Wall clock time and date at job start Tue Mar 31 2020 18:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47223 * 2 1 4 4 C 1.53005 * 109.47394 * 120.00660 * 2 1 3 5 5 N 1.46493 * 109.47370 * 175.00038 * 4 2 1 6 6 C 1.36945 * 119.99985 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99480 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99893 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99946 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00259 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46905 * 89.99891 * 10 8 6 12 12 H 1.48493 * 109.47053 * 210.00036 * 10 8 6 13 13 H 1.48500 * 109.47144 * 330.00618 * 10 8 6 14 14 N 1.46507 * 109.47095 * 240.00248 * 2 1 3 15 15 C 1.46495 * 120.00009 * 299.99955 * 14 2 1 16 16 C 1.34776 * 119.99631 * 120.00114 * 14 2 1 17 17 O 1.21281 * 120.00265 * 359.97438 * 16 14 2 18 18 C 1.50708 * 119.99724 * 179.97438 * 16 14 2 19 19 C 1.50696 * 109.46959 * 179.97438 * 18 16 14 20 20 N 1.28730 * 121.08637 * 269.71710 * 19 18 16 21 21 S 1.69387 * 108.98872 * 180.27659 * 20 19 18 22 22 C 1.76517 * 96.11897 * 359.97438 * 21 20 19 23 23 C 1.38778 * 133.55816 * 179.97438 * 22 21 20 24 24 C 1.36720 * 119.75832 * 180.02562 * 23 22 21 25 25 C 1.38971 * 120.15279 * 0.02562 * 24 23 22 26 26 C 1.36045 * 121.15676 * 0.02562 * 25 24 23 27 27 C 1.40805 * 105.51752 * 0.02562 * 22 21 20 28 28 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46909 * 299.99467 * 1 2 3 30 30 H 1.09001 * 109.46910 * 59.99637 * 1 2 3 31 31 H 1.09000 * 109.46342 * 294.99859 * 4 2 1 32 32 H 1.09003 * 109.46851 * 54.99454 * 4 2 1 33 33 H 0.97001 * 120.00279 * 359.97438 * 5 4 2 34 34 H 0.96992 * 120.00113 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47155 * 269.99809 * 15 14 2 36 36 H 1.08996 * 109.47135 * 30.00016 * 15 14 2 37 37 H 1.09006 * 109.47043 * 150.00464 * 15 14 2 38 38 H 1.09002 * 109.47028 * 60.00195 * 18 16 14 39 39 H 1.08994 * 109.47095 * 300.00023 * 18 16 14 40 40 H 1.08005 * 120.12012 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.92156 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.42200 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.89102 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1839 -1.4382 2.2071 7 1 3.6469 -1.8427 3.0523 8 6 5.5673 -1.5382 2.1512 9 7 6.2245 -2.1266 3.1281 10 14 6.4960 -0.8392 0.6890 11 1 6.8577 0.5750 0.9625 12 1 7.7315 -1.6313 0.4628 13 1 5.6371 -0.9053 -0.5206 14 7 2.0183 -0.6906 -1.1963 15 6 1.6644 -2.0931 -1.4281 16 6 2.7932 -0.0355 -2.0833 17 8 3.0858 1.1258 -1.8916 18 6 3.2960 -0.7460 -3.3136 19 6 4.1326 0.2014 -4.1342 20 7 3.6022 0.9329 -5.0511 21 16 4.8125 1.8676 -5.7794 22 6 6.1432 1.2507 -4.7974 23 6 7.5057 1.5120 -4.7605 24 6 8.2987 0.8545 -3.8617 25 6 7.7432 -0.0727 -2.9881 26 6 6.4107 -0.3464 -3.0061 27 6 5.5620 0.3148 -3.9206 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4628 0.4315 34 1 7.1911 -2.1968 3.0889 35 1 2.4158 -2.7376 -0.9719 36 1 0.6905 -2.3001 -0.9848 37 1 1.6239 -2.2851 -2.5004 38 1 2.4485 -1.0889 -3.9071 39 1 3.9017 -1.6021 -3.0167 40 1 7.9381 2.2316 -5.4401 41 1 9.3594 1.0555 -3.8310 42 1 8.3807 -0.5856 -2.2832 43 1 6.0008 -1.0710 -2.3183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319588930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:44 Heat of formation + Delta-G solvation = 15.665719 kcal Electronic energy + Delta-G solvation = -26987.250267 eV Core-core repulsion = 23351.540199 eV Total energy + Delta-G solvation = -3635.710068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59893 -40.65531 -38.29193 -37.54820 -35.96524 -33.90288 -32.74910 -32.20134 -31.58729 -30.66331 -27.85488 -27.56113 -24.93956 -24.18587 -23.97511 -22.94972 -21.31400 -20.16086 -19.70324 -19.47171 -18.47842 -17.55287 -17.28739 -16.74911 -16.65353 -16.40674 -16.22202 -15.90950 -15.37774 -15.18009 -14.99281 -14.78943 -14.40880 -14.23203 -14.14065 -13.81753 -13.61356 -13.45550 -13.19823 -13.10685 -13.06971 -12.91939 -12.89826 -12.72585 -12.42576 -12.19527 -11.86661 -11.82705 -11.72810 -11.61184 -11.15539 -10.99252 -10.83437 -10.07753 -9.66432 -9.30869 -8.99792 -8.03624 -5.36626 -0.65261 0.04815 0.28513 0.61136 0.90695 1.25744 1.38257 1.40942 1.51111 2.01096 2.44669 2.51369 3.09688 3.27283 3.33438 3.45422 3.63883 3.82010 3.91648 3.99751 4.06317 4.16425 4.23320 4.26041 4.28850 4.36867 4.37389 4.50909 4.72748 4.77134 4.78242 4.84247 4.89575 4.90970 5.04583 5.12067 5.13226 5.29681 5.30489 5.42521 5.57169 5.68942 5.74382 6.19364 6.33417 7.05348 7.06882 7.82608 8.00926 9.16838 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005525 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.817455 B = 5066.742958 C = 7227.969649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.127 3.873 3 H 0.070 0.930 4 C 0.146 3.854 5 N -0.755 5.755 6 C -0.229 4.229 7 H 0.062 0.938 8 C -0.060 4.060 9 N -0.980 5.980 10 Si 0.941 3.059 11 H -0.302 1.302 12 H -0.279 1.279 13 H -0.244 1.244 14 N -0.596 5.596 15 C 0.065 3.935 16 C 0.515 3.485 17 O -0.582 6.582 18 C -0.077 4.077 19 C 0.177 3.823 20 N -0.457 5.457 21 S 0.187 5.813 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.068 4.068 25 C -0.136 4.136 26 C -0.072 4.072 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.361 0.639 34 H 0.257 0.743 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.142 0.858 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 1.741 -19.933 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.023 3.977 3 H 0.089 0.911 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.360 4.360 7 H 0.080 0.920 8 C -0.252 4.252 9 N -0.631 5.631 10 Si 0.769 3.231 11 H -0.229 1.229 12 H -0.204 1.204 13 H -0.169 1.169 14 N -0.328 5.328 15 C -0.076 4.076 16 C 0.302 3.698 17 O -0.463 6.463 18 C -0.121 4.121 19 C -0.013 4.013 20 N -0.269 5.269 21 S 0.343 5.657 22 C -0.266 4.266 23 C -0.106 4.106 24 C -0.090 4.090 25 C -0.156 4.156 26 C -0.094 4.094 27 C -0.158 4.158 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.194 0.806 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.159 0.841 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.280 3.398 -21.255 22.163 hybrid contribution 1.668 -0.503 1.230 2.133 sum -3.612 2.896 -20.024 20.552 Atomic orbital electron populations 1.21972 0.91181 1.03929 1.03104 1.21328 0.96311 0.96481 0.83530 0.91135 1.21191 0.82972 0.98511 0.95421 1.42668 1.03312 1.70780 1.23235 1.19053 0.90073 1.27951 0.98876 0.92014 1.25405 0.97251 1.01852 1.00670 1.69864 1.07404 1.50896 1.34948 0.85712 0.79080 0.76992 0.81283 1.22943 1.20441 1.16853 1.47844 1.49633 1.13836 1.21514 1.22133 1.02597 0.79138 1.03761 1.20610 0.77966 0.86522 0.84696 1.90706 1.58964 1.19021 1.77589 1.20670 1.01568 0.96836 0.93060 1.22081 0.91026 0.95113 0.93078 1.75573 1.25653 1.11524 1.14120 1.84454 0.92608 1.47749 1.40929 1.23764 1.00404 1.01122 1.01295 1.20434 0.88766 1.00962 1.00475 1.21504 1.02014 0.93121 0.92396 1.21144 0.94608 0.99501 1.00345 1.21081 0.94006 0.98632 0.95713 1.20250 0.92669 1.01834 1.01024 0.89946 0.90254 0.91906 0.94875 0.93664 0.80581 0.93377 0.92737 0.88523 0.88088 0.83251 0.84605 0.81634 0.80673 0.84055 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.17 71.98 0.66 -2.36 16 2 C 0.13 3.87 2.80 44.99 0.13 4.00 16 3 H 0.07 2.60 6.90 -2.39 -0.02 2.58 16 4 C 0.15 5.34 5.56 86.38 0.48 5.82 16 5 N -0.75 -35.48 5.24 -343.46 -1.80 -37.28 16 6 C -0.23 -12.96 10.47 84.03 0.88 -12.08 16 7 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 8 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 9 N -0.98 -62.32 13.97 21.65 0.30 -62.01 16 10 Si 0.94 45.63 27.29 68.60 1.87 47.51 16 11 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.24 -10.51 4.49 99.48 0.45 -10.07 16 14 N -0.60 -16.73 2.24 -822.58 -1.85 -18.57 16 15 C 0.07 1.26 9.40 127.77 1.20 2.46 16 16 C 0.51 16.63 7.37 87.66 0.65 17.28 16 17 O -0.58 -24.38 15.36 -3.03 -0.05 -24.43 16 18 C -0.08 -1.94 4.53 29.10 0.13 -1.80 16 19 C 0.18 5.37 5.37 44.74 0.24 5.61 16 20 N -0.46 -14.26 11.84 -46.34 -0.55 -14.81 16 21 S 0.19 5.09 23.86 -56.49 -1.35 3.74 16 22 C -0.15 -3.98 6.71 23.03 0.15 -3.83 16 23 C -0.08 -1.74 10.02 22.04 0.22 -1.52 16 24 C -0.07 -1.33 10.01 22.09 0.22 -1.11 16 25 C -0.14 -3.43 9.92 21.94 0.22 -3.21 16 26 C -0.07 -2.17 9.39 22.49 0.21 -1.95 16 27 C -0.15 -4.50 6.04 -20.20 -0.12 -4.62 16 28 H 0.08 1.39 6.66 -2.39 -0.02 1.37 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.55 7.84 -2.39 -0.02 1.53 16 33 H 0.36 17.18 4.93 -92.71 -0.46 16.72 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.47 6.43 -2.39 -0.02 1.46 16 37 H 0.10 1.26 6.44 -2.38 -0.02 1.25 16 38 H 0.15 2.68 7.40 -2.39 -0.02 2.66 16 39 H 0.14 2.87 7.51 -2.39 -0.02 2.86 16 40 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 43 H 0.13 3.92 5.47 -2.91 -0.02 3.91 16 Total: -1.00 -80.34 363.46 2.65 -77.69 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.33 Total: 28.55 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.74 Total: -0.40 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -3.89 Total: -132.67 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.87 Total: 47.51 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.35 Total: 3.74 kcal Total: -80.34 2.65 -77.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319588930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.360 kcal (2) G-P(sol) polarization free energy of solvation -80.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds