Wall clock time and date at job start Tue Mar 31 2020 18:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47337 * 2 1 4 4 C 1.46506 * 120.00408 * 277.51586 * 3 2 1 5 5 C 1.53004 * 109.46762 * 269.99864 * 4 3 2 6 6 N 1.46499 * 109.46744 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99938 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99983 * 0.02562 * 7 6 5 9 9 C 1.38812 * 119.99916 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00363 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47320 * 89.99534 * 11 9 7 13 13 H 1.48494 * 109.47272 * 210.00134 * 11 9 7 14 14 H 1.48504 * 109.46884 * 329.99803 * 11 9 7 15 15 C 1.34777 * 119.99988 * 97.51280 * 3 2 1 16 16 O 1.21587 * 120.00216 * 185.76863 * 15 3 2 17 17 C 1.47589 * 120.00050 * 5.77030 * 15 3 2 18 18 C 1.40195 * 120.13029 * 134.19025 * 17 15 3 19 19 C 1.35747 * 120.61604 * 180.30030 * 18 17 15 20 20 C 1.41252 * 120.63498 * 359.44977 * 19 18 17 21 21 N 1.34414 * 129.48129 * 180.22982 * 20 19 18 22 22 C 1.28052 * 117.91363 * 180.29667 * 21 20 19 23 23 C 1.50702 * 124.23966 * 180.02562 * 22 21 20 24 24 S 1.70649 * 111.52068 * 359.97438 * 22 21 20 25 25 C 1.40147 * 118.74251 * 0.53746 * 20 19 18 26 26 C 1.38918 * 120.40808 * 359.74292 * 25 20 19 27 27 H 1.08995 * 109.47592 * 189.42100 * 1 2 3 28 28 H 1.09011 * 109.46804 * 309.42065 * 1 2 3 29 29 H 1.09004 * 109.47178 * 69.41181 * 1 2 3 30 30 H 1.09004 * 109.46662 * 240.00677 * 2 1 3 31 31 H 1.08994 * 109.47401 * 120.00156 * 2 1 3 32 32 H 1.09000 * 109.46974 * 29.99436 * 4 3 2 33 33 H 1.08998 * 109.47334 * 149.99969 * 4 3 2 34 34 H 1.08991 * 109.47246 * 299.99687 * 5 4 3 35 35 H 1.08998 * 109.47111 * 59.99968 * 5 4 3 36 36 H 0.96997 * 120.00237 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00537 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.68784 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.68241 * 179.70636 * 19 18 17 40 40 H 1.09005 * 109.47130 * 269.95521 * 23 22 21 41 41 H 1.08999 * 109.47363 * 29.95527 * 23 22 21 42 42 H 1.09000 * 109.47200 * 149.95994 * 23 22 21 43 43 H 1.08002 * 120.07252 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1061 2.1272 -1.2578 5 6 3.4851 1.9101 -1.8843 6 7 3.5726 2.6556 -3.1424 7 6 4.7223 2.6127 -3.8851 8 1 5.5643 2.0289 -3.5436 9 6 4.8054 3.3195 -5.0769 10 7 3.7795 4.0314 -5.4928 11 14 6.3734 3.2603 -6.0904 12 1 6.2984 2.1321 -7.0530 13 1 6.5305 4.5360 -6.8342 14 1 7.5380 3.0659 -5.1897 15 6 2.3869 1.9656 1.1572 16 8 2.6921 3.1424 1.1737 17 6 2.4200 1.1771 2.4044 18 6 3.5201 1.2725 3.2682 19 6 3.5636 0.5472 4.4148 20 6 2.4964 -0.3090 4.7659 21 7 2.3517 -1.0957 5.8461 22 6 1.2825 -1.7940 5.9402 23 6 0.9735 -2.7212 7.0874 24 16 0.2506 -1.5419 4.6047 25 6 1.3967 -0.4042 3.9023 26 6 1.3594 0.3357 2.7272 27 1 -0.3634 -1.0137 0.1682 28 1 -0.3633 0.6527 0.7940 29 1 -0.3634 0.3614 -0.9621 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.3359 1.7747 -1.9438 33 1 1.9594 3.1892 -1.0614 34 1 4.2553 2.2625 -1.1984 35 1 3.6318 0.8481 -2.0807 36 1 2.8165 3.1802 -3.4489 37 1 3.8377 4.5256 -6.3254 38 1 4.3426 1.9257 3.0168 39 1 4.4206 0.6286 5.0670 40 1 1.3581 -3.7164 6.8639 41 1 1.4446 -2.3452 7.9956 42 1 -0.1056 -2.7729 7.2323 43 1 0.5094 0.2579 2.0654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320891315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:21 Heat of formation + Delta-G solvation = 46.291044 kcal Electronic energy + Delta-G solvation = -25400.087637 eV Core-core repulsion = 21765.705583 eV Total energy + Delta-G solvation = -3634.382054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.06990 -39.83943 -37.14930 -36.35885 -34.64775 -32.31799 -31.95142 -31.23913 -30.44134 -29.10630 -27.44667 -24.74916 -23.86193 -23.67454 -23.05453 -21.76981 -21.16127 -19.61052 -18.70340 -17.63919 -17.17471 -16.55139 -16.11293 -15.82799 -15.49494 -15.30938 -14.91258 -14.41223 -14.36745 -13.85128 -13.61964 -13.57157 -13.40069 -13.35797 -13.18247 -12.97422 -12.92257 -12.65749 -12.60284 -11.99147 -11.88136 -11.34334 -11.29372 -11.12827 -10.99519 -10.88679 -10.67958 -10.51456 -10.11521 -10.06565 -9.91508 -9.71449 -8.97340 -8.86961 -8.60287 -8.47436 -6.93070 -5.75521 -3.04888 -0.15853 0.78691 0.79543 1.27732 1.72992 2.68395 2.94081 3.38054 3.43539 3.44943 3.50055 3.52193 4.11812 4.28596 4.49821 4.61801 4.70771 4.78204 4.80256 4.89257 4.92334 4.98058 5.09058 5.23029 5.34952 5.35904 5.50790 5.52879 5.57303 5.64625 5.65306 5.76149 5.79093 5.92952 6.02190 6.02922 6.13056 6.24478 6.51918 6.72467 6.87634 7.19877 7.39321 7.70985 8.14021 8.42798 9.53836 10.09616 10.44749 11.47303 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.002273 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.465660 B =12313.099977 C =12746.654275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 N -0.598 5.598 4 C 0.107 3.893 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.557 3.443 16 O -0.520 6.520 17 C -0.101 4.101 18 C -0.057 4.057 19 C -0.069 4.069 20 C 0.099 3.901 21 N -0.470 5.470 22 C 0.093 3.907 23 C -0.084 4.084 24 S 0.104 5.896 25 C -0.191 4.191 26 C -0.052 4.052 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 -16.014 24.914 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 N -0.330 5.330 4 C -0.015 4.015 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.344 3.656 16 O -0.396 6.396 17 C -0.108 4.108 18 C -0.079 4.079 19 C -0.090 4.090 20 C -0.021 4.021 21 N -0.185 5.185 22 C -0.191 4.191 23 C -0.144 4.144 24 S 0.360 5.640 25 C -0.310 4.310 26 C -0.074 4.074 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.991 -15.898 25.049 31.639 hybrid contribution 1.317 0.631 -0.934 1.734 sum -9.674 -15.267 24.115 30.137 Atomic orbital electron populations 1.22372 0.95869 1.02326 1.03076 1.21868 0.94380 0.82867 1.04176 1.47848 1.63878 1.14174 1.07143 1.21756 0.99181 0.97645 0.82922 1.20904 0.93552 0.95269 0.88852 1.42199 1.16647 1.57635 1.20984 1.19200 0.92444 1.24352 1.00943 0.91190 1.24754 0.97848 1.00046 0.98362 1.69657 1.29954 1.35135 1.23407 0.86158 0.82752 0.76925 0.80168 1.21711 1.21716 1.20746 1.18134 0.77613 0.86828 0.83031 1.90855 1.47802 1.15212 1.85740 1.19950 0.96052 0.98327 0.96476 1.20753 0.97590 0.97318 0.92218 1.20305 0.96935 0.94748 0.96979 1.19303 0.95310 0.97912 0.89604 1.66143 1.21616 1.08197 1.22518 1.26826 0.92484 0.99399 1.00388 1.20592 1.03043 0.96993 0.93773 1.83950 1.22261 1.40569 1.17196 1.23689 0.99540 1.05823 1.01934 1.21056 0.99200 0.93069 0.94126 0.91100 0.92138 0.91218 0.89533 0.89731 0.90207 0.89354 0.95977 0.96347 0.78232 0.93478 0.83628 0.84051 0.88981 0.88856 0.89611 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.15 37.16 0.34 -1.15 16 2 C 0.09 0.94 5.59 -4.04 -0.02 0.92 16 3 N -0.60 -8.50 2.48 -174.89 -0.43 -8.93 16 4 C 0.11 1.83 5.58 -4.04 -0.02 1.80 16 5 C 0.14 3.01 6.58 -4.04 -0.03 2.98 16 6 N -0.73 -19.04 5.60 -59.91 -0.34 -19.38 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 11 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.56 8.63 7.26 -12.45 -0.09 8.54 16 16 O -0.52 -10.15 16.55 5.29 0.09 -10.06 16 17 C -0.10 -1.27 5.08 -105.00 -0.53 -1.81 16 18 C -0.06 -0.67 9.59 -39.74 -0.38 -1.05 16 19 C -0.07 -0.74 10.03 -39.33 -0.39 -1.13 16 20 C 0.10 1.14 7.00 -84.87 -0.59 0.55 16 21 N -0.47 -5.15 10.56 -8.96 -0.09 -5.25 16 22 C 0.09 0.77 7.29 -13.85 -0.10 0.67 16 23 C -0.08 -0.35 10.44 36.01 0.38 0.02 16 24 S 0.10 0.82 23.11 -107.50 -2.48 -1.67 16 25 C -0.19 -2.02 6.54 -38.61 -0.25 -2.27 16 26 C -0.05 -0.55 7.44 -38.98 -0.29 -0.84 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.51 6.32 -51.92 -0.33 0.18 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.08 0.81 5.10 -51.93 -0.26 0.54 16 32 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.09 1.68 7.35 -51.93 -0.38 1.29 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.15 1.37 3.70 -52.49 -0.19 1.17 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -35.23 370.87 -9.88 -45.11 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.67 Total: 4.98 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.24 Total: -0.28 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.14 Total: -61.43 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.48 Total: -1.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.23 -9.88 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320891315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.399 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds