Wall clock time and date at job start Tue Mar 31 2020 18:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47223 * 2 1 4 4 C 1.53005 * 109.47394 * 120.00660 * 2 1 3 5 5 N 1.46493 * 109.47370 * 175.00038 * 4 2 1 6 6 C 1.36945 * 119.99985 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99480 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99893 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99946 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00259 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46905 * 89.99891 * 10 8 6 12 12 H 1.48493 * 109.47053 * 210.00036 * 10 8 6 13 13 H 1.48500 * 109.47144 * 330.00618 * 10 8 6 14 14 N 1.46507 * 109.47095 * 240.00248 * 2 1 3 15 15 C 1.46495 * 120.00009 * 299.99955 * 14 2 1 16 16 C 1.34776 * 119.99631 * 120.00114 * 14 2 1 17 17 O 1.21281 * 120.00265 * 359.97438 * 16 14 2 18 18 C 1.50708 * 119.99724 * 179.97438 * 16 14 2 19 19 C 1.50696 * 109.46959 * 179.97438 * 18 16 14 20 20 N 1.28730 * 121.08637 * 269.71710 * 19 18 16 21 21 S 1.69387 * 108.98872 * 180.27659 * 20 19 18 22 22 C 1.76517 * 96.11897 * 359.97438 * 21 20 19 23 23 C 1.38778 * 133.55816 * 179.97438 * 22 21 20 24 24 C 1.36720 * 119.75832 * 180.02562 * 23 22 21 25 25 C 1.38971 * 120.15279 * 0.02562 * 24 23 22 26 26 C 1.36045 * 121.15676 * 0.02562 * 25 24 23 27 27 C 1.40805 * 105.51752 * 0.02562 * 22 21 20 28 28 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46909 * 299.99467 * 1 2 3 30 30 H 1.09001 * 109.46910 * 59.99637 * 1 2 3 31 31 H 1.09000 * 109.46342 * 294.99859 * 4 2 1 32 32 H 1.09003 * 109.46851 * 54.99454 * 4 2 1 33 33 H 0.97001 * 120.00279 * 359.97438 * 5 4 2 34 34 H 0.96992 * 120.00113 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47155 * 269.99809 * 15 14 2 36 36 H 1.08996 * 109.47135 * 30.00016 * 15 14 2 37 37 H 1.09006 * 109.47043 * 150.00464 * 15 14 2 38 38 H 1.09002 * 109.47028 * 60.00195 * 18 16 14 39 39 H 1.08994 * 109.47095 * 300.00023 * 18 16 14 40 40 H 1.08005 * 120.12012 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.92156 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.42200 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.89102 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1839 -1.4382 2.2071 7 1 3.6469 -1.8427 3.0523 8 6 5.5673 -1.5382 2.1512 9 7 6.2245 -2.1266 3.1281 10 14 6.4960 -0.8392 0.6890 11 1 6.8577 0.5750 0.9625 12 1 7.7315 -1.6313 0.4628 13 1 5.6371 -0.9053 -0.5206 14 7 2.0183 -0.6906 -1.1963 15 6 1.6644 -2.0931 -1.4281 16 6 2.7932 -0.0355 -2.0833 17 8 3.0858 1.1258 -1.8916 18 6 3.2960 -0.7460 -3.3136 19 6 4.1326 0.2014 -4.1342 20 7 3.6022 0.9329 -5.0511 21 16 4.8125 1.8676 -5.7794 22 6 6.1432 1.2507 -4.7974 23 6 7.5057 1.5120 -4.7605 24 6 8.2987 0.8545 -3.8617 25 6 7.7432 -0.0727 -2.9881 26 6 6.4107 -0.3464 -3.0061 27 6 5.5620 0.3148 -3.9206 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4628 0.4315 34 1 7.1911 -2.1968 3.0889 35 1 2.4158 -2.7376 -0.9719 36 1 0.6905 -2.3001 -0.9848 37 1 1.6239 -2.2851 -2.5004 38 1 2.4485 -1.0889 -3.9071 39 1 3.9017 -1.6021 -3.0167 40 1 7.9381 2.2316 -5.4401 41 1 9.3594 1.0555 -3.8310 42 1 8.3807 -0.5856 -2.2832 43 1 6.0008 -1.0710 -2.3183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319588930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:45 Heat of formation + Delta-G solvation = 38.679358 kcal Electronic energy + Delta-G solvation = -26986.252321 eV Core-core repulsion = 23351.540199 eV Total energy + Delta-G solvation = -3634.712122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.45813 -39.53319 -37.11608 -36.26633 -34.22268 -32.35397 -31.43352 -30.71051 -30.55748 -29.57644 -26.83430 -25.93634 -23.85701 -23.07245 -22.35501 -21.57830 -20.10702 -18.84338 -18.65057 -17.59141 -17.28889 -16.53757 -16.05939 -15.56450 -15.31214 -15.22847 -14.72925 -14.46137 -14.17247 -13.94320 -13.82067 -13.30202 -13.22355 -12.91005 -12.64101 -12.48995 -12.36761 -12.27292 -12.11315 -12.03001 -11.91329 -11.82359 -11.72726 -11.02896 -10.90698 -10.80931 -10.61882 -10.55765 -10.08933 -9.92842 -9.64623 -9.62396 -9.06591 -8.92877 -8.45684 -7.95224 -7.25321 -5.79320 -3.14660 0.39420 1.07132 1.32451 1.68556 1.96701 2.73606 3.13153 3.24957 3.36292 3.42691 3.52721 4.12840 4.36819 4.55120 4.57625 4.76155 4.86110 4.97591 5.05680 5.13828 5.15824 5.20490 5.26458 5.34228 5.42850 5.45300 5.51468 5.59401 5.76767 5.79048 5.82809 5.88898 5.96271 6.01502 6.07848 6.21201 6.29183 6.34217 6.48844 6.59320 6.65003 6.80904 7.49181 7.96480 8.28089 8.39258 9.18883 9.91549 10.12446 11.38404 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005525 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.817455 B = 5066.742958 C = 7227.969649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.122 3.878 3 H 0.100 0.900 4 C 0.149 3.851 5 N -0.752 5.752 6 C -0.241 4.241 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.879 3.121 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.272 1.272 14 N -0.597 5.597 15 C 0.073 3.927 16 C 0.522 3.478 17 O -0.532 6.532 18 C -0.081 4.081 19 C 0.186 3.814 20 N -0.433 5.433 21 S 0.178 5.822 22 C -0.131 4.131 23 C -0.086 4.086 24 C -0.078 4.078 25 C -0.126 4.126 26 C -0.049 4.049 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 1.851 -17.630 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.118 0.882 4 C 0.021 3.979 5 N -0.397 5.397 6 C -0.371 4.371 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.198 1.198 14 N -0.331 5.331 15 C -0.070 4.070 16 C 0.308 3.692 17 O -0.408 6.408 18 C -0.125 4.125 19 C -0.004 4.004 20 N -0.244 5.244 21 S 0.333 5.667 22 C -0.252 4.252 23 C -0.109 4.109 24 C -0.100 4.100 25 C -0.146 4.146 26 C -0.071 4.071 27 C -0.133 4.133 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.056 3.545 -18.926 19.908 hybrid contribution 1.656 -0.555 0.439 1.801 sum -3.400 2.990 -18.488 19.034 Atomic orbital electron populations 1.22050 0.94749 1.02251 1.02307 1.21481 0.93742 0.98487 0.84386 0.88171 1.20982 0.85717 0.97427 0.93779 1.42634 1.01301 1.71341 1.24451 1.19058 0.89866 1.29233 0.98962 0.89239 1.24663 0.96171 1.00674 0.97683 1.69701 1.07242 1.48701 1.32575 0.86686 0.79695 0.79075 0.83534 1.21112 1.21616 1.19841 1.47699 1.50414 1.12506 1.22455 1.21846 1.02107 0.81810 1.01221 1.20046 0.78461 0.86921 0.83797 1.90733 1.57060 1.16756 1.76299 1.20565 1.00424 0.97201 0.94337 1.21795 0.90624 0.94946 0.93072 1.75656 1.24526 1.10823 1.13396 1.84642 0.92821 1.47998 1.41191 1.23436 0.99268 1.01119 1.01337 1.19946 0.89809 1.00897 1.00247 1.21066 1.00163 0.94808 0.93983 1.20840 0.95107 0.98973 0.99706 1.21074 0.93020 0.97915 0.95111 1.20064 0.92297 1.00795 1.00121 0.92123 0.91156 0.92539 0.94528 0.95224 0.80436 0.93132 0.91300 0.90627 0.91531 0.86386 0.86335 0.84887 0.84589 0.84965 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.17 37.16 0.34 -1.49 16 2 C 0.12 1.93 2.80 -67.93 -0.19 1.74 16 3 H 0.10 1.83 6.90 -51.93 -0.36 1.47 16 4 C 0.15 2.78 5.56 -4.04 -0.02 2.76 16 5 N -0.75 -17.70 5.24 -59.91 -0.31 -18.01 16 6 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 7 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 10 Si 0.88 21.75 27.29 -169.99 -4.64 17.11 16 11 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.07 4.49 56.52 0.25 -5.82 16 14 N -0.60 -8.91 2.24 -173.93 -0.39 -9.30 16 15 C 0.07 0.82 9.40 59.84 0.56 1.38 16 16 C 0.52 8.71 7.37 -10.98 -0.08 8.63 16 17 O -0.53 -11.07 15.36 5.56 0.09 -10.99 16 18 C -0.08 -1.08 4.53 -29.03 -0.13 -1.21 16 19 C 0.19 2.91 5.37 -81.23 -0.44 2.47 16 20 N -0.43 -6.91 11.84 34.00 0.40 -6.51 16 21 S 0.18 2.51 23.86 -107.50 -2.56 -0.05 16 22 C -0.13 -1.90 6.71 -38.41 -0.26 -2.16 16 23 C -0.09 -1.02 10.02 -39.93 -0.40 -1.42 16 24 C -0.08 -0.89 10.01 -39.86 -0.40 -1.29 16 25 C -0.13 -1.73 9.92 -40.10 -0.40 -2.13 16 26 C -0.05 -0.77 9.39 -39.24 -0.37 -1.14 16 27 C -0.12 -1.92 6.04 -105.14 -0.64 -2.56 16 28 H 0.06 0.63 6.66 -51.93 -0.35 0.28 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.53 7.84 -51.93 -0.41 0.13 16 33 H 0.36 8.67 4.93 -40.82 -0.20 8.47 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.72 6.43 -51.93 -0.33 0.39 16 37 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 38 H 0.12 1.23 7.40 -51.93 -0.38 0.84 16 39 H 0.12 1.37 7.51 -51.93 -0.39 0.98 16 40 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.14 2.21 5.47 -52.49 -0.29 1.92 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -35.43 363.46 -9.55 -44.98 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.71 Total: 8.81 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.67 Total: -3.29 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.47 Total: -62.05 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.64 Total: 17.11 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.56 Total: -0.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.43 -9.55 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319588930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.658 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds