Wall clock time and date at job start Tue Mar 31 2020 16:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28062 * 124.23651 * 2 1 4 4 C 1.34417 * 117.91165 * 179.97438 * 3 2 1 5 5 C 1.41243 * 129.48223 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63491 * 179.97438 * 5 4 3 7 7 C 1.40188 * 120.61519 * 0.27723 * 6 5 4 8 8 C 1.47593 * 120.12888 * 179.72188 * 7 6 5 9 9 O 1.21583 * 120.00751 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99463 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99926 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47249 * 180.02562 * 11 10 8 13 13 H 1.08992 * 109.47166 * 54.99710 * 12 11 10 14 14 C 1.53010 * 109.46860 * 295.00097 * 12 11 10 15 15 C 1.52997 * 109.47281 * 175.00317 * 12 11 10 16 16 N 1.46491 * 109.47237 * 184.99701 * 15 12 11 17 17 C 1.36934 * 120.00399 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00754 * 180.02562 * 17 16 15 20 20 N 1.31607 * 120.00392 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99273 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47064 * 90.00065 * 21 19 17 23 23 H 1.48504 * 109.46546 * 209.99872 * 21 19 17 24 24 H 1.48496 * 109.47200 * 329.99683 * 21 19 17 25 25 C 1.39180 * 119.74807 * 359.47691 * 7 6 5 26 26 C 1.38912 * 119.84932 * 0.48448 * 25 7 6 27 27 S 1.70642 * 124.24079 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47042 * 90.03357 * 1 2 3 29 29 H 1.09004 * 109.47057 * 210.02304 * 1 2 3 30 30 H 1.08995 * 109.47321 * 330.02915 * 1 2 3 31 31 H 1.08003 * 119.68329 * 359.93313 * 5 4 3 32 32 H 1.08002 * 119.68863 * 179.97438 * 6 5 4 33 33 H 0.96995 * 120.00056 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.46764 * 300.00361 * 11 10 8 35 35 H 1.08997 * 109.46762 * 60.00062 * 11 10 8 36 36 H 1.08992 * 109.46915 * 299.99767 * 14 12 11 37 37 H 1.08998 * 109.46861 * 59.99840 * 14 12 11 38 38 H 1.08996 * 109.46743 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46376 * 304.99798 * 15 12 11 40 40 H 1.09000 * 109.46925 * 64.99582 * 15 12 11 41 41 H 0.97005 * 120.00437 * 0.02562 * 16 15 12 42 42 H 0.97007 * 120.00612 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.07965 * 180.27218 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5635 0.9106 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8864 1.5399 0.0021 7 6 6.2597 0.1887 -0.0032 8 6 7.6874 -0.1855 -0.0083 9 8 8.0087 -1.3581 -0.0125 10 7 8.6351 0.7729 -0.0082 11 6 10.0523 0.4016 -0.0127 12 6 10.9113 1.6677 -0.0110 13 1 10.6294 2.2968 0.8332 14 6 10.6899 2.4358 -1.3157 15 6 12.3871 1.2827 0.1100 16 7 13.1997 2.4954 0.2317 17 6 14.5602 2.3986 0.3537 18 1 15.0341 1.4282 0.3599 19 6 15.3303 3.5478 0.4695 20 7 16.6379 3.4547 0.5863 21 14 14.5105 5.2263 0.4596 22 1 14.1649 5.6166 1.8500 23 1 15.4413 6.2282 -0.1191 24 1 13.2736 5.1682 -0.3602 25 6 5.2789 -0.7988 0.0013 26 6 3.9368 -0.4403 0.0010 27 16 2.4672 -1.4107 0.0006 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.3056 2.9408 0.0001 32 1 6.6482 2.3055 0.0022 33 1 8.3789 1.7083 -0.0045 34 1 10.2757 -0.1898 0.8753 35 1 10.2713 -0.1853 -0.9047 36 1 10.9718 1.8067 -2.1599 37 1 9.6385 2.7101 -1.4019 38 1 11.3015 3.3380 -1.3142 39 1 12.5287 0.6601 0.9935 40 1 12.6919 0.7285 -0.7777 41 1 12.7741 3.3671 0.2265 42 1 17.1760 4.2577 0.6676 43 1 5.5605 -1.8415 0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319264090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:19 Heat of formation + Delta-G solvation = 2.364562 kcal Electronic energy + Delta-G solvation = -24471.637560 eV Core-core repulsion = 20835.350711 eV Total energy + Delta-G solvation = -3636.286849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.78707 -40.70995 -38.47237 -37.81030 -36.11308 -34.27265 -32.89236 -32.36211 -32.17515 -29.71005 -27.84972 -27.12199 -25.39512 -24.48144 -23.53335 -22.49145 -21.62437 -21.34205 -19.98310 -19.51567 -18.58405 -17.54684 -17.02374 -16.69667 -16.55716 -16.36361 -16.22835 -15.80289 -15.53036 -15.25641 -15.07002 -14.88512 -14.39091 -14.27736 -14.22800 -14.03937 -13.82585 -13.63668 -13.55850 -13.19606 -13.12537 -12.86916 -12.47956 -12.17832 -12.12085 -12.02561 -11.98681 -11.74584 -11.68562 -11.32807 -11.19465 -10.97359 -10.78453 -10.23614 -9.75284 -9.29004 -9.27436 -8.01768 -5.35842 -1.01472 -0.01487 0.08304 0.56353 0.81603 1.38275 1.43606 1.50845 1.83983 2.00802 2.49883 2.62446 2.77998 3.29559 3.42871 3.51646 3.56872 3.84399 3.94857 3.96417 4.00464 4.04108 4.12704 4.27020 4.53173 4.56376 4.63883 4.67444 4.69839 4.77202 4.87165 4.93746 4.98054 5.03392 5.05088 5.11343 5.12836 5.25363 5.33904 5.44361 5.47739 5.76538 6.21591 6.43142 6.45748 7.08547 7.09168 7.84071 8.04903 9.19800 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.001851 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.776007 B =15126.893828 C =15872.242954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.100 3.900 3 N -0.502 5.502 4 C 0.093 3.907 5 C -0.075 4.075 6 C -0.064 4.064 7 C -0.130 4.130 8 C 0.560 3.440 9 O -0.577 6.577 10 N -0.703 5.703 11 C 0.135 3.865 12 C -0.098 4.098 13 H 0.091 0.909 14 C -0.144 4.144 15 C 0.158 3.842 16 N -0.753 5.753 17 C -0.239 4.239 18 H 0.052 0.948 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.244 1.244 25 C -0.011 4.011 26 C -0.222 4.222 27 S 0.137 5.863 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.415 0.585 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.369 0.631 42 H 0.258 0.742 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.309 -4.886 -2.370 39.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.183 4.183 3 N -0.217 5.217 4 C -0.029 4.029 5 C -0.095 4.095 6 C -0.085 4.085 7 C -0.137 4.137 8 C 0.348 3.652 9 O -0.458 6.458 10 N -0.356 5.356 11 C 0.011 3.989 12 C -0.118 4.118 13 H 0.109 0.891 14 C -0.201 4.201 15 C 0.031 3.969 16 N -0.399 5.399 17 C -0.370 4.370 18 H 0.071 0.929 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.169 1.169 25 C -0.034 4.034 26 C -0.340 4.340 27 S 0.394 5.606 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -39.453 -6.392 -2.368 40.038 hybrid contribution 1.148 1.780 0.088 2.120 sum -38.305 -4.612 -2.280 38.649 Atomic orbital electron populations 1.20845 0.81804 1.06086 1.05907 1.27630 1.03585 0.90452 0.96675 1.66263 1.04093 1.32302 1.19090 1.19743 0.89888 0.92186 1.01048 1.20576 0.89922 0.99576 0.99450 1.21081 0.96800 0.94630 0.96026 1.19768 0.91908 0.94799 1.07209 1.18259 0.85851 0.85134 0.75934 1.90788 1.83471 1.19795 1.51787 1.45744 1.05739 1.10195 1.73888 1.21208 0.78866 0.96430 1.02372 1.21407 0.93465 0.96494 1.00386 0.89071 1.21831 1.02294 0.99976 0.95984 1.20709 0.89418 0.88494 0.98234 1.42607 1.02874 1.04381 1.90080 1.19044 0.83348 0.93615 1.40986 0.92945 1.25577 0.95785 1.02010 1.02377 1.69898 1.05604 1.29112 1.58961 0.85363 0.78468 0.79226 0.78441 1.20296 1.22436 1.16860 1.20435 0.88684 1.00416 0.93908 1.23930 0.99379 0.97656 1.13067 1.83948 0.93985 1.09662 1.73050 0.87259 0.87360 0.88286 0.81996 0.81160 0.74569 0.91698 0.91468 0.92833 0.90028 0.93341 0.95751 0.95759 0.79733 0.93349 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.44 71.24 0.74 0.36 16 2 C 0.10 1.32 7.29 88.66 0.65 1.96 16 3 N -0.50 -9.23 10.56 -182.19 -1.92 -11.15 16 4 C 0.09 1.77 7.00 39.95 0.28 2.05 16 5 C -0.07 -1.09 10.03 22.43 0.23 -0.86 16 6 C -0.06 -0.84 9.44 22.17 0.21 -0.63 16 7 C -0.13 -2.47 5.87 -20.11 -0.12 -2.59 16 8 C 0.56 12.99 7.76 86.71 0.67 13.66 16 9 O -0.58 -18.20 16.34 -3.98 -0.06 -18.27 16 10 N -0.70 -13.15 5.23 -466.20 -2.44 -15.59 16 11 C 0.14 3.14 5.06 86.38 0.44 3.58 16 12 C -0.10 -2.45 2.46 -10.79 -0.03 -2.48 16 13 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.14 -3.25 8.94 71.99 0.64 -2.61 16 15 C 0.16 5.72 5.65 86.38 0.49 6.21 16 16 N -0.75 -34.02 5.13 -343.47 -1.76 -35.78 16 17 C -0.24 -13.65 10.47 84.03 0.88 -12.77 16 18 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.99 -63.37 13.97 21.65 0.30 -63.06 16 21 Si 0.96 44.34 27.74 68.60 1.90 46.24 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 25 C -0.01 -0.23 9.62 22.66 0.22 -0.01 16 26 C -0.22 -4.21 6.54 22.90 0.15 -4.06 16 27 S 0.14 1.87 23.11 -56.49 -1.31 0.57 16 28 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.17 1.04 6.38 -2.91 -0.02 1.02 16 33 H 0.42 5.01 5.67 -92.71 -0.53 4.49 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.25 7.18 -2.39 -0.02 1.24 16 38 H 0.05 1.28 7.18 -2.39 -0.02 1.27 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.37 15.44 4.71 -92.70 -0.44 15.00 16 42 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 43 H 0.14 2.89 7.64 -2.91 -0.02 2.87 16 Total: -1.00 -78.86 371.36 0.66 -78.21 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.03 Total: 20.46 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.92 Total: -1.63 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -5.82 Total: -125.59 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.06 Total: -18.27 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.24 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.31 Total: 0.57 kcal Total: -78.86 0.66 -78.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319264090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.571 kcal (2) G-P(sol) polarization free energy of solvation -78.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds