Wall clock time and date at job start Tue Mar 31 2020 18:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46881 * 2 1 4 4 C 1.52992 * 109.47252 * 239.99901 * 2 1 3 5 5 N 1.46502 * 109.47444 * 184.99643 * 4 2 1 6 6 C 1.36932 * 120.00434 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00127 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00196 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47147 * 89.99927 * 10 8 6 12 12 H 1.48501 * 109.47347 * 209.99902 * 10 8 6 13 13 H 1.48501 * 109.47219 * 330.00423 * 10 8 6 14 14 N 1.46500 * 109.46929 * 119.99797 * 2 1 3 15 15 C 1.46499 * 120.00120 * 60.00610 * 14 2 1 16 16 C 1.34784 * 119.99951 * 240.00154 * 14 2 1 17 17 O 1.21280 * 119.99844 * 359.97438 * 16 14 2 18 18 C 1.50695 * 119.99925 * 180.02562 * 16 14 2 19 19 C 1.50699 * 109.47251 * 179.97438 * 18 16 14 20 20 N 1.28736 * 121.08395 * 90.02197 * 19 18 16 21 21 S 1.69387 * 108.98436 * 179.97438 * 20 19 18 22 22 C 1.76506 * 96.12023 * 0.02562 * 21 20 19 23 23 C 1.38793 * 133.55703 * 180.02562 * 22 21 20 24 24 C 1.36714 * 119.75470 * 179.97438 * 23 22 21 25 25 C 1.38977 * 120.15465 * 359.97438 * 24 23 22 26 26 C 1.36037 * 121.15817 * 359.97438 * 25 24 23 27 27 C 1.40803 * 105.52227 * 0.22884 * 22 21 20 28 28 H 1.09003 * 109.47319 * 299.99794 * 1 2 3 29 29 H 1.08996 * 109.47312 * 59.99968 * 1 2 3 30 30 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47377 * 305.00029 * 4 2 1 32 32 H 1.09008 * 109.47238 * 64.99737 * 4 2 1 33 33 H 0.97002 * 119.99486 * 0.02562 * 5 4 2 34 34 H 0.96999 * 120.00625 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46729 * 269.99606 * 15 14 2 36 36 H 1.08991 * 109.47183 * 29.99290 * 15 14 2 37 37 H 1.09002 * 109.46973 * 149.99811 * 15 14 2 38 38 H 1.09006 * 109.47445 * 59.99758 * 18 16 14 39 39 H 1.08998 * 109.47170 * 300.00061 * 18 16 14 40 40 H 1.07996 * 120.11863 * 359.97438 * 23 22 21 41 41 H 1.07996 * 119.92210 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.41792 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.89191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8263 -1.1906 6 6 4.1839 -1.4387 -2.2066 7 1 3.6468 -1.8447 -3.0511 8 6 5.5673 -1.5387 -2.1508 9 7 6.2218 -1.0444 -1.1215 10 14 6.4999 -2.3748 -3.5366 11 1 6.8626 -1.3686 -4.5669 12 1 7.7351 -2.9978 -2.9967 13 1 5.6435 -3.4227 -4.1480 14 7 2.0183 -0.6906 1.1962 15 6 1.6645 -2.0932 1.4280 16 6 2.7932 -0.0355 2.0834 17 8 3.0865 1.1255 1.8912 18 6 3.2959 -0.7460 3.3136 19 6 4.1335 0.2010 4.1337 20 7 3.6030 0.9367 5.0473 21 16 4.8135 1.8746 5.7713 22 6 6.1441 1.2531 4.7922 23 6 7.5067 1.5141 4.7542 24 6 8.2996 0.8524 3.8583 25 6 7.7440 -0.0787 2.9890 26 6 6.4115 -0.3521 3.0082 27 6 5.5619 0.3176 3.9156 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4626 -0.4315 34 1 7.1884 -1.1146 -1.0822 35 1 0.7376 -2.1443 1.9994 36 1 1.5296 -2.5968 0.4709 37 1 2.4630 -2.5818 1.9864 38 1 3.9017 -1.6022 3.0167 39 1 2.4483 -1.0890 3.9070 40 1 7.9390 2.2373 5.4298 41 1 9.3603 1.0531 3.8267 42 1 8.3814 -0.5949 2.2863 43 1 6.0014 -1.0799 2.3236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319588929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:40 Heat of formation + Delta-G solvation = 12.409939 kcal Electronic energy + Delta-G solvation = -26733.275297 eV Core-core repulsion = 23097.424048 eV Total energy + Delta-G solvation = -3635.851249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48644 -40.53348 -38.17383 -37.42461 -35.79949 -33.77331 -32.36904 -31.91596 -31.47182 -30.54958 -27.74600 -27.34302 -24.87363 -24.38704 -23.90063 -22.84554 -21.15682 -19.92409 -19.51733 -19.05102 -18.39574 -17.41337 -17.23538 -16.67582 -16.52401 -16.32058 -16.06404 -15.49834 -15.23292 -15.20406 -14.89337 -14.85507 -14.30133 -14.14384 -13.81217 -13.68165 -13.32684 -13.22615 -13.19689 -13.07049 -12.88737 -12.86069 -12.77206 -12.61171 -12.46711 -12.10784 -11.80891 -11.76959 -11.69657 -11.61690 -11.02542 -10.90145 -10.71835 -9.95805 -9.56777 -8.92973 -8.89671 -7.86081 -5.15619 -0.54737 0.20095 0.37181 0.68836 1.00598 1.49297 1.51144 1.58390 1.62515 2.10498 2.59325 2.65413 3.20808 3.44974 3.45346 3.58640 3.85268 3.97123 4.03624 4.12389 4.16894 4.25670 4.31341 4.35385 4.38310 4.47691 4.50255 4.61308 4.77207 4.80789 4.87393 4.93871 4.94673 5.00603 5.06347 5.16306 5.25217 5.31431 5.44054 5.53914 5.57183 5.66857 5.82962 6.33319 6.42715 7.18267 7.40299 8.14154 8.39568 9.35942 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.004812 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.115230 B = 5817.613538 C = 8137.412904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 H 0.062 0.938 4 C 0.143 3.857 5 N -0.740 5.740 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.065 4.065 9 N -0.955 5.955 10 Si 0.967 3.033 11 H -0.296 1.296 12 H -0.293 1.293 13 H -0.271 1.271 14 N -0.593 5.593 15 C 0.071 3.929 16 C 0.519 3.481 17 O -0.584 6.584 18 C -0.071 4.071 19 C 0.180 3.820 20 N -0.461 5.461 21 S 0.177 5.823 22 C -0.147 4.147 23 C -0.090 4.090 24 C -0.069 4.069 25 C -0.124 4.124 26 C -0.050 4.050 27 C -0.147 4.147 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.373 0.627 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.142 0.858 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -1.843 13.178 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.080 0.920 4 C 0.016 3.984 5 N -0.382 5.382 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.258 4.258 9 N -0.605 5.605 10 Si 0.797 3.203 11 H -0.223 1.223 12 H -0.220 1.220 13 H -0.196 1.196 14 N -0.325 5.325 15 C -0.070 4.070 16 C 0.306 3.694 17 O -0.465 6.465 18 C -0.116 4.116 19 C -0.010 4.010 20 N -0.273 5.273 21 S 0.332 5.668 22 C -0.267 4.267 23 C -0.113 4.113 24 C -0.091 4.091 25 C -0.144 4.144 26 C -0.072 4.072 27 C -0.158 4.158 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.205 0.795 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.190 0.810 42 H 0.160 0.840 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.722 -0.158 14.525 15.274 hybrid contribution 1.636 -0.980 -2.073 2.817 sum -3.086 -1.138 12.452 12.879 Atomic orbital electron populations 1.21954 0.91420 1.03760 1.02846 1.21248 0.95942 0.96242 0.83929 0.91970 1.21171 0.84464 0.97851 0.94923 1.42464 1.01750 1.69853 1.24182 1.19555 0.90016 1.28786 0.99643 0.90931 1.25435 0.97277 1.02873 1.00240 1.69827 1.06853 1.52100 1.31683 0.85255 0.78169 0.78032 0.78890 1.22332 1.21971 1.19614 1.47737 1.49787 1.13589 1.21427 1.22039 1.02100 0.79476 1.03403 1.20542 0.77763 0.86468 0.84605 1.90699 1.58794 1.19369 1.77597 1.20587 1.01300 0.96766 0.92906 1.22106 0.91189 0.94880 0.92819 1.75570 1.25570 1.11567 1.14558 1.84341 0.92915 1.47955 1.41590 1.23709 1.00264 1.01329 1.01395 1.20382 0.88831 1.01243 1.00818 1.21484 1.01796 0.93318 0.92540 1.21078 0.94669 0.99079 0.99599 1.20832 0.93833 0.97882 0.94676 1.20262 0.92569 1.01829 1.01145 0.92194 0.90394 0.90099 0.94202 0.95698 0.79519 0.94072 0.89489 0.90658 0.90075 0.84816 0.83758 0.81959 0.80978 0.84020 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.19 71.98 0.66 -2.70 16 2 C 0.13 4.40 2.80 44.99 0.13 4.53 16 3 H 0.06 2.58 6.90 -2.38 -0.02 2.56 16 4 C 0.14 5.56 5.50 86.38 0.48 6.04 16 5 N -0.74 -37.24 5.43 -343.45 -1.87 -39.11 16 6 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 7 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 8 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 9 N -0.95 -55.88 13.06 21.65 0.28 -55.60 16 10 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 11 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 N -0.59 -18.75 2.24 -822.61 -1.85 -20.59 16 15 C 0.07 1.60 9.30 127.77 1.19 2.79 16 16 C 0.52 18.92 7.37 87.65 0.65 19.57 16 17 O -0.58 -27.30 15.36 -3.03 -0.05 -27.35 16 18 C -0.07 -2.06 4.53 29.10 0.13 -1.93 16 19 C 0.18 6.11 5.37 44.74 0.24 6.35 16 20 N -0.46 -15.92 11.84 -46.33 -0.55 -16.47 16 21 S 0.18 5.37 23.86 -56.49 -1.35 4.03 16 22 C -0.15 -4.52 6.71 23.03 0.15 -4.37 16 23 C -0.09 -2.17 10.02 22.05 0.22 -1.95 16 24 C -0.07 -1.57 10.01 22.09 0.22 -1.35 16 25 C -0.12 -3.57 9.92 21.93 0.22 -3.35 16 26 C -0.05 -1.70 9.72 22.49 0.22 -1.48 16 27 C -0.15 -5.05 6.04 -20.20 -0.12 -5.18 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.57 7.67 -2.38 -0.02 1.55 16 31 H 0.04 1.43 6.88 -2.39 -0.02 1.41 16 32 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.37 20.64 7.06 -92.71 -0.65 19.99 16 34 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.79 6.53 -2.39 -0.02 1.77 16 37 H 0.08 1.63 6.44 -2.39 -0.02 1.62 16 38 H 0.13 3.41 6.80 -2.38 -0.02 3.39 16 39 H 0.14 3.14 8.11 -2.39 -0.02 3.12 16 40 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.12 4.47 7.64 -2.91 -0.02 4.45 16 Total: -1.00 -75.66 371.56 2.73 -72.93 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.38 Total: 34.08 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.69 Total: 1.12 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -3.98 Total: -131.78 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.35 Total: 4.03 kcal Total: -75.66 2.73 -72.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319588929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.340 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds