Wall clock time and date at job start Tue Mar 31 2020 18:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46881 * 2 1 4 4 C 1.52992 * 109.47252 * 239.99901 * 2 1 3 5 5 N 1.46502 * 109.47444 * 184.99643 * 4 2 1 6 6 C 1.36932 * 120.00434 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00127 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00196 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47147 * 89.99927 * 10 8 6 12 12 H 1.48501 * 109.47347 * 209.99902 * 10 8 6 13 13 H 1.48501 * 109.47219 * 330.00423 * 10 8 6 14 14 N 1.46500 * 109.46929 * 119.99797 * 2 1 3 15 15 C 1.46499 * 120.00120 * 60.00610 * 14 2 1 16 16 C 1.34784 * 119.99951 * 240.00154 * 14 2 1 17 17 O 1.21280 * 119.99844 * 359.97438 * 16 14 2 18 18 C 1.50695 * 119.99925 * 180.02562 * 16 14 2 19 19 C 1.50699 * 109.47251 * 179.97438 * 18 16 14 20 20 N 1.28736 * 121.08395 * 90.02197 * 19 18 16 21 21 S 1.69387 * 108.98436 * 179.97438 * 20 19 18 22 22 C 1.76506 * 96.12023 * 0.02562 * 21 20 19 23 23 C 1.38793 * 133.55703 * 180.02562 * 22 21 20 24 24 C 1.36714 * 119.75470 * 179.97438 * 23 22 21 25 25 C 1.38977 * 120.15465 * 359.97438 * 24 23 22 26 26 C 1.36037 * 121.15817 * 359.97438 * 25 24 23 27 27 C 1.40803 * 105.52227 * 0.22884 * 22 21 20 28 28 H 1.09003 * 109.47319 * 299.99794 * 1 2 3 29 29 H 1.08996 * 109.47312 * 59.99968 * 1 2 3 30 30 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47377 * 305.00029 * 4 2 1 32 32 H 1.09008 * 109.47238 * 64.99737 * 4 2 1 33 33 H 0.97002 * 119.99486 * 0.02562 * 5 4 2 34 34 H 0.96999 * 120.00625 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46729 * 269.99606 * 15 14 2 36 36 H 1.08991 * 109.47183 * 29.99290 * 15 14 2 37 37 H 1.09002 * 109.46973 * 149.99811 * 15 14 2 38 38 H 1.09006 * 109.47445 * 59.99758 * 18 16 14 39 39 H 1.08998 * 109.47170 * 300.00061 * 18 16 14 40 40 H 1.07996 * 120.11863 * 359.97438 * 23 22 21 41 41 H 1.07996 * 119.92210 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.41792 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.89191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8263 -1.1906 6 6 4.1839 -1.4387 -2.2066 7 1 3.6468 -1.8447 -3.0511 8 6 5.5673 -1.5387 -2.1508 9 7 6.2218 -1.0444 -1.1215 10 14 6.4999 -2.3748 -3.5366 11 1 6.8626 -1.3686 -4.5669 12 1 7.7351 -2.9978 -2.9967 13 1 5.6435 -3.4227 -4.1480 14 7 2.0183 -0.6906 1.1962 15 6 1.6645 -2.0932 1.4280 16 6 2.7932 -0.0355 2.0834 17 8 3.0865 1.1255 1.8912 18 6 3.2959 -0.7460 3.3136 19 6 4.1335 0.2010 4.1337 20 7 3.6030 0.9367 5.0473 21 16 4.8135 1.8746 5.7713 22 6 6.1441 1.2531 4.7922 23 6 7.5067 1.5141 4.7542 24 6 8.2996 0.8524 3.8583 25 6 7.7440 -0.0787 2.9890 26 6 6.4115 -0.3521 3.0082 27 6 5.5619 0.3176 3.9156 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4626 -0.4315 34 1 7.1884 -1.1146 -1.0822 35 1 0.7376 -2.1443 1.9994 36 1 1.5296 -2.5968 0.4709 37 1 2.4630 -2.5818 1.9864 38 1 3.9017 -1.6022 3.0167 39 1 2.4483 -1.0890 3.9070 40 1 7.9390 2.2373 5.4298 41 1 9.3603 1.0531 3.8267 42 1 8.3814 -0.5949 2.2863 43 1 6.0014 -1.0799 2.3236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319588929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:41 Heat of formation + Delta-G solvation = 33.034911 kcal Electronic energy + Delta-G solvation = -26732.380931 eV Core-core repulsion = 23097.424048 eV Total energy + Delta-G solvation = -3634.956883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.22745 -39.29983 -36.89966 -36.04644 -34.03069 -32.24769 -31.11119 -30.36863 -30.24525 -29.34469 -26.63716 -25.63661 -23.63119 -22.84447 -22.58118 -21.49451 -19.87896 -18.59947 -18.36860 -17.10864 -17.06503 -16.28211 -15.88874 -15.33873 -15.11771 -14.97600 -14.72524 -14.11963 -13.84911 -13.69902 -13.56675 -13.32237 -13.04160 -12.97932 -12.36839 -12.28793 -12.16717 -12.12270 -11.92493 -11.80444 -11.74637 -11.51623 -11.42835 -10.88070 -10.77555 -10.63660 -10.48238 -10.39949 -10.07117 -9.73406 -9.71936 -9.41836 -8.88880 -8.82790 -8.27631 -7.73857 -6.91579 -5.76172 -3.04571 0.62310 1.34412 1.53012 1.88409 2.18501 2.96917 3.32949 3.41345 3.47224 3.47640 3.78903 4.35752 4.57117 4.60864 4.79296 4.99349 5.07264 5.20280 5.28109 5.31078 5.39807 5.43357 5.45117 5.54472 5.58833 5.61421 5.68600 5.69511 5.91043 6.03553 6.05211 6.10765 6.14427 6.19212 6.34213 6.37067 6.49973 6.57515 6.71534 6.74258 6.92147 6.97560 7.68105 7.70122 8.41647 8.51178 9.53653 10.11746 10.48099 11.45772 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.004812 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.115230 B = 5817.613538 C = 8137.412904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.927 5.927 10 Si 0.904 3.096 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.595 5.595 15 C 0.079 3.921 16 C 0.526 3.474 17 O -0.529 6.529 18 C -0.078 4.078 19 C 0.189 3.811 20 N -0.437 5.437 21 S 0.165 5.835 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.080 4.080 25 C -0.117 4.117 26 C -0.029 4.029 27 C -0.122 4.122 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.386 0.614 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -0.841 12.834 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.575 5.575 10 Si 0.735 3.265 11 H -0.219 1.219 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.329 5.329 15 C -0.064 4.064 16 C 0.312 3.688 17 O -0.405 6.405 18 C -0.123 4.123 19 C -0.001 4.001 20 N -0.248 5.248 21 S 0.320 5.680 22 C -0.252 4.252 23 C -0.115 4.115 24 C -0.103 4.103 25 C -0.137 4.137 26 C -0.051 4.051 27 C -0.133 4.133 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.220 0.780 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.549 0.893 14.197 14.935 hybrid contribution 1.598 -1.315 -1.932 2.831 sum -2.951 -0.422 12.265 12.622 Atomic orbital electron populations 1.22048 0.95144 1.02048 1.02041 1.21389 0.93272 0.98533 0.84502 0.88258 1.21003 0.87141 0.96739 0.93622 1.42291 0.99663 1.70100 1.25120 1.19202 0.89467 1.29232 0.99152 0.91397 1.24688 0.96344 1.01655 0.97984 1.69674 1.06967 1.50806 1.30084 0.86250 0.79518 0.79000 0.81731 1.21854 1.21846 1.20922 1.47608 1.50659 1.12227 1.22394 1.21749 0.99898 0.81882 1.02891 1.19978 0.78270 0.86904 0.83637 1.90735 1.56700 1.16887 1.76168 1.20530 1.00287 0.97241 0.94220 1.21834 0.90800 0.94689 0.92819 1.75665 1.24414 1.10875 1.13847 1.84569 0.93248 1.48245 1.41946 1.23373 0.99075 1.01334 1.01410 1.19888 0.89891 1.01145 1.00581 1.21063 0.99924 0.95080 0.94196 1.20826 0.95303 0.98545 0.99043 1.20880 0.92746 0.97207 0.94222 1.20089 0.92176 1.00788 1.00276 0.92669 0.91464 0.92369 0.96105 0.95456 0.77963 0.93697 0.93145 0.90153 0.91245 0.86209 0.86846 0.85316 0.85000 0.84696 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.19 37.16 0.34 -1.64 16 2 C 0.13 2.14 2.80 -67.93 -0.19 1.94 16 3 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 4 C 0.14 2.81 5.50 -4.04 -0.02 2.79 16 5 N -0.73 -18.03 5.43 -59.91 -0.33 -18.36 16 6 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 7 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 8 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 9 N -0.93 -26.57 13.06 55.49 0.72 -25.85 16 10 Si 0.90 21.80 29.55 -169.99 -5.02 16.77 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.60 -9.51 2.24 -173.94 -0.39 -9.90 16 15 C 0.08 0.97 9.30 59.85 0.56 1.52 16 16 C 0.53 9.39 7.37 -10.98 -0.08 9.31 16 17 O -0.53 -11.75 15.36 5.56 0.09 -11.66 16 18 C -0.08 -1.12 4.53 -29.04 -0.13 -1.25 16 19 C 0.19 3.13 5.37 -81.23 -0.44 2.70 16 20 N -0.44 -7.45 11.84 34.00 0.40 -7.04 16 21 S 0.17 2.51 23.86 -107.50 -2.56 -0.05 16 22 C -0.13 -2.05 6.71 -38.41 -0.26 -2.30 16 23 C -0.09 -1.20 10.02 -39.93 -0.40 -1.60 16 24 C -0.08 -0.99 10.01 -39.86 -0.40 -1.39 16 25 C -0.12 -1.69 9.92 -40.10 -0.40 -2.09 16 26 C -0.03 -0.47 9.72 -39.25 -0.38 -0.85 16 27 C -0.12 -2.04 6.04 -105.14 -0.64 -2.68 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 31 H 0.02 0.39 6.88 -51.93 -0.36 0.04 16 32 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.39 10.33 7.06 -40.82 -0.29 10.04 16 34 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.04 6.53 -51.93 -0.34 0.70 16 37 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 38 H 0.12 1.51 6.80 -51.93 -0.35 1.15 16 39 H 0.11 1.31 8.11 -51.93 -0.42 0.89 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.14 2.40 7.64 -52.49 -0.40 2.00 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -33.73 371.56 -9.93 -43.66 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.76 Total: 9.42 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.68 Total: -2.58 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.41 Total: -61.15 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.56 Total: -0.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.73 -9.93 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319588929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.697 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds