Wall clock time and date at job start Tue Mar 31 2020 16:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.28055 * 124.24256 * 2 1 4 4 C 1.34409 * 117.91605 * 179.97438 * 3 2 1 5 5 C 1.41252 * 129.48178 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63384 * 180.02562 * 5 4 3 7 7 C 1.40193 * 120.61473 * 0.02562 * 6 5 4 8 8 C 1.47595 * 120.12186 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99435 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00322 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47217 * 305.00580 * 12 11 10 14 14 C 1.53008 * 109.46816 * 65.00299 * 12 11 10 15 15 C 1.52996 * 109.47336 * 184.99981 * 12 11 10 16 16 N 1.46498 * 109.47059 * 175.00083 * 15 12 11 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 12 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.39177 * 119.74898 * 0.23011 * 7 6 5 26 26 C 1.38905 * 119.84775 * 359.51630 * 25 7 6 27 27 S 1.70648 * 124.23988 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47117 * 90.02848 * 1 2 3 29 29 H 1.09000 * 109.46826 * 210.02548 * 1 2 3 30 30 H 1.08994 * 109.46768 * 330.02557 * 1 2 3 31 31 H 1.07999 * 119.68136 * 0.02562 * 5 4 3 32 32 H 1.08003 * 119.69102 * 179.97438 * 6 5 4 33 33 H 0.97004 * 119.99945 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47000 * 60.00500 * 11 10 8 35 35 H 1.08996 * 109.47381 * 300.00104 * 11 10 8 36 36 H 1.09001 * 109.46930 * 299.99894 * 14 12 11 37 37 H 1.09000 * 109.46973 * 59.99593 * 14 12 11 38 38 H 1.08995 * 109.47053 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.47066 * 55.00351 * 15 12 11 40 40 H 1.08994 * 109.46974 * 295.00498 * 15 12 11 41 41 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 42 42 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.07505 * 179.72760 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8951 0.0002 6 6 5.8865 1.5398 0.0003 7 6 6.2597 0.1884 0.0003 8 6 7.6875 -0.1857 -0.0001 9 8 8.0086 -1.3584 0.0003 10 7 8.6352 0.7726 -0.0010 11 6 10.0524 0.4012 -0.0008 12 6 10.9114 1.6673 -0.0026 13 1 10.6274 2.2979 -0.8451 14 6 10.6935 2.4332 1.3040 15 6 12.3868 1.2825 -0.1281 16 7 13.1992 2.4954 -0.2499 17 6 14.5600 2.3990 -0.3695 18 1 15.0338 1.4285 -0.3785 19 6 15.3304 3.5485 -0.4790 20 7 14.7529 4.7312 -0.4674 21 14 17.1865 3.4169 -0.6429 22 1 17.5219 2.6425 -1.8648 23 1 17.7724 4.7778 -0.7424 24 1 17.7408 2.7258 0.5489 25 6 5.2789 -0.7990 -0.0047 26 6 3.9369 -0.4403 0.0005 27 16 2.4672 -1.4107 0.0006 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3057 2.9406 -0.0002 32 1 6.6484 2.3052 -0.0004 33 1 8.3790 1.7081 -0.0010 34 1 10.2735 -0.1886 -0.8905 35 1 10.2737 -0.1872 0.8895 36 1 9.6424 2.7074 1.3934 37 1 10.9775 1.8025 2.1464 38 1 11.3051 3.3354 1.3026 39 1 12.5263 0.6614 -1.0131 40 1 12.6940 0.7268 0.7578 41 1 12.7737 3.3671 -0.2414 42 1 15.2912 5.5345 -0.5444 43 1 5.5605 -1.8416 -0.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319264089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:12 Heat of formation + Delta-G solvation = -0.296229 kcal Electronic energy + Delta-G solvation = -24387.765167 eV Core-core repulsion = 20751.362937 eV Total energy + Delta-G solvation = -3636.402230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.78412 -40.70293 -38.38912 -37.78613 -36.02647 -34.22940 -32.76870 -32.33156 -31.82111 -29.68605 -27.72678 -27.02448 -25.40486 -24.69458 -23.66222 -22.48649 -21.56803 -21.22480 -19.86049 -19.20696 -18.51856 -17.54155 -17.01021 -16.70415 -16.59728 -16.29170 -16.22059 -15.66590 -15.48389 -15.34975 -15.07964 -14.77162 -14.37324 -14.25615 -14.21766 -13.99987 -13.65573 -13.55236 -13.53899 -13.12067 -12.95052 -12.76935 -12.47546 -12.21027 -12.17669 -12.00962 -11.98465 -11.72235 -11.64363 -11.32546 -11.18163 -10.92110 -10.77890 -10.23063 -9.74959 -9.26975 -8.97713 -7.94329 -5.22300 -1.01168 -0.01274 0.08662 0.56560 0.82011 1.48604 1.51110 1.57196 1.84208 2.01924 2.57683 2.62629 2.78297 3.39361 3.43180 3.54861 3.70773 3.85590 3.96730 3.97761 4.03256 4.08796 4.25132 4.36713 4.55615 4.57035 4.64540 4.67802 4.71789 4.77311 4.87521 4.95083 4.98290 5.05585 5.06130 5.13249 5.14600 5.27776 5.38957 5.45096 5.49612 5.51323 6.28305 6.43321 6.46319 7.08155 7.35433 8.10982 8.35222 9.28751 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.001714 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.724408 B =16334.156667 C =16898.934021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.100 3.900 3 N -0.503 5.503 4 C 0.094 3.906 5 C -0.075 4.075 6 C -0.065 4.065 7 C -0.130 4.130 8 C 0.560 3.440 9 O -0.577 6.577 10 N -0.704 5.704 11 C 0.137 3.863 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.137 4.137 15 C 0.156 3.844 16 N -0.741 5.741 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.972 3.028 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.279 1.279 25 C -0.010 4.010 26 C -0.222 4.222 27 S 0.138 5.862 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.415 0.585 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.914 -9.324 1.895 34.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.183 4.183 3 N -0.218 5.218 4 C -0.028 4.028 5 C -0.095 4.095 6 C -0.086 4.086 7 C -0.137 4.137 8 C 0.348 3.652 9 O -0.458 6.458 10 N -0.356 5.356 11 C 0.013 3.987 12 C -0.114 4.114 13 H 0.100 0.900 14 C -0.195 4.195 15 C 0.029 3.971 16 N -0.384 5.384 17 C -0.381 4.381 18 H 0.091 0.909 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.205 1.205 25 C -0.033 4.033 26 C -0.340 4.340 27 S 0.395 5.605 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.253 0.747 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -33.083 -10.799 1.886 34.852 hybrid contribution 1.803 1.424 -0.130 2.301 sum -31.280 -9.375 1.757 32.702 Atomic orbital electron populations 1.20849 0.81766 1.06107 1.05913 1.27640 1.03597 0.90446 0.96640 1.66253 1.04074 1.32357 1.19118 1.19722 0.89874 0.92181 1.01027 1.20567 0.89914 0.99593 0.99470 1.21075 0.96812 0.94682 0.96071 1.19768 0.91934 0.94774 1.07226 1.18259 0.85838 0.85125 0.75938 1.90780 1.83485 1.19683 1.51874 1.45776 1.05828 1.10208 1.73800 1.21213 0.78836 0.96358 1.02286 1.21344 0.93909 0.96219 0.99896 0.90025 1.21752 1.01895 0.99888 0.95950 1.20728 0.89637 0.89063 0.97689 1.42484 1.03254 1.04138 1.88521 1.19604 0.84713 0.92847 1.40946 0.90891 1.25519 1.02318 0.95043 1.03612 1.69793 1.35764 0.97096 1.59063 0.85236 0.80367 0.76168 0.78125 1.20533 1.22036 1.20531 1.20428 0.88647 1.00398 0.93869 1.23928 0.99407 0.97649 1.13036 1.83920 0.93884 1.09600 1.73067 0.87261 0.87302 0.88290 0.82064 0.81402 0.74673 0.91700 0.91388 0.90397 0.92971 0.93788 0.96192 0.96081 0.79034 0.93983 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.44 71.24 0.74 0.31 16 2 C 0.10 1.39 7.29 88.66 0.65 2.03 16 3 N -0.50 -9.71 10.56 -182.19 -1.92 -11.63 16 4 C 0.09 1.88 7.00 39.95 0.28 2.16 16 5 C -0.07 -1.21 10.03 22.43 0.23 -0.98 16 6 C -0.06 -0.98 9.44 22.17 0.21 -0.77 16 7 C -0.13 -2.67 5.87 -20.11 -0.12 -2.79 16 8 C 0.56 13.89 7.76 86.71 0.67 14.56 16 9 O -0.58 -18.82 16.34 -4.00 -0.07 -18.89 16 10 N -0.70 -14.81 5.24 -466.20 -2.44 -17.25 16 11 C 0.14 3.50 5.06 86.38 0.44 3.93 16 12 C -0.09 -2.71 2.46 -10.79 -0.03 -2.73 16 13 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 14 C -0.14 -3.72 8.94 71.98 0.64 -3.08 16 15 C 0.16 6.03 5.65 86.38 0.49 6.52 16 16 N -0.74 -36.81 5.33 -343.46 -1.83 -38.64 16 17 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 21 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 C -0.01 -0.22 9.62 22.66 0.22 0.00 16 26 C -0.22 -4.41 6.54 22.89 0.15 -4.26 16 27 S 0.14 1.98 23.11 -56.49 -1.31 0.68 16 28 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.17 1.45 6.38 -2.91 -0.02 1.44 16 33 H 0.41 6.26 5.67 -92.71 -0.53 5.74 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.53 7.18 -2.39 -0.02 1.52 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 39 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.38 19.57 6.85 -92.71 -0.63 18.94 16 42 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.14 3.02 7.64 -2.91 -0.02 3.00 16 Total: -1.00 -74.09 374.47 0.51 -73.57 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.11 Total: 23.99 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.88 Total: -1.82 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -5.91 Total: -125.56 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.07 Total: -18.89 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.31 Total: 0.68 kcal Total: -74.09 0.51 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319264089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.278 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds