Wall clock time and date at job start Tue Mar 31 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34780 * 125.64703 * 178.90388 * 5 4 2 7 7 O 1.21721 * 119.99877 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00017 * 0.02562 * 6 5 4 9 9 C 1.36110 * 125.71416 * 179.71306 * 8 6 5 10 10 C 1.42223 * 107.63047 * 179.88348 * 9 8 6 11 11 C 1.45595 * 140.78138 * 180.02562 * 10 9 8 12 12 C 1.31810 * 114.63020 * 180.32919 * 11 10 9 13 13 S 1.75349 * 111.24691 * 359.97438 * 12 11 10 14 14 C 1.38175 * 106.99413 * 0.38696 * 10 9 8 15 15 N 1.37468 * 108.16597 * 359.76220 * 14 10 9 16 16 H 0.97001 * 125.68075 * 179.97438 * 15 14 10 17 17 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 18 18 C 1.54907 * 104.83364 * 24.12527 * 17 5 4 19 19 H 1.09006 * 111.00095 * 81.06690 * 18 17 5 20 20 C 1.53003 * 111.00736 * 204.91764 * 18 17 5 21 21 N 1.46499 * 109.47113 * 287.19974 * 20 18 17 22 22 C 1.36937 * 119.99908 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00168 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99763 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00202 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99770 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47565 * 89.99990 * 26 24 22 28 28 H 1.48504 * 109.47213 * 209.99872 * 26 24 22 29 29 H 1.48503 * 109.47367 * 329.99775 * 26 24 22 30 30 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 31 31 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 32 32 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 33 33 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 34 34 H 1.08996 * 109.88624 * 336.75149 * 4 2 1 35 35 H 1.08009 * 126.18327 * 0.02858 * 9 8 6 36 36 H 1.07999 * 122.68252 * 0.32444 * 11 10 9 37 37 H 1.08003 * 124.37281 * 179.97438 * 12 11 10 38 38 H 1.08996 * 110.37128 * 142.96688 * 17 5 4 39 39 H 1.09006 * 110.36684 * 265.17859 * 17 5 4 40 40 H 1.09001 * 109.47012 * 47.19563 * 20 18 17 41 41 H 1.08997 * 109.47140 * 167.19819 * 20 18 17 42 42 H 0.96999 * 120.00147 * 359.97438 * 21 20 18 43 43 H 0.96995 * 119.99823 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8863 -3.1449 1.4946 7 8 3.0912 -4.2386 1.0010 8 6 3.1990 -2.9081 2.9060 9 6 3.7146 -3.8245 3.7702 10 6 3.8676 -3.1877 5.0327 11 6 4.3238 -3.4639 6.3875 12 6 4.2334 -2.4430 7.2164 13 16 3.5759 -1.0293 6.4140 14 6 3.4228 -1.8878 4.8858 15 7 3.0144 -1.7190 3.5841 16 1 2.6558 -0.9013 3.2052 17 6 2.0126 -2.2521 -0.6838 18 6 2.0789 -0.7975 -1.2125 19 1 3.1061 -0.5098 -1.4367 20 6 1.1814 -0.6182 -2.4386 21 7 1.7912 -1.2848 -3.5918 22 6 1.1636 -1.2585 -4.8086 23 1 0.2193 -0.7460 -4.9182 24 6 1.7416 -1.8897 -5.9015 25 7 2.8932 -2.5130 -5.7683 26 14 0.8858 -1.8533 -7.5614 27 1 1.3370 -0.6623 -8.3251 28 1 1.2238 -3.0846 -8.3197 29 1 -0.5838 -1.7841 -7.3594 30 1 -0.3633 0.4873 0.9048 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 2.9869 -0.3181 1.5780 34 1 1.3264 -0.8221 1.9991 35 1 3.9647 -4.8494 3.5385 36 1 4.7055 -4.4281 6.6891 37 1 4.5265 -2.4735 8.2554 38 1 2.7293 -2.8808 -1.2121 39 1 1.0046 -2.6520 -0.7941 40 1 0.2036 -1.0571 -2.2404 41 1 1.0662 0.4444 -2.6521 42 1 2.6395 -1.7447 -3.4935 43 1 3.2969 -2.9543 -6.5319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325545571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:03 Heat of formation + Delta-G solvation = 58.109125 kcal Electronic energy + Delta-G solvation = -25697.791467 eV Core-core repulsion = 22063.921884 eV Total energy + Delta-G solvation = -3633.869584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.68226 -39.92836 -37.99880 -35.68990 -34.74471 -32.96469 -31.29318 -30.75776 -29.67991 -28.39094 -26.91490 -25.62274 -23.86031 -23.18885 -22.23375 -21.62758 -20.39454 -19.62993 -19.37281 -18.49444 -17.19807 -16.76867 -16.24055 -15.68412 -15.43402 -15.18129 -14.85185 -14.76264 -14.48810 -14.04839 -13.79024 -13.60835 -13.37485 -13.17094 -12.94194 -12.66133 -12.52129 -12.38064 -12.14658 -11.95041 -11.91462 -11.70101 -11.13871 -11.09105 -10.87475 -10.65131 -10.52460 -10.44605 -10.18427 -10.02688 -9.77086 -9.71074 -8.89946 -8.79214 -8.56805 -7.94851 -6.95451 -5.77734 -3.07495 0.76877 1.03721 1.15557 1.67482 2.62052 2.70089 2.93835 3.25078 3.42846 3.47783 3.49988 4.14448 4.28185 4.48373 4.51823 4.62157 4.65110 4.75997 4.98236 5.13876 5.15677 5.25295 5.32798 5.38301 5.46266 5.56477 5.64834 5.69644 5.81098 5.82407 5.90154 5.94629 6.04933 6.09616 6.13411 6.22087 6.29408 6.36365 6.45423 6.62143 6.75149 6.85493 7.34992 7.67780 7.99443 8.40293 9.51592 10.07931 10.41953 11.44859 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.002295 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.584510 B =12197.390172 C =12953.943583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.090 3.910 5 N -0.615 5.615 6 C 0.598 3.402 7 O -0.517 6.517 8 C 0.000 4.000 9 C -0.070 4.070 10 C -0.163 4.163 11 C -0.068 4.068 12 C -0.223 4.223 13 S 0.128 5.872 14 C -0.014 4.014 15 N -0.529 5.529 16 H 0.421 0.579 17 C 0.118 3.882 18 C -0.101 4.101 19 H 0.087 0.913 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.384 0.616 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 5.229 27.970 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.111 0.889 4 C -0.033 4.033 5 N -0.349 5.349 6 C 0.387 3.613 7 O -0.393 6.393 8 C -0.113 4.113 9 C -0.098 4.098 10 C -0.175 4.175 11 C -0.098 4.098 12 C -0.357 4.357 13 S 0.381 5.619 14 C -0.243 4.243 15 N -0.137 5.137 16 H 0.265 0.735 17 C -0.004 4.004 18 C -0.121 4.121 19 H 0.106 0.894 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.003 6.121 27.951 28.613 hybrid contribution 0.055 -1.060 -1.453 1.799 sum 0.052 5.061 26.498 26.977 Atomic orbital electron populations 1.21865 0.93689 1.02661 1.02108 1.22178 0.96901 0.99119 0.93101 0.88923 1.22356 0.99259 0.83312 0.98410 1.48456 1.62914 1.10869 1.12634 1.16588 0.77691 0.83744 0.83291 1.90910 1.53442 1.22986 1.71951 1.20061 1.11736 0.86357 0.93132 1.20747 1.00510 0.99305 0.89249 1.19398 1.09985 0.93041 0.95116 1.20348 0.99695 0.99804 0.89989 1.24856 1.10843 0.96124 1.03867 1.83896 1.69402 1.12926 0.95626 1.23624 1.09212 1.00162 0.91274 1.42196 1.52579 1.12734 1.06203 0.73464 1.22405 1.01729 0.98062 0.78158 1.22644 1.01377 0.93263 0.94801 0.89442 1.20626 0.94102 0.96045 0.85408 1.42378 1.25639 1.64470 1.05275 1.19186 1.03067 1.28532 0.86563 0.91169 1.24759 0.97294 1.00661 0.98175 1.69657 1.18059 1.39883 1.30322 0.86191 0.78707 0.77018 0.84254 1.21734 1.21738 1.20759 0.92866 0.91033 0.92139 0.91619 0.91436 0.82440 0.83695 0.81248 0.89389 0.90674 0.95622 0.95804 0.78234 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.91 37.16 0.29 -1.18 16 2 C -0.09 -0.99 3.47 -88.78 -0.31 -1.30 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.09 0.89 4.67 -3.06 -0.01 0.88 16 5 N -0.61 -8.47 3.33 -172.13 -0.57 -9.04 16 6 C 0.60 9.22 7.81 -12.93 -0.10 9.12 16 7 O -0.52 -9.88 17.10 5.17 0.09 -9.79 16 8 C 0.00 0.00 6.82 -82.47 -0.56 -0.56 16 9 C -0.07 -0.88 10.58 -38.82 -0.41 -1.29 16 10 C -0.16 -1.82 6.80 -105.46 -0.72 -2.54 16 11 C -0.07 -0.58 10.42 -38.54 -0.40 -0.98 16 12 C -0.22 -1.59 11.03 28.84 0.32 -1.27 16 13 S 0.13 1.00 23.24 -107.50 -2.50 -1.50 16 14 C -0.01 -0.14 8.41 -15.05 -0.13 -0.27 16 15 N -0.53 -5.53 5.69 -7.94 -0.05 -5.58 16 16 H 0.42 3.47 4.83 -40.82 -0.20 3.27 16 17 C 0.12 1.87 6.00 -2.53 -0.02 1.86 16 18 C -0.10 -1.50 2.91 -88.47 -0.26 -1.76 16 19 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.17 3.07 4.54 -4.04 -0.02 3.05 16 21 N -0.73 -18.01 5.55 -59.91 -0.33 -18.35 16 22 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 26 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 32 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 33 H 0.07 0.55 7.07 -51.93 -0.37 0.19 16 34 H 0.07 0.56 6.91 -51.93 -0.36 0.20 16 35 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 38 H 0.09 1.65 8.04 -51.93 -0.42 1.23 16 39 H 0.08 1.24 7.49 -51.93 -0.39 0.85 16 40 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 41 H 0.02 0.44 8.05 -51.93 -0.42 0.03 16 42 H 0.38 10.06 7.67 -40.82 -0.31 9.74 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -33.43 361.92 -10.43 -43.86 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.65 Total: 8.62 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.57 Total: -3.51 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.23 Total: -60.48 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.43 -10.43 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325545571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.971 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds