Wall clock time and date at job start Tue Mar 31 2020 18:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47271 * 2 1 4 4 C 1.53000 * 109.47015 * 120.00018 * 2 1 3 5 5 C 1.52999 * 109.47182 * 184.99658 * 4 2 1 6 6 C 1.53000 * 109.47182 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47165 * 180.02562 * 6 5 4 8 8 C 1.36936 * 120.00191 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00095 * 0.02562 * 8 7 6 10 10 C 1.38818 * 120.00192 * 179.97438 * 8 7 6 11 11 N 1.31613 * 120.00015 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99617 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47126 * 90.00345 * 12 10 8 14 14 H 1.48504 * 109.47076 * 209.99781 * 12 10 8 15 15 H 1.48501 * 109.47373 * 329.99682 * 12 10 8 16 16 N 1.46502 * 109.46659 * 239.99371 * 2 1 3 17 17 C 1.34772 * 119.99572 * 85.00428 * 16 2 1 18 18 O 1.21589 * 120.00606 * 359.97438 * 17 16 2 19 19 C 1.47594 * 120.00001 * 179.97438 * 17 16 2 20 20 C 1.40198 * 120.12213 * 359.97438 * 19 17 16 21 21 C 1.35754 * 120.61203 * 179.97438 * 20 19 17 22 22 C 1.41242 * 120.63456 * 0.02562 * 21 20 19 23 23 N 1.34413 * 129.47753 * 180.02562 * 22 21 20 24 24 C 1.28064 * 117.91645 * 179.30536 * 23 22 21 25 25 S 1.70645 * 111.51246 * 0.60394 * 24 23 22 26 26 C 1.40141 * 118.74709 * 359.78914 * 22 21 20 27 27 C 1.38914 * 120.40967 * 0.44064 * 26 22 21 28 28 H 1.09003 * 109.46874 * 300.00703 * 1 2 3 29 29 H 1.08994 * 109.47078 * 59.99684 * 1 2 3 30 30 H 1.08994 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47179 * 304.99642 * 4 2 1 32 32 H 1.08996 * 109.47516 * 64.99297 * 4 2 1 33 33 H 1.09000 * 109.47050 * 300.00063 * 5 4 2 34 34 H 1.08996 * 109.47082 * 59.99985 * 5 4 2 35 35 H 1.09005 * 109.46770 * 299.99741 * 6 5 4 36 36 H 1.08996 * 109.47516 * 59.99639 * 6 5 4 37 37 H 0.97004 * 119.99618 * 359.97438 * 7 6 5 38 38 H 0.96997 * 119.99966 * 179.97438 * 11 10 8 39 39 H 0.96995 * 120.00335 * 265.00273 * 16 2 1 40 40 H 1.07995 * 119.69548 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.67808 * 180.02562 * 21 20 19 42 42 H 1.07995 * 124.24634 * 180.16453 * 24 23 22 43 43 H 1.08002 * 120.08089 * 179.81617 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0749 -1.3352 2.5626 7 7 5.5348 -1.2314 2.6246 8 6 6.2186 -1.8055 3.6629 9 1 5.6816 -2.3353 4.4358 10 6 7.6021 -1.7076 3.7213 11 7 8.2593 -2.2599 4.7190 12 14 8.5309 -0.7920 2.3840 13 1 8.6621 0.6379 2.7627 14 1 9.8818 -1.3873 2.2233 15 1 7.7873 -0.8987 1.1030 16 7 2.0183 -0.6908 -1.1961 17 6 2.1470 -0.0185 -2.3571 18 8 1.8575 1.1612 -2.4119 19 6 2.6394 -0.7141 -3.5621 20 6 2.9745 -2.0742 -3.5017 21 6 3.4278 -2.7240 -4.6041 22 6 3.5713 -2.0427 -5.8330 23 7 3.9979 -2.5042 -7.0211 24 6 4.0285 -1.6863 -8.0061 25 16 3.5089 -0.1285 -7.5423 26 6 3.2326 -0.6843 -5.8941 27 6 2.7736 -0.0224 -4.7623 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6054 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2057 33 1 3.9994 -1.0729 0.4260 34 1 3.8532 0.4368 1.3573 35 1 3.6403 -0.8760 3.4505 36 1 3.7864 -2.3854 2.5186 37 1 6.0171 -0.7559 1.9302 38 1 9.2260 -2.1918 4.7596 39 1 2.2489 -1.6319 -1.1526 40 1 2.8702 -2.6100 -2.5699 41 1 3.6812 -3.7719 -4.5406 42 1 4.3499 -1.9478 -9.0034 43 1 2.5169 1.0254 -4.8147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283272076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:54 Heat of formation + Delta-G solvation = 26.206241 kcal Electronic energy + Delta-G solvation = -24910.307012 eV Core-core repulsion = 21275.054016 eV Total energy + Delta-G solvation = -3635.252997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.06064 -39.92269 -37.33304 -36.66150 -35.07018 -32.80756 -31.70358 -31.53532 -30.31960 -29.58076 -26.08898 -25.80770 -23.90933 -22.86771 -22.49813 -21.19948 -20.98595 -20.65322 -19.21662 -17.78338 -17.51428 -16.96926 -16.47500 -16.02466 -15.43730 -15.00428 -14.84295 -14.71955 -14.44544 -14.35120 -14.05748 -13.94947 -13.71070 -13.32982 -13.06659 -12.91918 -12.68268 -12.29547 -12.24520 -12.19279 -11.73208 -11.38510 -11.30733 -10.99305 -10.92581 -10.67286 -10.56160 -10.43583 -10.21378 -10.15288 -10.11307 -9.59362 -9.37012 -9.16183 -8.89215 -8.61287 -7.22992 -5.77009 -3.12320 -0.32639 0.67139 0.73620 1.20856 1.54888 2.64783 2.88089 3.37677 3.37713 3.41115 3.45546 3.47970 4.11740 4.30537 4.48399 4.59016 4.59948 4.66238 4.72393 4.90082 4.99591 5.03888 5.31690 5.33071 5.38627 5.49332 5.53198 5.54554 5.63788 5.66710 5.73776 5.82500 5.90181 5.96973 6.06008 6.06614 6.09442 6.26483 6.33431 6.73302 6.76746 7.05343 7.25253 7.94726 7.99535 8.42364 9.21658 9.94299 10.14180 11.41506 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.002678 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.288410 B =10454.527490 C =12277.571153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 N -0.714 5.714 17 C 0.562 3.438 18 O -0.536 6.536 19 C -0.117 4.117 20 C -0.076 4.076 21 C -0.066 4.066 22 C 0.100 3.900 23 N -0.467 5.467 24 C 0.070 3.930 25 S 0.115 5.885 26 C -0.195 4.195 27 C -0.005 4.005 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.401 0.599 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.207 0.793 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.582 2.290 -25.778 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.366 5.366 17 C 0.349 3.651 18 O -0.414 6.414 19 C -0.124 4.124 20 C -0.098 4.098 21 C -0.087 4.087 22 C -0.021 4.021 23 N -0.180 5.180 24 C -0.234 4.234 25 S 0.369 5.631 26 C -0.313 4.313 27 C -0.028 4.028 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.237 0.763 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.223 0.777 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.648 3.369 -26.289 31.299 hybrid contribution 0.997 -0.442 -0.227 1.114 sum -15.651 2.926 -26.516 30.929 Atomic orbital electron populations 1.22173 0.95142 1.02180 1.02584 1.21110 0.93848 0.97835 0.83535 0.89093 1.21853 0.96571 1.01037 0.96705 1.21798 0.94116 1.01446 0.99510 1.20626 0.84883 0.97068 0.94447 1.42735 1.01742 1.67173 1.28701 1.19073 0.89923 1.27562 1.00878 0.89242 1.24681 0.96198 1.00553 0.97815 1.69700 1.07321 1.49339 1.31922 0.86540 0.79641 0.80006 0.82288 1.21052 1.21693 1.20396 1.46020 1.66805 1.14219 1.09517 1.17985 0.77723 0.86427 0.82977 1.90792 1.50268 1.15324 1.84980 1.19900 1.04056 0.94396 0.94021 1.20859 0.96866 0.93228 0.98812 1.20319 0.98872 1.00642 0.88865 1.19424 0.99746 0.90074 0.92903 1.66219 1.16761 1.36242 0.98733 1.28273 1.00075 0.92571 1.02468 1.84127 1.64342 1.13905 1.00707 1.23774 1.10263 0.98169 0.99140 1.20415 0.93584 1.00136 0.88635 0.91340 0.92251 0.92386 0.89885 0.91144 0.92131 0.91913 0.95596 0.95721 0.80721 0.93059 0.76307 0.84105 0.83870 0.77653 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.14 1.43 2.57 -67.93 -0.17 1.25 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.28 4.75 -26.73 -0.13 -1.40 16 5 C -0.13 -1.85 5.22 -26.73 -0.14 -1.99 16 6 C 0.16 2.93 6.26 -4.04 -0.03 2.90 16 7 N -0.76 -18.20 5.41 -59.91 -0.32 -18.53 16 8 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 9 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 10 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.65 13.97 55.49 0.78 -28.87 16 12 Si 0.88 22.47 27.74 -169.99 -4.71 17.75 16 13 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 15 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 16 N -0.71 -6.97 4.48 -54.83 -0.25 -7.22 16 17 C 0.56 6.60 7.73 -12.45 -0.10 6.50 16 18 O -0.54 -7.98 16.00 5.29 0.08 -7.90 16 19 C -0.12 -1.20 5.87 -104.99 -0.62 -1.82 16 20 C -0.08 -0.65 9.44 -39.74 -0.38 -1.02 16 21 C -0.07 -0.60 10.03 -39.33 -0.39 -1.00 16 22 C 0.10 1.05 7.00 -84.88 -0.59 0.46 16 23 N -0.47 -4.70 10.56 -12.83 -0.14 -4.84 16 24 C 0.07 0.49 12.11 51.19 0.62 1.11 16 25 S 0.11 0.82 23.17 -107.50 -2.49 -1.67 16 26 C -0.19 -1.94 6.54 -38.62 -0.25 -2.19 16 27 C 0.00 -0.05 9.62 -38.98 -0.37 -0.42 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.36 8.50 5.53 -40.82 -0.23 8.27 16 38 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 39 H 0.40 3.07 6.62 -40.82 -0.27 2.80 16 40 H 0.14 0.83 6.38 -52.49 -0.33 0.50 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.21 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.15 1.47 7.64 -52.49 -0.40 1.06 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -35.94 373.76 -9.72 -45.66 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.85 Total: 5.85 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.45 Total: -5.87 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.07 Total: -59.46 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.75 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.94 -9.72 -45.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283272076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.867 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds