Wall clock time and date at job start Tue Mar 31 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47475 * 180.02562 * 6 5 4 8 8 C 1.36945 * 120.00229 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99459 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31618 * 120.00468 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99941 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47019 * 89.99771 * 12 10 8 14 14 H 1.48503 * 109.47502 * 209.99751 * 12 10 8 15 15 H 1.48501 * 109.47134 * 330.00115 * 12 10 8 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21593 * 119.99949 * 0.28071 * 17 16 2 19 19 C 1.47587 * 120.00245 * 180.27912 * 17 16 2 20 20 C 1.40198 * 120.12527 * 359.72494 * 19 17 16 21 21 C 1.35753 * 120.61814 * 179.70789 * 20 19 17 22 22 C 1.41246 * 120.62995 * 0.57205 * 21 20 19 23 23 N 1.34412 * 129.47830 * 179.71089 * 22 21 20 24 24 C 1.28054 * 117.91610 * 179.97438 * 23 22 21 25 25 S 1.70652 * 111.51821 * 0.02562 * 24 23 22 26 26 C 1.40140 * 118.74709 * 359.71364 * 22 21 20 27 27 C 1.38921 * 120.41210 * 359.97438 * 26 22 21 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 34 34 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 35 35 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 36 36 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 37 37 H 0.97002 * 119.99926 * 359.97438 * 7 6 5 38 38 H 0.96993 * 120.00676 * 179.97438 * 11 10 8 39 39 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 40 40 H 1.08007 * 119.69194 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.68276 * 180.28315 * 21 20 19 42 42 H 1.08005 * 124.24249 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.07757 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2311 -2.6247 8 6 6.2186 -1.8045 -3.6634 9 1 5.6814 -2.3330 -4.4371 10 6 7.6020 -1.7075 -3.7213 11 7 8.2567 -1.0639 -2.7782 12 14 8.5348 -2.4903 -5.1378 13 1 8.6679 -1.5096 -6.2449 14 1 9.8849 -2.9006 -4.6749 15 1 7.7930 -3.6831 -5.6197 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8631 1.1629 2.4103 19 6 2.6501 -0.7111 3.5593 20 6 2.9788 -2.0727 3.5008 21 6 3.4431 -2.7197 4.6002 22 6 3.5928 -2.0368 5.8275 23 7 4.0257 -2.4965 7.0141 24 6 4.0743 -1.6738 7.9942 25 16 3.5507 -0.1170 7.5313 26 6 3.2586 -0.6771 5.8874 27 6 2.7899 -0.0177 4.7580 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0727 -0.4260 35 1 3.7863 -2.3843 -2.5200 36 1 3.6401 -0.8741 -3.4508 37 1 6.0172 -0.7561 -1.9300 38 1 9.2234 -0.9963 -2.8184 39 1 2.2491 -1.6318 1.1526 40 1 2.8665 -2.6107 2.5711 41 1 3.6962 -3.7677 4.5370 42 1 4.4053 -1.9328 8.9891 43 1 2.5336 1.0301 4.8103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283272075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:49 Heat of formation + Delta-G solvation = -1.349385 kcal Electronic energy + Delta-G solvation = -24812.062199 eV Core-core repulsion = 21175.614300 eV Total energy + Delta-G solvation = -3636.447898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77059 -40.72158 -38.17616 -37.54670 -36.52160 -34.24179 -32.86931 -32.28945 -31.28372 -30.40863 -27.23606 -26.58556 -24.97979 -24.35984 -23.39145 -22.42264 -21.96562 -21.48291 -19.89782 -19.11960 -18.51399 -17.72870 -17.15179 -16.76933 -16.64278 -16.24157 -15.84402 -15.75933 -15.48523 -15.35028 -15.10158 -15.07136 -14.67961 -14.45342 -14.04489 -13.89089 -13.55944 -13.41542 -13.18816 -13.00291 -12.90749 -12.77362 -12.37635 -12.23938 -12.06381 -11.99562 -11.84768 -11.71277 -11.48536 -11.30922 -11.12650 -10.92672 -10.77349 -10.20919 -9.85090 -9.24111 -8.99914 -7.95411 -5.24681 -0.98332 -0.00520 0.14730 0.62213 0.87437 1.47036 1.49188 1.57654 1.87205 2.08996 2.56048 2.64158 2.93836 3.38386 3.45946 3.54664 3.68201 3.91083 3.98777 4.05644 4.08848 4.13287 4.30309 4.36653 4.43769 4.60595 4.67065 4.69101 4.84441 4.88028 4.88698 4.94048 4.98095 5.03329 5.06690 5.14680 5.33718 5.36673 5.43242 5.44676 5.51631 5.56713 6.27161 6.44715 6.46989 7.12422 7.32610 8.10487 8.31897 9.28394 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.002414 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.667386 B =11598.305387 C =13416.276882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.067 0.933 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.267 1.267 16 N -0.703 5.703 17 C 0.561 3.439 18 O -0.576 6.576 19 C -0.131 4.131 20 C -0.068 4.068 21 C -0.075 4.075 22 C 0.087 3.913 23 N -0.500 5.500 24 C 0.082 3.918 25 S 0.144 5.856 26 C -0.219 4.219 27 C -0.014 4.014 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.413 0.587 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.247 0.753 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.239 -2.022 21.433 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.215 1.215 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.355 5.355 17 C 0.349 3.651 18 O -0.457 6.457 19 C -0.138 4.138 20 C -0.090 4.090 21 C -0.096 4.096 22 C -0.035 4.035 23 N -0.213 5.213 24 C -0.221 4.221 25 S 0.399 5.601 26 C -0.338 4.338 27 C -0.037 4.037 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.203 0.797 38 H 0.060 0.940 39 H 0.251 0.749 40 H 0.184 0.816 41 H 0.177 0.823 42 H 0.262 0.738 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.368 -0.944 21.991 28.038 hybrid contribution 1.206 -0.763 -1.129 1.820 sum -16.162 -1.707 20.862 26.445 Atomic orbital electron populations 1.22103 0.93557 1.03204 1.02421 1.21042 0.94944 0.96646 0.83492 0.91520 1.21766 0.93472 1.02430 0.97087 1.21611 0.96558 0.99715 0.97363 1.20869 0.83065 0.97509 0.96212 1.42670 1.02627 1.65958 1.28106 1.19679 0.89984 1.26339 1.01713 0.90433 1.25622 0.97580 1.02532 1.01418 1.69825 1.07042 1.48991 1.36435 0.85115 0.77658 0.78288 0.78562 1.21451 1.22209 1.19121 1.45956 1.65955 1.14643 1.08978 1.18224 0.77147 0.85991 0.83739 1.90763 1.52355 1.17032 1.85594 1.19872 1.05210 0.95259 0.93459 1.21067 0.95767 0.92394 0.99736 1.20581 0.98843 1.01485 0.88709 1.19774 0.99671 0.90396 0.93678 1.66283 1.18492 1.37242 0.99266 1.29006 0.97825 0.91921 1.03344 1.84004 1.63215 1.13792 0.99044 1.23979 1.10826 0.98524 1.00478 1.20450 0.93940 1.00018 0.89246 0.90155 0.90679 0.93769 0.89028 0.88924 0.93664 0.92293 0.95444 0.96254 0.79747 0.94044 0.74913 0.81629 0.82312 0.73753 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.49 71.98 0.68 -1.95 16 2 C 0.14 2.97 2.58 44.99 0.12 3.09 16 3 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 4 C -0.11 -2.21 4.75 30.59 0.15 -2.06 16 5 C -0.11 -3.42 5.22 30.59 0.16 -3.26 16 6 C 0.15 5.73 6.26 86.38 0.54 6.27 16 7 N -0.75 -38.68 5.60 -343.45 -1.92 -40.60 16 8 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 9 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 10 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 11 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 12 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 N -0.70 -14.24 4.48 -445.65 -2.00 -16.24 16 17 C 0.56 14.24 7.73 86.71 0.67 14.91 16 18 O -0.58 -18.82 16.00 -4.01 -0.06 -18.89 16 19 C -0.13 -2.93 5.87 -20.11 -0.12 -3.04 16 20 C -0.07 -1.20 9.44 22.17 0.21 -0.99 16 21 C -0.08 -1.41 10.03 22.43 0.23 -1.18 16 22 C 0.09 1.87 7.00 39.95 0.28 2.15 16 23 N -0.50 -9.96 10.56 -194.44 -2.05 -12.01 16 24 C 0.08 1.06 12.11 130.79 1.58 2.64 16 25 S 0.14 2.06 23.17 -56.49 -1.31 0.75 16 26 C -0.22 -4.61 6.54 22.90 0.15 -4.46 16 27 C -0.01 -0.31 9.62 22.66 0.22 -0.09 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 37 H 0.37 20.56 7.67 -92.71 -0.71 19.85 16 38 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.41 6.21 6.62 -92.71 -0.61 5.60 16 40 H 0.17 1.88 6.38 -2.91 -0.02 1.86 16 41 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.25 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.14 3.21 7.64 -2.91 -0.02 3.19 16 Total: -1.00 -77.18 376.88 0.85 -76.32 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.28 Total: 27.70 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 6.17 Total: -5.14 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -5.69 Total: -129.13 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.31 Total: 0.75 kcal Total: -77.18 0.85 -76.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283272075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.971 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds