Wall clock time and date at job start Tue Mar 31 2020 16:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29939 * 125.38314 * 2 1 4 4 C 1.36063 * 108.48102 * 179.97438 * 3 2 1 5 5 C 1.47423 * 126.44717 * 180.02562 * 4 3 2 6 6 O 1.21615 * 119.99970 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99952 * 0.02562 * 5 4 3 8 8 C 1.46501 * 119.99558 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46542 * 180.02562 * 8 7 5 10 10 C 1.38221 * 120.01102 * 259.97498 * 9 8 7 11 11 C 1.38220 * 120.02576 * 179.77155 * 10 9 8 12 12 C 1.38277 * 120.04953 * 0.51339 * 11 10 9 13 13 C 1.50700 * 119.98580 * 179.77046 * 12 11 10 14 14 N 1.46498 * 109.46769 * 269.71637 * 13 12 11 15 15 C 1.36943 * 119.99752 * 179.72432 * 14 13 12 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 C 1.38170 * 120.02576 * 359.48562 * 12 11 10 24 24 C 1.38441 * 120.01358 * 80.00531 * 9 8 7 25 25 F 1.35100 * 120.02602 * 359.94703 * 24 9 8 26 26 C 1.36088 * 107.10326 * 0.26403 * 4 3 2 27 27 O 1.34053 * 125.37673 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47394 * 89.99620 * 1 2 3 29 29 H 1.08999 * 109.47453 * 210.00086 * 1 2 3 30 30 H 1.09006 * 109.47251 * 329.99700 * 1 2 3 31 31 H 0.96997 * 119.99861 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47030 * 60.00383 * 8 7 5 33 33 H 1.08998 * 109.47121 * 299.99959 * 8 7 5 34 34 H 1.07997 * 119.98840 * 0.02562 * 10 9 8 35 35 H 1.07998 * 119.98077 * 180.25523 * 11 10 9 36 36 H 1.09004 * 109.47210 * 149.71995 * 13 12 11 37 37 H 1.08994 * 109.47121 * 29.71965 * 13 12 11 38 38 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 39 39 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.01636 * 180.23671 * 23 12 11 41 41 H 1.07999 * 126.52814 * 179.73887 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7439 1.5438 0.0013 6 8 5.8605 1.0618 0.0013 7 7 4.5878 2.8825 0.0020 8 6 5.7632 3.7570 0.0033 9 6 5.3181 5.1967 0.0044 10 6 5.3134 5.9199 -1.1735 11 6 4.9007 7.2390 -1.1736 12 6 4.5021 7.8399 0.0063 13 6 4.0573 9.2798 0.0054 14 7 5.2126 10.1478 0.2464 15 6 5.0516 11.5072 0.2837 16 1 4.0722 11.9392 0.1399 17 6 6.1471 12.3301 0.5064 18 7 7.3408 11.8036 0.6811 19 14 5.9274 14.1843 0.5580 20 1 4.9837 14.5409 1.6477 21 1 7.2403 14.8316 0.8080 22 1 5.3837 14.6547 -0.7414 23 6 4.5059 7.1191 1.1850 24 6 4.9143 5.7957 1.1854 25 9 4.9180 5.0898 2.3373 26 6 3.5660 -0.6971 -0.0051 27 8 2.2830 -1.0930 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 3.6973 3.2669 0.0016 32 1 6.3620 3.5621 -0.8864 33 1 6.3608 3.5611 0.8935 34 1 5.6284 5.4528 -2.0949 35 1 4.8934 7.8021 -2.0951 36 1 3.3180 9.4322 0.7917 37 1 3.6154 9.5229 -0.9608 38 1 6.0923 9.7599 0.3752 39 1 8.1063 12.3785 0.8371 40 1 4.1910 7.5874 2.1057 41 1 4.4360 -1.3368 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285005442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:26 Heat of formation + Delta-G solvation = -49.332436 kcal Electronic energy + Delta-G solvation = -26628.764902 eV Core-core repulsion = 22424.023127 eV Total energy + Delta-G solvation = -4204.741776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -50.00059 -44.48144 -40.90460 -40.15688 -36.99730 -36.07699 -35.79982 -33.78683 -33.16627 -31.98537 -31.50321 -29.07912 -28.49441 -26.43414 -24.95879 -24.07435 -23.80626 -22.56069 -21.99853 -21.63870 -19.47479 -19.38492 -18.02361 -17.99428 -17.70924 -17.56708 -17.34114 -16.76398 -16.53003 -16.37257 -16.13936 -15.56861 -15.30012 -15.18116 -14.94911 -14.88771 -14.61790 -14.51637 -14.13485 -13.89477 -13.69639 -13.46886 -13.28161 -13.14370 -12.93193 -12.72919 -12.56361 -12.36429 -12.22886 -11.97305 -11.94314 -11.78415 -11.52620 -10.97517 -10.38129 -10.00561 -9.97806 -9.69227 -9.04039 -7.95455 -5.26097 -0.04145 0.01956 0.19430 0.90600 1.48656 1.51763 1.56920 1.57944 1.98543 2.13950 2.50381 2.63556 2.87839 3.14489 3.37979 3.38585 3.66229 3.69239 3.76809 3.88509 4.09667 4.21090 4.30027 4.40549 4.47638 4.49390 4.51413 4.67508 4.72913 4.73088 4.78779 4.84334 4.94589 5.01631 5.12552 5.14032 5.23160 5.27268 5.48653 5.61006 5.84450 6.19061 6.24784 6.51240 6.94014 7.31868 8.03652 8.28245 9.27478 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.001980 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.845757 B =14134.864727 C =14630.279935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.203 3.797 3 N -0.491 5.491 4 C -0.103 4.103 5 C 0.602 3.398 6 O -0.566 6.566 7 N -0.701 5.701 8 C 0.171 3.829 9 C -0.145 4.145 10 C -0.061 4.061 11 C -0.115 4.115 12 C -0.052 4.052 13 C 0.185 3.815 14 N -0.740 5.740 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.977 3.023 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.275 1.275 23 C -0.149 4.149 24 C 0.103 3.897 25 F -0.144 7.144 26 C 0.028 3.972 27 O -0.196 6.196 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.414 0.586 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.131 0.869 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 -27.850 -4.266 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.007 4.007 3 N -0.222 5.222 4 C -0.222 4.222 5 C 0.389 3.611 6 O -0.446 6.446 7 N -0.351 5.351 8 C 0.048 3.952 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.133 4.133 12 C -0.053 4.053 13 C 0.059 3.941 14 N -0.383 5.383 15 C -0.379 4.379 16 H 0.099 0.901 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.806 3.194 20 H -0.204 1.204 21 H -0.223 1.223 22 H -0.201 1.201 23 C -0.168 4.168 24 C 0.083 3.917 25 F -0.123 7.123 26 C -0.046 4.046 27 O -0.082 6.082 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.250 0.750 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.183 0.817 35 H 0.161 0.839 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.149 0.851 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.495 -27.416 -4.222 30.847 hybrid contribution 0.594 0.649 0.690 1.118 sum -12.901 -26.767 -3.532 29.923 Atomic orbital electron populations 1.20624 0.77705 1.06782 1.06533 1.27280 0.98104 0.77551 0.97738 1.70755 1.00720 1.31282 1.19461 1.21669 0.91983 0.93798 1.14747 1.16948 0.86440 0.81968 0.75768 1.90812 1.25388 1.75841 1.52574 1.45823 1.10856 1.05024 1.73372 1.20085 0.87407 0.83741 1.03967 1.19819 1.05613 0.96576 0.92661 1.21209 0.96015 0.93185 0.97522 1.21358 0.98466 0.95217 0.98284 1.20006 0.96780 0.95460 0.93041 1.19801 0.90030 0.85096 0.99135 1.42514 1.06242 1.02556 1.86952 1.19628 0.94371 0.83701 1.40228 0.90131 1.25627 0.95249 1.02678 1.03243 1.69830 0.99225 1.35526 1.57358 0.85163 0.76202 0.79824 0.78252 1.20368 1.22344 1.20081 1.21085 1.03283 0.92697 0.99756 1.17609 1.02180 0.90118 0.81752 1.91473 1.94308 1.78443 1.48040 1.25761 0.85624 0.95128 0.98083 1.84445 1.16587 1.38019 1.69158 0.86834 0.86888 0.87320 0.75002 0.88304 0.91106 0.81697 0.83915 0.94903 0.93802 0.79430 0.93981 0.85133 0.72820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 71.23 0.75 0.50 16 2 C 0.20 2.84 8.30 88.39 0.73 3.57 16 3 N -0.49 -9.77 11.06 -293.04 -3.24 -13.01 16 4 C -0.10 -2.18 6.99 40.41 0.28 -1.90 16 5 C 0.60 14.91 7.81 86.66 0.68 15.59 16 6 O -0.57 -16.59 16.89 -4.08 -0.07 -16.66 16 7 N -0.70 -16.04 5.55 -470.10 -2.61 -18.64 16 8 C 0.17 3.92 5.52 85.63 0.47 4.39 16 9 C -0.15 -3.59 5.25 -19.82 -0.10 -3.69 16 10 C -0.06 -1.38 9.67 22.26 0.22 -1.17 16 11 C -0.11 -3.13 9.70 22.27 0.22 -2.92 16 12 C -0.05 -1.70 5.25 -19.87 -0.10 -1.81 16 13 C 0.19 7.18 6.38 85.63 0.55 7.73 16 14 N -0.74 -37.23 5.59 -347.18 -1.94 -39.17 16 15 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 18 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 19 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C -0.15 -4.75 9.68 22.31 0.22 -4.53 16 24 C 0.10 3.01 7.25 22.38 0.16 3.17 16 25 F -0.14 -4.39 16.66 44.97 0.75 -3.64 16 26 C 0.03 0.44 11.95 67.32 0.80 1.24 16 27 O -0.20 -2.77 10.73 0.26 0.00 -2.77 16 28 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.41 9.07 8.19 -92.71 -0.76 8.31 16 32 H 0.10 2.01 8.00 -2.39 -0.02 1.99 16 33 H 0.07 1.81 7.95 -2.39 -0.02 1.79 16 34 H 0.17 2.65 8.04 -2.91 -0.02 2.63 16 35 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.03 1.27 8.09 -2.38 -0.02 1.25 16 37 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.37 20.37 7.66 -92.71 -0.71 19.66 16 39 H 0.25 14.99 8.31 -92.71 -0.77 14.21 16 40 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.26 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.34 370.92 1.01 -72.33 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.37 Total: 29.42 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.17 Total: 3.52 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -7.51 Total: -129.94 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.43 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.75 Total: -3.64 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.34 1.01 -72.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285005442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.001 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds