Wall clock time and date at job start Tue Mar 31 2020 16:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.28055 * 124.24256 * 2 1 4 4 C 1.34409 * 117.91605 * 179.97438 * 3 2 1 5 5 C 1.41252 * 129.48178 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63384 * 180.02562 * 5 4 3 7 7 C 1.40193 * 120.61473 * 0.02562 * 6 5 4 8 8 C 1.47595 * 120.12186 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99435 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00322 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47217 * 305.00580 * 12 11 10 14 14 C 1.53008 * 109.46816 * 65.00299 * 12 11 10 15 15 C 1.52996 * 109.47336 * 184.99981 * 12 11 10 16 16 N 1.46498 * 109.47059 * 175.00083 * 15 12 11 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 12 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.39177 * 119.74898 * 0.23011 * 7 6 5 26 26 C 1.38905 * 119.84775 * 359.51630 * 25 7 6 27 27 S 1.70648 * 124.23988 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47117 * 90.02848 * 1 2 3 29 29 H 1.09000 * 109.46826 * 210.02548 * 1 2 3 30 30 H 1.08994 * 109.46768 * 330.02557 * 1 2 3 31 31 H 1.07999 * 119.68136 * 0.02562 * 5 4 3 32 32 H 1.08003 * 119.69102 * 179.97438 * 6 5 4 33 33 H 0.97004 * 119.99945 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47000 * 60.00500 * 11 10 8 35 35 H 1.08996 * 109.47381 * 300.00104 * 11 10 8 36 36 H 1.09001 * 109.46930 * 299.99894 * 14 12 11 37 37 H 1.09000 * 109.46973 * 59.99593 * 14 12 11 38 38 H 1.08995 * 109.47053 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.47066 * 55.00351 * 15 12 11 40 40 H 1.08994 * 109.46974 * 295.00498 * 15 12 11 41 41 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 42 42 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.07505 * 179.72760 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8951 0.0002 6 6 5.8865 1.5398 0.0003 7 6 6.2597 0.1884 0.0003 8 6 7.6875 -0.1857 -0.0001 9 8 8.0086 -1.3584 0.0003 10 7 8.6352 0.7726 -0.0010 11 6 10.0524 0.4012 -0.0008 12 6 10.9114 1.6673 -0.0026 13 1 10.6274 2.2979 -0.8451 14 6 10.6935 2.4332 1.3040 15 6 12.3868 1.2825 -0.1281 16 7 13.1992 2.4954 -0.2499 17 6 14.5600 2.3990 -0.3695 18 1 15.0338 1.4285 -0.3785 19 6 15.3304 3.5485 -0.4790 20 7 14.7529 4.7312 -0.4674 21 14 17.1865 3.4169 -0.6429 22 1 17.5219 2.6425 -1.8648 23 1 17.7724 4.7778 -0.7424 24 1 17.7408 2.7258 0.5489 25 6 5.2789 -0.7990 -0.0047 26 6 3.9369 -0.4403 0.0005 27 16 2.4672 -1.4107 0.0006 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3057 2.9406 -0.0002 32 1 6.6484 2.3052 -0.0004 33 1 8.3790 1.7081 -0.0010 34 1 10.2735 -0.1886 -0.8905 35 1 10.2737 -0.1872 0.8895 36 1 9.6424 2.7074 1.3934 37 1 10.9775 1.8025 2.1464 38 1 11.3051 3.3354 1.3026 39 1 12.5263 0.6614 -1.0131 40 1 12.6940 0.7268 0.7578 41 1 12.7737 3.3671 -0.2414 42 1 15.2912 5.5345 -0.5444 43 1 5.5605 -1.8416 -0.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319264089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:15 Heat of formation + Delta-G solvation = 22.251074 kcal Electronic energy + Delta-G solvation = -24386.787443 eV Core-core repulsion = 20751.362937 eV Total energy + Delta-G solvation = -3635.424506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.03252 -39.77647 -37.35314 -36.73328 -34.48053 -32.74898 -32.01812 -31.60524 -30.13033 -28.96423 -26.53987 -25.42729 -24.69847 -23.43018 -22.30464 -21.77492 -20.61629 -20.02610 -19.05713 -17.91321 -16.98184 -16.57714 -16.27879 -15.73744 -15.56784 -15.41409 -14.80117 -14.40591 -14.36444 -14.29193 -13.84447 -13.65933 -13.57785 -13.55636 -13.12002 -12.87124 -12.73473 -12.66994 -12.36081 -12.07945 -11.81340 -11.34843 -11.07840 -10.91851 -10.72461 -10.65707 -10.60169 -10.46299 -10.20839 -10.13269 -9.99863 -9.68121 -9.23234 -9.01365 -8.87844 -8.59375 -6.93141 -5.77644 -3.06102 -0.31052 0.68651 0.71140 1.20458 1.54956 2.68931 2.99964 3.33284 3.41690 3.44420 3.48715 3.49722 4.09987 4.37919 4.40935 4.58436 4.62640 4.67880 4.81076 4.86949 4.95328 5.07266 5.18447 5.30531 5.33544 5.36023 5.57035 5.58951 5.67276 5.76780 5.77983 5.93336 5.95252 6.07781 6.09329 6.20775 6.35788 6.41547 6.63264 6.75288 6.84630 7.10438 7.35549 7.69559 8.03573 8.41522 9.52770 10.09836 10.44605 11.45232 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.001714 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.724408 B =16334.156667 C =16898.934021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 N -0.473 5.473 4 C 0.106 3.894 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.117 4.117 8 C 0.558 3.442 9 O -0.536 6.536 10 N -0.716 5.716 11 C 0.126 3.874 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.160 3.840 16 N -0.730 5.730 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.004 4.004 26 C -0.197 4.197 27 S 0.114 5.886 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.258 -9.268 1.818 32.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.189 4.189 3 N -0.187 5.187 4 C -0.016 4.016 5 C -0.090 4.090 6 C -0.097 4.097 7 C -0.124 4.124 8 C 0.344 3.656 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.003 3.997 12 C -0.130 4.130 13 H 0.096 0.904 14 C -0.200 4.200 15 C 0.032 3.968 16 N -0.375 5.375 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.027 4.027 26 C -0.316 4.316 27 S 0.370 5.630 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -31.403 -10.724 1.805 33.233 hybrid contribution 1.440 1.493 -0.108 2.078 sum -29.963 -9.231 1.697 31.398 Atomic orbital electron populations 1.20610 0.84562 1.04791 1.04520 1.26891 1.02020 0.90951 0.99018 1.66163 1.04097 1.31317 1.17126 1.19333 0.89184 0.91694 1.01356 1.20291 0.90112 0.98834 0.99802 1.20860 0.96201 0.95214 0.97427 1.19903 0.93394 0.93646 1.05448 1.17985 0.84962 0.85696 0.76948 1.90801 1.82795 1.18001 1.49860 1.45971 1.06889 1.09530 1.74389 1.21487 0.78018 0.97540 1.02700 1.21568 0.96763 0.95474 0.99227 0.90439 1.21805 1.00135 1.01407 0.96627 1.20572 0.87262 0.90879 0.98061 1.42322 1.03657 1.02861 1.88663 1.19201 0.83066 0.92712 1.42176 0.91191 1.24731 0.98029 0.95243 1.02951 1.69647 1.34482 0.96666 1.57520 0.86252 0.85453 0.76457 0.77929 1.21262 1.21699 1.21270 1.20418 0.88116 1.00556 0.93617 1.23747 0.98845 0.96816 1.12165 1.84040 0.95214 1.10098 1.73600 0.88896 0.89521 0.88761 0.83966 0.84128 0.76354 0.91024 0.91020 0.93955 0.92727 0.91055 0.96078 0.95960 0.78206 0.93486 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.44 36.01 0.38 0.06 16 2 C 0.09 0.74 7.29 -13.85 -0.10 0.64 16 3 N -0.47 -4.85 10.56 -8.96 -0.09 -4.94 16 4 C 0.11 1.11 7.00 -84.88 -0.59 0.52 16 5 C -0.07 -0.62 10.03 -39.33 -0.39 -1.01 16 6 C -0.08 -0.64 9.44 -39.74 -0.38 -1.01 16 7 C -0.12 -1.24 5.87 -105.00 -0.62 -1.86 16 8 C 0.56 7.10 7.76 -12.45 -0.10 7.00 16 9 O -0.54 -8.68 16.34 5.29 0.09 -8.59 16 10 N -0.72 -8.12 5.24 -61.33 -0.32 -8.44 16 11 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 12 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.14 -2.02 8.94 37.16 0.33 -1.69 16 15 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 16 N -0.73 -18.07 5.33 -59.91 -0.32 -18.39 16 17 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 21 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 C 0.00 -0.04 9.62 -38.99 -0.37 -0.42 16 26 C -0.20 -2.01 6.54 -38.62 -0.25 -2.26 16 27 S 0.11 0.88 23.11 -107.50 -2.48 -1.61 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.14 0.83 6.38 -52.48 -0.33 0.49 16 33 H 0.40 3.56 5.67 -40.82 -0.23 3.33 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.15 1.51 7.64 -52.49 -0.40 1.11 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -34.12 374.47 -10.16 -44.29 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.77 Total: 6.41 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.61 Total: -4.49 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.01 Total: -58.99 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.48 Total: -1.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.12 -10.16 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319264089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.536 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds