S 1.70652 * 111.51821 * 0.02562 * 24 23 22 26 26 C 1.40140 * 118.74709 * 359.71364 * 22 21 20 27 27 C 1.38921 * 120.41210 * 359.97438 * 26 22 21 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 34 34 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 35 35 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 36 36 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 37 37 H 0.97002 * 119.99926 * 359.97438 * 7 6 5 38 38 H 0.96993 * 120.00676 * 179.97438 * 11 10 8 39 39 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 40 40 H 1.08007 * 119.69194 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.68276 * 180.28315 * 21 20 19 42 42 H 1.08005 * 124.24249 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.07757 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2311 -2.6247 8 6 6.2186 -1.8045 -3.6634 9 1 5.6814 -2.3330 -4.4371 10 6 7.6020 -1.7075 -3.7213 11 7 8.2567 -1.0639 -2.7782 12 14 8.5348 -2.4903 -5.1378 13 1 8.6679 -1.5096 -6.2449 14 1 9.8849 -2.9006 -4.6749 15 1 7.7930 -3.6831 -5.6197 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8631 1.1629 2.4103 19 6 2.6501 -0.7111 3.5593 20 6 2.9788 -2.0727 3.5008 21 6 3.4431 -2.7197 4.6002 22 6 3.5928 -2.0368 5.8275 23 7 4.0257 -2.4965 7.0141 24 6 4.0743 -1.6738 7.9942 25 16 3.5507 -0.1170 7.5313 26 6 3.2586 -0.6771 5.8874 27 6 2.7899 -0.0177 4.7580 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0727 -0.4260 35 1 3.7863 -2.3843 -2.5200 36 1 3.6401 -0.8741 -3.4508 37 1 6.0172 -0.7561 -1.9300 38 1 9.2234 -0.9963 -2.8184 39 1 2.2491 -1.6318 1.1526 40 1 2.8665 -2.6107 2.5711 41 1 3.6962 -3.7677 4.5370 42 1 4.4053 -1.9328 8.9891 43 1 2.5336 1.0301 4.8103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283272075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:50 Heat of formation + Delta-G solvation = 22.125050 kcal Electronic energy + Delta-G solvation = -24811.044271 eV Core-core repulsion = 21175.614300 eV Total energy + Delta-G solvation = -3635.429970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98757 -39.84383 -37.24608 -36.56336 -34.87636 -32.75314 -31.62038 -31.43874 -30.07260 -29.29696 -25.95866 -25.61486 -23.85691 -22.98669 -22.57682 -21.20624 -20.80387 -20.57800 -19.14668 -17.71370 -17.01673 -16.89118 -16.40136 -15.94948 -15.36277 -14.94753 -14.76107 -14.65780 -14.40063 -14.28977 -13.97837 -13.79162 -13.52121 -13.28343 -12.99152 -12.89090 -12.75070 -12.22069 -12.14052 -12.10687 -11.32737 -11.30788 -11.17100 -10.85747 -10.81655 -10.60332 -10.48140 -10.42574 -10.14167 -10.08595 -10.00621 -9.68645 -9.28808 -9.08437 -8.86058 -8.54282 -6.90842 -5.75231 -3.04125 -0.25582 0.74418 0.80261 1.27291 1.61978 2.72289 2.96312 3.44007 3.45360 3.48745 3.50753 3.54507 4.18695 4.38356 4.54998 4.57687 4.72670 4.73489 4.80357 4.99665 5.07232 5.12783 5.39751 5.40469 5.52303 5.58119 5.60458 5.61604 5.71396 5.77332 5.81344 5.93732 6.04609 6.09172 6.14289 6.19065 6.34904 6.40411 6.41812 6.86157 6.89441 7.11799 7.33587 7.70450 8.03012 8.43778 9.54505 10.13574 10.47687 11.47716 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.002414 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.667386 B =11598.305387 C =13416.276882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.713 5.713 17 C 0.562 3.438 18 O -0.536 6.536 19 C -0.115 4.115 20 C -0.075 4.075 21 C -0.066 4.066 22 C 0.100 3.900 23 N -0.467 5.467 24 C 0.070 3.930 25 S 0.114 5.886 26 C -0.194 4.194 27 C -0.005 4.005 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.401 0.599 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.207 0.793 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 -0.400 21.342 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.365 5.365 17 C 0.349 3.651 18 O -0.414 6.414 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.087 4.087 22 C -0.022 4.022 23 N -0.179 5.179 24 C -0.234 4.234 25 S 0.368 5.632 26 C -0.313 4.313 27 C -0.028 4.028 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.223 0.777 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.374 0.709 21.921 27.371 hybrid contribution 0.951 -1.295 -1.203 2.007 sum -15.423 -0.587 20.718 25.835 Atomic orbital electron populations 1.22175 0.95260 1.02096 1.02523 1.21103 0.93719 0.97898 0.83584 0.89073 1.21863 0.96933 1.00805 0.96569 1.21744 0.93589 1.01550 0.99556 1.20646 0.86207 0.96427 0.94189 1.42385 1.00196 1.66300 1.28993 1.19237 0.89437 1.27174 1.01242 0.91219 1.24754 0.96468 1.01262 0.98634 1.69660 1.07196 1.47065 1.34314 0.86187 0.79387 0.78817 0.81791 1.21713 1.21759 1.20771 1.46006 1.66725 1.14152 1.09582 1.17978 0.77712 0.86411 0.82980 1.90791 1.50380 1.15315 1.84923 1.19899 1.03965 0.94360 0.94023 1.20859 0.96800 0.93240 0.98798 1.20313 0.98812 1.00650 0.88908 1.19419 0.99814 0.90071 0.92884 1.66210 1.16640 1.36229 0.98862 1.28260 1.00197 0.92503 1.02486 1.84114 1.63949 1.13985 1.01149 1.23765 1.10215 0.98131 0.99163 1.20414 0.93594 1.00147 0.88642 0.91400 0.92453 0.92275 0.91348 0.90103 0.91891 0.92060 0.96575 0.96501 0.78332 0.93513 0.76323 0.84111 0.83897 0.77688 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.49 37.16 0.35 -1.17 16 2 C 0.14 1.54 2.58 -67.93 -0.17 1.36 16 3 H 0.09 1.18 7.57 -51.93 -0.39 0.79 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.02 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.93 5.60 -59.91 -0.34 -19.26 16 8 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 12 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 N -0.71 -7.51 4.48 -54.83 -0.25 -7.75 16 17 C 0.56 7.01 7.73 -12.45 -0.10 6.91 16 18 O -0.54 -8.37 16.00 5.28 0.08 -8.29 16 19 C -0.12 -1.27 5.87 -105.00 -0.62 -1.88 16 20 C -0.08 -0.69 9.44 -39.74 -0.38 -1.06 16 21 C -0.07 -0.64 10.03 -39.33 -0.39 -1.03 16 22 C 0.10 1.10 7.00 -84.88 -0.59 0.50 16 23 N -0.47 -4.92 10.56 -12.83 -0.14 -5.05 16 24 C 0.07 0.51 12.11 51.19 0.62 1.13 16 25 S 0.11 0.87 23.17 -107.50 -2.49 -1.62 16 26 C -0.19 -2.04 6.54 -38.62 -0.25 -2.29 16 27 C -0.01 -0.05 9.62 -38.98 -0.37 -0.43 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.40 3.38 6.62 -40.82 -0.27 3.11 16 40 H 0.14 0.93 6.38 -52.48 -0.33 0.59 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.21 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.15 1.55 7.64 -52.49 -0.40 1.15 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -35.22 376.88 -10.08 -45.29 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.89 Total: 7.45 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.44 Total: -6.06 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.01 Total: -60.03 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.22 -10.08 -45.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283272075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.416 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds