Wall clock time and date at job start Tue Mar 31 2020 16:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29939 * 125.38314 * 2 1 4 4 C 1.36063 * 108.48102 * 179.97438 * 3 2 1 5 5 C 1.47423 * 126.44717 * 180.02562 * 4 3 2 6 6 O 1.21615 * 119.99970 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99952 * 0.02562 * 5 4 3 8 8 C 1.46501 * 119.99558 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46542 * 180.02562 * 8 7 5 10 10 C 1.38221 * 120.01102 * 259.97498 * 9 8 7 11 11 C 1.38220 * 120.02576 * 179.77155 * 10 9 8 12 12 C 1.38277 * 120.04953 * 0.51339 * 11 10 9 13 13 C 1.50700 * 119.98580 * 179.77046 * 12 11 10 14 14 N 1.46498 * 109.46769 * 269.71637 * 13 12 11 15 15 C 1.36943 * 119.99752 * 179.72432 * 14 13 12 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 C 1.38170 * 120.02576 * 359.48562 * 12 11 10 24 24 C 1.38441 * 120.01358 * 80.00531 * 9 8 7 25 25 F 1.35100 * 120.02602 * 359.94703 * 24 9 8 26 26 C 1.36088 * 107.10326 * 0.26403 * 4 3 2 27 27 O 1.34053 * 125.37673 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47394 * 89.99620 * 1 2 3 29 29 H 1.08999 * 109.47453 * 210.00086 * 1 2 3 30 30 H 1.09006 * 109.47251 * 329.99700 * 1 2 3 31 31 H 0.96997 * 119.99861 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47030 * 60.00383 * 8 7 5 33 33 H 1.08998 * 109.47121 * 299.99959 * 8 7 5 34 34 H 1.07997 * 119.98840 * 0.02562 * 10 9 8 35 35 H 1.07998 * 119.98077 * 180.25523 * 11 10 9 36 36 H 1.09004 * 109.47210 * 149.71995 * 13 12 11 37 37 H 1.08994 * 109.47121 * 29.71965 * 13 12 11 38 38 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 39 39 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.01636 * 180.23671 * 23 12 11 41 41 H 1.07999 * 126.52814 * 179.73887 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7439 1.5438 0.0013 6 8 5.8605 1.0618 0.0013 7 7 4.5878 2.8825 0.0020 8 6 5.7632 3.7570 0.0033 9 6 5.3181 5.1967 0.0044 10 6 5.3134 5.9199 -1.1735 11 6 4.9007 7.2390 -1.1736 12 6 4.5021 7.8399 0.0063 13 6 4.0573 9.2798 0.0054 14 7 5.2126 10.1478 0.2464 15 6 5.0516 11.5072 0.2837 16 1 4.0722 11.9392 0.1399 17 6 6.1471 12.3301 0.5064 18 7 7.3408 11.8036 0.6811 19 14 5.9274 14.1843 0.5580 20 1 4.9837 14.5409 1.6477 21 1 7.2403 14.8316 0.8080 22 1 5.3837 14.6547 -0.7414 23 6 4.5059 7.1191 1.1850 24 6 4.9143 5.7957 1.1854 25 9 4.9180 5.0898 2.3373 26 6 3.5660 -0.6971 -0.0051 27 8 2.2830 -1.0930 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 3.6973 3.2669 0.0016 32 1 6.3620 3.5621 -0.8864 33 1 6.3608 3.5611 0.8935 34 1 5.6284 5.4528 -2.0949 35 1 4.8934 7.8021 -2.0951 36 1 3.3180 9.4322 0.7917 37 1 3.6154 9.5229 -0.9608 38 1 6.0923 9.7599 0.3752 39 1 8.1063 12.3785 0.8371 40 1 4.1910 7.5874 2.1057 41 1 4.4360 -1.3368 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285005442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:29 Heat of formation + Delta-G solvation = -24.428571 kcal Electronic energy + Delta-G solvation = -26627.684990 eV Core-core repulsion = 22424.023127 eV Total energy + Delta-G solvation = -4203.661863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -48.79829 -43.84126 -39.88662 -39.01798 -35.64193 -35.32473 -34.36879 -32.70961 -32.11855 -30.52265 -30.21363 -28.37895 -27.30959 -25.04101 -23.74950 -22.79872 -22.44757 -21.88665 -20.82386 -20.72980 -18.66163 -17.49704 -17.34805 -16.94249 -16.59930 -16.53799 -16.29343 -15.49596 -15.33291 -15.15633 -14.75587 -14.58058 -14.32414 -14.00363 -13.79046 -13.65508 -13.48351 -13.36407 -13.21988 -13.02631 -13.01611 -12.27026 -12.06045 -11.82742 -11.66079 -11.41527 -11.24611 -11.08411 -10.82591 -10.68747 -10.53049 -10.14076 -9.81824 -9.50386 -9.24680 -8.94735 -8.79712 -8.50646 -7.00460 -5.80613 -3.11432 0.71301 1.12848 1.34958 1.59614 2.14659 2.88422 3.00739 3.41959 3.44550 3.46500 3.47608 3.74086 4.30888 4.35916 4.39546 4.50816 4.57958 4.78554 4.80084 4.85582 5.01450 5.09782 5.19130 5.19690 5.28229 5.46846 5.49956 5.52301 5.58459 5.68541 5.94475 6.07258 6.09264 6.11298 6.16932 6.36999 6.40515 6.49562 6.91298 6.97431 7.02137 7.30610 7.64406 7.87586 8.36563 9.48254 10.02412 10.38020 11.41576 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.001980 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.845757 B =14134.864727 C =14630.279935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.198 3.802 3 N -0.462 5.462 4 C -0.070 4.070 5 C 0.602 3.398 6 O -0.538 6.538 7 N -0.704 5.704 8 C 0.167 3.833 9 C -0.159 4.159 10 C -0.074 4.074 11 C -0.115 4.115 12 C -0.035 4.035 13 C 0.184 3.816 14 N -0.726 5.726 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.140 4.140 24 C 0.112 3.888 25 F -0.139 7.139 26 C 0.012 3.988 27 O -0.197 6.197 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.411 0.589 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.138 0.862 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 -26.552 -3.173 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.011 4.011 3 N -0.192 5.192 4 C -0.190 4.190 5 C 0.387 3.613 6 O -0.415 6.415 7 N -0.355 5.355 8 C 0.045 3.955 9 C -0.161 4.161 10 C -0.092 4.092 11 C -0.134 4.134 12 C -0.036 4.036 13 C 0.057 3.943 14 N -0.371 5.371 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.159 4.159 24 C 0.093 3.907 25 F -0.117 7.117 26 C -0.061 4.061 27 O -0.084 6.084 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.220 0.780 39 H 0.067 0.933 40 H 0.156 0.844 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.964 -26.117 -3.121 28.896 hybrid contribution 0.250 0.389 0.356 0.583 sum -11.714 -25.728 -2.765 28.404 Atomic orbital electron populations 1.20342 0.80732 1.05534 1.05070 1.26376 0.96724 0.78214 0.99810 1.70786 1.00689 1.29992 1.17773 1.21771 0.92119 0.93059 1.12055 1.16723 0.86197 0.81805 0.76534 1.90838 1.24236 1.75408 1.51050 1.45880 1.10892 1.05091 1.73621 1.20113 0.87254 0.84430 1.03707 1.19688 1.07087 0.96148 0.93140 1.20906 0.97643 0.94138 0.96550 1.21205 0.99088 0.94375 0.98746 1.20254 0.94640 0.96848 0.91862 1.19735 0.91692 0.83926 0.98944 1.42314 1.05271 1.02601 1.86933 1.19180 0.94130 0.82264 1.42054 0.91019 1.24780 0.95398 0.98157 1.02450 1.69665 0.98558 1.34273 1.55342 0.86226 0.76637 0.85186 0.77851 1.21181 1.21646 1.21180 1.21129 1.02641 0.92070 1.00059 1.17531 1.01550 0.90367 0.81276 1.91487 1.94198 1.78457 1.47607 1.25290 0.84840 0.95634 1.00381 1.84402 1.16726 1.37952 1.69278 0.88567 0.89055 0.87722 0.75306 0.89775 0.90077 0.85084 0.84917 0.95048 0.94853 0.77987 0.93332 0.84441 0.75228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.20 1.55 8.30 -13.08 -0.11 1.45 16 3 N -0.46 -4.80 11.06 -7.66 -0.08 -4.89 16 4 C -0.07 -0.77 6.99 -83.02 -0.58 -1.35 16 5 C 0.60 7.60 7.81 -12.52 -0.10 7.50 16 6 O -0.54 -7.98 16.89 5.26 0.09 -7.89 16 7 N -0.70 -8.32 5.55 -62.56 -0.35 -8.67 16 8 C 0.17 2.02 5.52 -5.19 -0.03 1.99 16 9 C -0.16 -2.07 5.25 -104.55 -0.55 -2.62 16 10 C -0.07 -0.92 9.67 -39.59 -0.38 -1.30 16 11 C -0.12 -1.66 9.70 -39.57 -0.38 -2.05 16 12 C -0.04 -0.58 5.25 -104.63 -0.55 -1.13 16 13 C 0.18 3.58 6.38 -5.19 -0.03 3.55 16 14 N -0.73 -18.13 5.59 -61.09 -0.34 -18.47 16 15 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.14 -2.21 9.68 -39.51 -0.38 -2.59 16 24 C 0.11 1.66 7.25 -39.41 -0.29 1.37 16 25 F -0.14 -2.11 16.66 2.25 0.04 -2.07 16 26 C 0.01 0.10 11.95 29.96 0.36 0.46 16 27 O -0.20 -1.58 10.73 6.48 0.07 -1.51 16 28 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.41 4.64 8.19 -40.82 -0.33 4.31 16 32 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 33 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 34 H 0.13 1.30 8.04 -52.49 -0.42 0.88 16 35 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.03 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.39 10.31 7.66 -40.82 -0.31 9.99 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 41 H 0.23 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -33.83 370.92 -7.00 -40.83 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.82 Total: 9.12 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.89 Total: -1.87 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.05 Total: -59.33 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.16 Total: -9.40 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.83 -7.00 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285005442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.398 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds