Wall clock time and date at job start Tue Mar 31 2020 16:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28062 * 124.23651 * 2 1 4 4 C 1.34417 * 117.91165 * 179.97438 * 3 2 1 5 5 C 1.41243 * 129.48223 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63491 * 179.97438 * 5 4 3 7 7 C 1.40188 * 120.61519 * 0.27723 * 6 5 4 8 8 C 1.47593 * 120.12888 * 179.72188 * 7 6 5 9 9 O 1.21583 * 120.00751 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99463 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99926 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47249 * 180.02562 * 11 10 8 13 13 H 1.08992 * 109.47166 * 54.99710 * 12 11 10 14 14 C 1.53010 * 109.46860 * 295.00097 * 12 11 10 15 15 C 1.52997 * 109.47281 * 175.00317 * 12 11 10 16 16 N 1.46491 * 109.47237 * 184.99701 * 15 12 11 17 17 C 1.36934 * 120.00399 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00754 * 180.02562 * 17 16 15 20 20 N 1.31607 * 120.00392 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99273 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47064 * 90.00065 * 21 19 17 23 23 H 1.48504 * 109.46546 * 209.99872 * 21 19 17 24 24 H 1.48496 * 109.47200 * 329.99683 * 21 19 17 25 25 C 1.39180 * 119.74807 * 359.47691 * 7 6 5 26 26 C 1.38912 * 119.84932 * 0.48448 * 25 7 6 27 27 S 1.70642 * 124.24079 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47042 * 90.03357 * 1 2 3 29 29 H 1.09004 * 109.47057 * 210.02304 * 1 2 3 30 30 H 1.08995 * 109.47321 * 330.02915 * 1 2 3 31 31 H 1.08003 * 119.68329 * 359.93313 * 5 4 3 32 32 H 1.08002 * 119.68863 * 179.97438 * 6 5 4 33 33 H 0.96995 * 120.00056 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.46764 * 300.00361 * 11 10 8 35 35 H 1.08997 * 109.46762 * 60.00062 * 11 10 8 36 36 H 1.08992 * 109.46915 * 299.99767 * 14 12 11 37 37 H 1.08998 * 109.46861 * 59.99840 * 14 12 11 38 38 H 1.08996 * 109.46743 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46376 * 304.99798 * 15 12 11 40 40 H 1.09000 * 109.46925 * 64.99582 * 15 12 11 41 41 H 0.97005 * 120.00437 * 0.02562 * 16 15 12 42 42 H 0.97007 * 120.00612 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.07965 * 180.27218 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5635 0.9106 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8864 1.5399 0.0021 7 6 6.2597 0.1887 -0.0032 8 6 7.6874 -0.1855 -0.0083 9 8 8.0087 -1.3581 -0.0125 10 7 8.6351 0.7729 -0.0082 11 6 10.0523 0.4016 -0.0127 12 6 10.9113 1.6677 -0.0110 13 1 10.6294 2.2968 0.8332 14 6 10.6899 2.4358 -1.3157 15 6 12.3871 1.2827 0.1100 16 7 13.1997 2.4954 0.2317 17 6 14.5602 2.3986 0.3537 18 1 15.0341 1.4282 0.3599 19 6 15.3303 3.5478 0.4695 20 7 16.6379 3.4547 0.5863 21 14 14.5105 5.2263 0.4596 22 1 14.1649 5.6166 1.8500 23 1 15.4413 6.2282 -0.1191 24 1 13.2736 5.1682 -0.3602 25 6 5.2789 -0.7988 0.0013 26 6 3.9368 -0.4403 0.0010 27 16 2.4672 -1.4107 0.0006 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.3056 2.9408 0.0001 32 1 6.6482 2.3055 0.0022 33 1 8.3789 1.7083 -0.0045 34 1 10.2757 -0.1898 0.8753 35 1 10.2713 -0.1853 -0.9047 36 1 10.9718 1.8067 -2.1599 37 1 9.6385 2.7101 -1.4019 38 1 11.3015 3.3380 -1.3142 39 1 12.5287 0.6601 0.9935 40 1 12.6919 0.7285 -0.7777 41 1 12.7741 3.3671 0.2265 42 1 17.1760 4.2577 0.6676 43 1 5.5605 -1.8415 0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319264090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:21 Heat of formation + Delta-G solvation = 26.580966 kcal Electronic energy + Delta-G solvation = -24470.587458 eV Core-core repulsion = 20835.350711 eV Total energy + Delta-G solvation = -3635.236747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.08130 -39.83966 -37.43957 -36.85971 -34.62525 -32.78875 -32.06387 -31.65739 -30.58554 -29.05517 -26.70716 -25.67943 -24.74943 -23.40088 -22.02947 -21.78806 -20.69029 -20.20397 -19.13860 -18.06321 -17.36697 -16.64225 -16.34483 -15.79442 -15.61306 -15.48278 -14.85647 -14.48881 -14.44581 -14.29797 -13.97303 -13.74133 -13.64582 -13.56533 -13.29118 -12.91619 -12.78030 -12.68510 -12.49728 -12.25106 -11.87108 -11.47894 -11.39174 -11.07659 -10.79332 -10.70176 -10.66744 -10.65364 -10.23262 -10.17274 -10.08431 -9.59852 -9.29608 -9.07198 -8.92072 -8.63940 -7.25278 -5.78206 -3.14021 -0.35605 0.63621 0.67164 1.16550 1.50251 2.63632 2.92482 3.29156 3.33957 3.36310 3.36556 3.42981 4.05361 4.32269 4.35565 4.56686 4.56881 4.63093 4.77037 4.81072 4.83836 4.98510 5.04775 5.19066 5.27139 5.29333 5.52192 5.53170 5.61836 5.62963 5.70021 5.71798 5.82903 5.84867 6.02461 6.05147 6.18983 6.30639 6.42458 6.62717 6.71812 7.06224 7.27694 7.96853 7.98206 8.40515 9.19443 9.91460 10.10990 11.40192 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.001851 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.776007 B =15126.893828 C =15872.242954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 N -0.473 5.473 4 C 0.106 3.894 5 C -0.070 4.070 6 C -0.076 4.076 7 C -0.118 4.118 8 C 0.558 3.442 9 O -0.534 6.534 10 N -0.718 5.718 11 C 0.126 3.874 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.145 4.145 15 C 0.165 3.835 16 N -0.754 5.754 17 C -0.245 4.245 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.003 4.003 26 C -0.198 4.198 27 S 0.116 5.884 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.719 -6.700 -2.121 36.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.189 4.189 3 N -0.187 5.187 4 C -0.015 4.015 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.125 4.125 8 C 0.345 3.655 9 O -0.412 6.412 10 N -0.370 5.370 11 C 0.003 3.997 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.202 4.202 15 C 0.037 3.963 16 N -0.400 5.400 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.026 4.026 26 C -0.316 4.316 27 S 0.373 5.627 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -35.799 -8.205 -2.112 36.788 hybrid contribution 0.104 2.506 0.009 2.509 sum -35.696 -5.698 -2.103 36.209 Atomic orbital electron populations 1.20614 0.84539 1.04818 1.04535 1.26900 1.02044 0.90967 0.98941 1.66175 1.04075 1.31315 1.17176 1.19335 0.89203 0.91689 1.01309 1.20282 0.90120 0.98821 0.99845 1.20839 0.96170 0.95186 0.97547 1.19889 0.93369 0.93640 1.05576 1.17982 0.84955 0.85680 0.76920 1.90807 1.82762 1.17980 1.49684 1.45962 1.06870 1.09504 1.74615 1.21462 0.77974 0.97287 1.02981 1.21620 0.96963 0.95794 0.99082 0.90497 1.21831 1.00220 1.01147 0.97002 1.20549 0.86659 0.90147 0.98940 1.42673 1.04486 1.02496 1.90336 1.19068 0.80965 0.95076 1.42367 0.89160 1.24673 0.95213 0.97269 1.01997 1.69696 1.03544 1.27977 1.56925 0.86548 0.78567 0.85604 0.77759 1.21096 1.21719 1.20400 1.20427 0.88116 1.00573 0.93500 1.23758 0.98872 0.96835 1.12153 1.84055 0.95150 1.10036 1.73499 0.88881 0.89495 0.88748 0.84002 0.84226 0.76437 0.90809 0.90817 0.92277 0.93699 0.91691 0.95162 0.95096 0.80641 0.93046 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 36.01 0.38 0.08 16 2 C 0.10 0.71 7.29 -13.85 -0.10 0.61 16 3 N -0.47 -4.69 10.56 -8.96 -0.09 -4.78 16 4 C 0.11 1.08 7.00 -84.87 -0.59 0.48 16 5 C -0.07 -0.59 10.03 -39.33 -0.39 -0.98 16 6 C -0.08 -0.60 9.44 -39.74 -0.38 -0.97 16 7 C -0.12 -1.19 5.87 -105.00 -0.62 -1.81 16 8 C 0.56 6.77 7.76 -12.44 -0.10 6.68 16 9 O -0.53 -8.37 16.34 5.29 0.09 -8.28 16 10 N -0.72 -7.58 5.23 -61.33 -0.32 -7.90 16 11 C 0.13 1.57 5.06 -4.04 -0.02 1.55 16 12 C -0.12 -1.58 2.46 -90.62 -0.22 -1.80 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.14 -1.87 8.94 37.16 0.33 -1.54 16 15 C 0.16 3.03 5.65 -4.05 -0.02 3.01 16 16 N -0.75 -17.41 5.13 -59.91 -0.31 -17.72 16 17 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 21 Si 0.88 21.78 27.74 -169.99 -4.71 17.06 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 25 C 0.00 -0.03 9.62 -38.98 -0.37 -0.41 16 26 C -0.20 -1.94 6.54 -38.61 -0.25 -2.19 16 27 S 0.12 0.86 23.11 -107.50 -2.48 -1.63 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.14 0.73 6.38 -52.49 -0.33 0.40 16 33 H 0.40 3.20 5.67 -40.82 -0.23 2.97 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.45 7.18 -51.93 -0.37 0.08 16 38 H 0.06 0.98 7.18 -51.93 -0.37 0.60 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.03 4.71 -40.82 -0.19 7.84 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 43 H 0.15 1.46 7.64 -52.49 -0.40 1.06 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -35.15 371.36 -9.81 -44.95 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.72 Total: 5.50 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.62 Total: -4.32 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.05 Total: -58.89 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.48 Total: -1.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.15 -9.81 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319264090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.535 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds