Wall clock time and date at job start Tue Mar 31 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34780 * 125.64703 * 178.90388 * 5 4 2 7 7 O 1.21721 * 119.99877 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00017 * 0.02562 * 6 5 4 9 9 C 1.36110 * 125.71416 * 179.71306 * 8 6 5 10 10 C 1.42223 * 107.63047 * 179.88348 * 9 8 6 11 11 C 1.45595 * 140.78138 * 180.02562 * 10 9 8 12 12 C 1.31810 * 114.63020 * 180.32919 * 11 10 9 13 13 S 1.75349 * 111.24691 * 359.97438 * 12 11 10 14 14 C 1.38175 * 106.99413 * 0.38696 * 10 9 8 15 15 N 1.37468 * 108.16597 * 359.76220 * 14 10 9 16 16 H 0.97001 * 125.68075 * 179.97438 * 15 14 10 17 17 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 18 18 C 1.54907 * 104.83364 * 24.12527 * 17 5 4 19 19 H 1.09006 * 111.00095 * 81.06690 * 18 17 5 20 20 C 1.53003 * 111.00736 * 204.91764 * 18 17 5 21 21 N 1.46499 * 109.47113 * 287.19974 * 20 18 17 22 22 C 1.36937 * 119.99908 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00168 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99763 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00202 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99770 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47565 * 89.99990 * 26 24 22 28 28 H 1.48504 * 109.47213 * 209.99872 * 26 24 22 29 29 H 1.48503 * 109.47367 * 329.99775 * 26 24 22 30 30 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 31 31 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 32 32 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 33 33 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 34 34 H 1.08996 * 109.88624 * 336.75149 * 4 2 1 35 35 H 1.08009 * 126.18327 * 0.02858 * 9 8 6 36 36 H 1.07999 * 122.68252 * 0.32444 * 11 10 9 37 37 H 1.08003 * 124.37281 * 179.97438 * 12 11 10 38 38 H 1.08996 * 110.37128 * 142.96688 * 17 5 4 39 39 H 1.09006 * 110.36684 * 265.17859 * 17 5 4 40 40 H 1.09001 * 109.47012 * 47.19563 * 20 18 17 41 41 H 1.08997 * 109.47140 * 167.19819 * 20 18 17 42 42 H 0.96999 * 120.00147 * 359.97438 * 21 20 18 43 43 H 0.96995 * 119.99823 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8863 -3.1449 1.4946 7 8 3.0912 -4.2386 1.0010 8 6 3.1990 -2.9081 2.9060 9 6 3.7146 -3.8245 3.7702 10 6 3.8676 -3.1877 5.0327 11 6 4.3238 -3.4639 6.3875 12 6 4.2334 -2.4430 7.2164 13 16 3.5759 -1.0293 6.4140 14 6 3.4228 -1.8878 4.8858 15 7 3.0144 -1.7190 3.5841 16 1 2.6558 -0.9013 3.2052 17 6 2.0126 -2.2521 -0.6838 18 6 2.0789 -0.7975 -1.2125 19 1 3.1061 -0.5098 -1.4367 20 6 1.1814 -0.6182 -2.4386 21 7 1.7912 -1.2848 -3.5918 22 6 1.1636 -1.2585 -4.8086 23 1 0.2193 -0.7460 -4.9182 24 6 1.7416 -1.8897 -5.9015 25 7 2.8932 -2.5130 -5.7683 26 14 0.8858 -1.8533 -7.5614 27 1 1.3370 -0.6623 -8.3251 28 1 1.2238 -3.0846 -8.3197 29 1 -0.5838 -1.7841 -7.3594 30 1 -0.3633 0.4873 0.9048 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 2.9869 -0.3181 1.5780 34 1 1.3264 -0.8221 1.9991 35 1 3.9647 -4.8494 3.5385 36 1 4.7055 -4.4281 6.6891 37 1 4.5265 -2.4735 8.2554 38 1 2.7293 -2.8808 -1.2121 39 1 1.0046 -2.6520 -0.7941 40 1 0.2036 -1.0571 -2.2404 41 1 1.0662 0.4444 -2.6521 42 1 2.6395 -1.7447 -3.4935 43 1 3.2969 -2.9543 -6.5319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325545571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:02 Heat of formation + Delta-G solvation = 36.321965 kcal Electronic energy + Delta-G solvation = -25698.736229 eV Core-core repulsion = 22063.921884 eV Total energy + Delta-G solvation = -3634.814346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58906 -40.99667 -39.22532 -36.64045 -36.24577 -34.36053 -32.90514 -31.66861 -30.97487 -29.48129 -27.82213 -27.14753 -25.30379 -24.16656 -23.49390 -22.67504 -21.31847 -20.65721 -20.37774 -19.55004 -18.89167 -17.94310 -17.42058 -16.78799 -16.68412 -16.29339 -15.93459 -15.57389 -15.50289 -15.38924 -15.22469 -14.82549 -14.58787 -14.43679 -14.11874 -13.83821 -13.69189 -13.48789 -13.15689 -13.02225 -12.84441 -12.79849 -12.67012 -12.63040 -12.18983 -11.91937 -11.76942 -11.75151 -11.61886 -11.54238 -11.38061 -10.93019 -10.61066 -9.94657 -9.31279 -9.00555 -8.65436 -7.95571 -5.24760 0.06492 0.12363 0.41163 1.06243 1.46340 1.48377 1.56732 1.61911 1.75606 2.10172 2.23799 2.55197 3.16416 3.33615 3.38405 3.54138 3.73612 3.77164 3.97847 3.99192 4.10465 4.18128 4.30885 4.39090 4.47407 4.52880 4.61542 4.68397 4.75305 4.77536 4.78633 4.92838 4.97982 5.10708 5.16127 5.18944 5.23856 5.28634 5.41070 5.45382 5.49626 5.61529 6.08972 6.24415 6.26259 6.81473 7.32236 8.08632 8.29642 9.28137 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.002295 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.584510 B =12197.390172 C =12953.943583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.123 0.877 4 C 0.086 3.914 5 N -0.612 5.612 6 C 0.594 3.406 7 O -0.571 6.571 8 C -0.016 4.016 9 C -0.081 4.081 10 C -0.182 4.182 11 C -0.088 4.088 12 C -0.211 4.211 13 S 0.166 5.834 14 C -0.023 4.023 15 N -0.519 5.519 16 H 0.431 0.569 17 C 0.122 3.878 18 C -0.094 4.094 19 H 0.078 0.922 20 C 0.167 3.833 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.267 1.267 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.203 0.797 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.371 0.629 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 7.922 30.998 32.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.141 0.859 4 C -0.036 4.036 5 N -0.344 5.344 6 C 0.385 3.615 7 O -0.450 6.450 8 C -0.129 4.129 9 C -0.110 4.110 10 C -0.195 4.195 11 C -0.118 4.118 12 C -0.344 4.344 13 S 0.419 5.581 14 C -0.252 4.252 15 N -0.129 5.129 16 H 0.277 0.723 17 C 0.000 4.000 18 C -0.114 4.114 19 H 0.097 0.903 20 C 0.041 3.959 21 N -0.391 5.391 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.192 1.192 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.202 0.798 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.025 8.899 31.021 32.289 hybrid contribution 0.343 -1.846 -2.209 2.899 sum -0.682 7.053 28.812 29.671 Atomic orbital electron populations 1.21882 0.93006 1.01910 1.03523 1.22202 0.97347 0.99870 0.90443 0.85910 1.22658 1.01213 0.80889 0.98812 1.48455 1.62150 1.12325 1.11506 1.16963 0.77037 0.83233 0.84289 1.90868 1.55825 1.25125 1.73206 1.19597 1.13599 0.87849 0.91875 1.20900 1.00421 0.99348 0.90300 1.19718 1.10582 0.93426 0.95734 1.20539 1.00894 1.01359 0.88977 1.25333 1.08804 0.95198 1.05086 1.83862 1.68605 1.12343 0.93246 1.24117 1.08348 1.00789 0.91921 1.42012 1.52479 1.12213 1.06161 0.72284 1.22143 0.99903 0.98353 0.79610 1.22466 1.00447 0.93279 0.95163 0.90338 1.20785 0.94530 0.95737 0.84886 1.42650 1.25301 1.64843 1.06336 1.19644 1.03050 1.27041 0.87627 0.90214 1.25616 0.98273 1.01321 1.01978 1.69831 1.19897 1.41619 1.30927 0.85127 0.78303 0.76497 0.79761 1.21237 1.22577 1.19217 0.89644 0.91604 0.93857 0.89290 0.88745 0.82957 0.81996 0.77991 0.93400 0.91666 0.95247 0.94623 0.79765 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.91 71.98 0.57 -1.96 16 2 C -0.08 -1.47 3.47 -9.60 -0.03 -1.50 16 3 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.09 1.51 4.67 86.73 0.41 1.91 16 5 N -0.61 -17.12 3.33 -816.69 -2.72 -19.84 16 6 C 0.59 19.19 7.81 86.39 0.68 19.87 16 7 O -0.57 -23.61 17.10 -4.41 -0.08 -23.68 16 8 C -0.02 -0.42 6.82 39.81 0.27 -0.15 16 9 C -0.08 -2.08 10.58 22.76 0.24 -1.83 16 10 C -0.18 -3.86 6.80 -20.41 -0.14 -4.00 16 11 C -0.09 -1.30 10.42 23.39 0.24 -1.05 16 12 C -0.21 -2.24 11.03 67.05 0.74 -1.50 16 13 S 0.17 2.02 23.24 -56.49 -1.31 0.71 16 14 C -0.02 -0.43 8.41 83.79 0.70 0.28 16 15 N -0.52 -9.97 5.69 -179.04 -1.02 -10.99 16 16 H 0.43 5.89 4.83 -92.71 -0.45 5.44 16 17 C 0.12 4.12 6.00 86.86 0.52 4.64 16 18 C -0.09 -2.77 2.91 -9.40 -0.03 -2.80 16 19 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 20 C 0.17 6.16 4.54 86.38 0.39 6.55 16 21 N -0.75 -37.72 5.55 -343.45 -1.91 -39.63 16 22 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 23 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 24 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 25 N -0.97 -60.99 13.06 21.65 0.28 -60.70 16 26 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.24 7.12 -2.39 -0.02 1.22 16 32 H 0.04 0.91 7.35 -2.39 -0.02 0.89 16 33 H 0.09 1.21 7.07 -2.39 -0.02 1.19 16 34 H 0.09 1.22 6.91 -2.39 -0.02 1.20 16 35 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 39 H 0.07 2.29 7.49 -2.38 -0.02 2.27 16 40 H 0.03 1.09 6.94 -2.39 -0.02 1.07 16 41 H 0.04 1.27 8.05 -2.39 -0.02 1.25 16 42 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 43 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -76.54 361.92 1.05 -75.49 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.10 Total: 28.35 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.87 Total: 1.64 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.36 Total: -131.16 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.08 Total: -23.68 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.31 Total: 0.71 kcal Total: -76.54 1.05 -75.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325545571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.810 kcal (2) G-P(sol) polarization free energy of solvation -76.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds