Wall clock time and date at job start Tue Mar 31 2020 18:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47337 * 2 1 4 4 C 1.46506 * 120.00408 * 277.51586 * 3 2 1 5 5 C 1.53004 * 109.46762 * 269.99864 * 4 3 2 6 6 N 1.46499 * 109.46744 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99938 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99983 * 0.02562 * 7 6 5 9 9 C 1.38812 * 119.99916 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00363 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47320 * 89.99534 * 11 9 7 13 13 H 1.48494 * 109.47272 * 210.00134 * 11 9 7 14 14 H 1.48504 * 109.46884 * 329.99803 * 11 9 7 15 15 C 1.34777 * 119.99988 * 97.51280 * 3 2 1 16 16 O 1.21587 * 120.00216 * 185.76863 * 15 3 2 17 17 C 1.47589 * 120.00050 * 5.77030 * 15 3 2 18 18 C 1.40195 * 120.13029 * 134.19025 * 17 15 3 19 19 C 1.35747 * 120.61604 * 180.30030 * 18 17 15 20 20 C 1.41252 * 120.63498 * 359.44977 * 19 18 17 21 21 N 1.34414 * 129.48129 * 180.22982 * 20 19 18 22 22 C 1.28052 * 117.91363 * 180.29667 * 21 20 19 23 23 C 1.50702 * 124.23966 * 180.02562 * 22 21 20 24 24 S 1.70649 * 111.52068 * 359.97438 * 22 21 20 25 25 C 1.40147 * 118.74251 * 0.53746 * 20 19 18 26 26 C 1.38918 * 120.40808 * 359.74292 * 25 20 19 27 27 H 1.08995 * 109.47592 * 189.42100 * 1 2 3 28 28 H 1.09011 * 109.46804 * 309.42065 * 1 2 3 29 29 H 1.09004 * 109.47178 * 69.41181 * 1 2 3 30 30 H 1.09004 * 109.46662 * 240.00677 * 2 1 3 31 31 H 1.08994 * 109.47401 * 120.00156 * 2 1 3 32 32 H 1.09000 * 109.46974 * 29.99436 * 4 3 2 33 33 H 1.08998 * 109.47334 * 149.99969 * 4 3 2 34 34 H 1.08991 * 109.47246 * 299.99687 * 5 4 3 35 35 H 1.08998 * 109.47111 * 59.99968 * 5 4 3 36 36 H 0.96997 * 120.00237 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00537 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.68784 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.68241 * 179.70636 * 19 18 17 40 40 H 1.09005 * 109.47130 * 269.95521 * 23 22 21 41 41 H 1.08999 * 109.47363 * 29.95527 * 23 22 21 42 42 H 1.09000 * 109.47200 * 149.95994 * 23 22 21 43 43 H 1.08002 * 120.07252 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1061 2.1272 -1.2578 5 6 3.4851 1.9101 -1.8843 6 7 3.5726 2.6556 -3.1424 7 6 4.7223 2.6127 -3.8851 8 1 5.5643 2.0289 -3.5436 9 6 4.8054 3.3195 -5.0769 10 7 3.7795 4.0314 -5.4928 11 14 6.3734 3.2603 -6.0904 12 1 6.2984 2.1321 -7.0530 13 1 6.5305 4.5360 -6.8342 14 1 7.5380 3.0659 -5.1897 15 6 2.3869 1.9656 1.1572 16 8 2.6921 3.1424 1.1737 17 6 2.4200 1.1771 2.4044 18 6 3.5201 1.2725 3.2682 19 6 3.5636 0.5472 4.4148 20 6 2.4964 -0.3090 4.7659 21 7 2.3517 -1.0957 5.8461 22 6 1.2825 -1.7940 5.9402 23 6 0.9735 -2.7212 7.0874 24 16 0.2506 -1.5419 4.6047 25 6 1.3967 -0.4042 3.9023 26 6 1.3594 0.3357 2.7272 27 1 -0.3634 -1.0137 0.1682 28 1 -0.3633 0.6527 0.7940 29 1 -0.3634 0.3614 -0.9621 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.3359 1.7747 -1.9438 33 1 1.9594 3.1892 -1.0614 34 1 4.2553 2.2625 -1.1984 35 1 3.6318 0.8481 -2.0807 36 1 2.8165 3.1802 -3.4489 37 1 3.8377 4.5256 -6.3254 38 1 4.3426 1.9257 3.0168 39 1 4.4206 0.6286 5.0670 40 1 1.3581 -3.7164 6.8639 41 1 1.4446 -2.3452 7.9956 42 1 -0.1056 -2.7729 7.2323 43 1 0.5094 0.2579 2.0654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320891315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:20 Heat of formation + Delta-G solvation = 23.452452 kcal Electronic energy + Delta-G solvation = -25401.077993 eV Core-core repulsion = 21765.705583 eV Total energy + Delta-G solvation = -3635.372410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98859 -40.85007 -38.03684 -37.66165 -36.43471 -33.81357 -32.67780 -32.48160 -31.55735 -30.09788 -28.82189 -26.03181 -25.17557 -24.54472 -24.12922 -23.27367 -22.03509 -20.70268 -19.50237 -19.23904 -18.60796 -17.69127 -17.03274 -16.83332 -16.72889 -16.20547 -16.07750 -15.78070 -15.58526 -15.25770 -15.04051 -14.80451 -14.35420 -14.34464 -14.14788 -14.01864 -13.73689 -13.56795 -13.14205 -13.10183 -12.93797 -12.83822 -12.71609 -12.56924 -12.33140 -12.15108 -12.10525 -11.90641 -11.87043 -11.28143 -11.14690 -10.99106 -10.72716 -9.90495 -9.71520 -9.21190 -9.08200 -7.98948 -5.29837 -0.94527 -0.03526 0.11724 0.57975 0.90325 1.45281 1.48228 1.54771 1.57608 1.84260 2.49731 2.54431 2.79830 3.21315 3.34256 3.44488 3.82720 3.90495 3.94828 4.03542 4.05110 4.13132 4.16326 4.23763 4.33568 4.47159 4.52501 4.56946 4.63339 4.67340 4.80466 4.82976 4.85018 4.91844 5.01118 5.04319 5.12961 5.15607 5.31447 5.38555 5.42870 5.48447 6.22133 6.23609 6.50136 6.94420 7.28710 7.99758 8.25563 9.24231 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.002273 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.465660 B =12313.099977 C =12746.654275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.594 5.594 4 C 0.122 3.878 5 C 0.148 3.852 6 N -0.742 5.742 7 C -0.251 4.251 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.978 3.022 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.556 3.444 16 O -0.573 6.573 17 C -0.122 4.122 18 C -0.064 4.064 19 C -0.073 4.073 20 C 0.091 3.909 21 N -0.504 5.504 22 C 0.096 3.904 23 C -0.086 4.086 24 S 0.158 5.842 25 C -0.215 4.215 26 C -0.037 4.037 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.000 1.000 35 H 0.031 0.969 36 H 0.376 0.624 37 H 0.254 0.746 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 -18.893 26.213 34.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.037 4.037 3 N -0.325 5.325 4 C -0.001 4.001 5 C 0.021 3.979 6 N -0.385 5.385 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.806 3.194 12 H -0.208 1.208 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.345 3.655 16 O -0.453 6.453 17 C -0.129 4.129 18 C -0.086 4.086 19 C -0.093 4.093 20 C -0.030 4.030 21 N -0.220 5.220 22 C -0.187 4.187 23 C -0.146 4.146 24 S 0.415 5.585 25 C -0.333 4.333 26 C -0.059 4.059 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.018 0.982 35 H 0.049 0.951 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.126 -18.849 26.378 34.614 hybrid contribution 1.578 1.379 -1.177 2.404 sum -10.548 -17.470 25.202 32.428 Atomic orbital electron populations 1.22354 0.93813 1.04165 1.02875 1.22167 0.96031 0.80508 1.04992 1.47908 1.63418 1.15442 1.05721 1.21384 0.97278 0.97023 0.84393 1.20948 0.95359 0.94900 0.86727 1.42368 1.15794 1.58080 1.22282 1.19575 0.93294 1.24043 1.01344 0.90915 1.25629 1.01211 1.00055 0.99694 1.69811 1.31960 1.36105 1.23781 0.85080 0.79027 0.76779 0.78479 1.20768 1.21945 1.19745 1.18614 0.76382 0.86402 0.84115 1.90816 1.50215 1.17552 1.86668 1.19693 0.97687 0.99845 0.95683 1.20742 0.97496 0.97704 0.92661 1.20407 0.97593 0.94589 0.96750 1.19560 0.95586 0.97822 0.90046 1.66227 1.23264 1.09638 1.22852 1.27633 0.91592 0.98293 1.01178 1.20845 1.04793 0.96728 0.92271 1.83756 1.20347 1.38514 1.15870 1.23946 1.00651 1.06836 1.01916 1.21109 0.98634 0.91853 0.94267 0.88135 0.92142 0.91684 0.89117 0.88525 0.88193 0.91699 0.98154 0.95106 0.79158 0.93768 0.84163 0.82693 0.87243 0.88575 0.87165 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.15 71.98 0.66 -1.83 16 2 C 0.08 1.63 5.59 86.38 0.48 2.12 16 3 N -0.59 -16.96 2.48 -825.50 -2.04 -19.00 16 4 C 0.12 4.27 5.58 86.38 0.48 4.75 16 5 C 0.15 6.40 6.58 86.38 0.57 6.96 16 6 N -0.74 -39.58 5.60 -343.46 -1.92 -41.51 16 7 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 10 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 11 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 15 C 0.56 17.85 7.26 86.71 0.63 18.48 16 16 O -0.57 -23.77 16.55 -3.99 -0.07 -23.83 16 17 C -0.12 -3.12 5.08 -20.11 -0.10 -3.22 16 18 C -0.06 -1.55 9.59 22.17 0.21 -1.34 16 19 C -0.07 -1.56 10.03 22.43 0.23 -1.34 16 20 C 0.09 2.00 7.00 39.95 0.28 2.28 16 21 N -0.50 -10.23 10.56 -182.19 -1.92 -12.15 16 22 C 0.10 1.32 7.29 88.66 0.65 1.97 16 23 C -0.09 -0.43 10.44 71.24 0.74 0.31 16 24 S 0.16 1.99 23.11 -56.49 -1.31 0.68 16 25 C -0.21 -4.16 6.54 22.90 0.15 -4.01 16 26 C -0.04 -0.73 7.44 22.66 0.17 -0.57 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.88 6.32 -2.38 -0.02 0.87 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.09 1.71 8.13 -2.39 -0.02 1.69 16 31 H 0.10 1.67 5.10 -2.39 -0.01 1.66 16 32 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 33 H 0.06 2.59 7.35 -2.39 -0.02 2.57 16 34 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.38 20.96 7.67 -92.71 -0.71 20.25 16 37 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.17 2.67 3.70 -2.91 -0.01 2.66 16 Total: -1.00 -77.89 370.87 1.84 -76.05 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.34 Total: 23.53 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.45 Total: 6.96 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -5.61 Total: -132.50 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.07 Total: -23.83 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.31 Total: 0.68 kcal Total: -77.89 1.84 -76.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320891315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.506 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds