Wall clock time and date at job start Tue Mar 31 2020 18:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.79917 * 2 1 4 4 C 1.55110 * 110.82759 * 123.33619 * 2 1 3 5 5 N 1.48121 * 103.30993 * 155.60093 * 4 2 1 6 6 C 1.34780 * 127.03239 * 140.80081 * 5 4 2 7 7 O 1.21722 * 119.99961 * 354.32475 * 6 5 4 8 8 C 1.46490 * 120.00032 * 174.33194 * 6 5 4 9 9 C 1.36109 * 125.71208 * 172.95699 * 8 6 5 10 10 C 1.42226 * 107.62875 * 179.84836 * 9 8 6 11 11 C 1.45597 * 140.78386 * 180.02562 * 10 9 8 12 12 C 1.31811 * 114.63335 * 180.37783 * 11 10 9 13 13 S 1.75348 * 111.24831 * 359.97438 * 12 11 10 14 14 C 1.38178 * 106.99346 * 0.40905 * 10 9 8 15 15 N 1.37460 * 108.16774 * 359.75312 * 14 10 9 16 16 H 0.96998 * 125.68850 * 179.97438 * 15 14 10 17 17 C 1.47479 * 105.93514 * 320.76136 * 5 4 2 18 18 C 1.54003 * 107.08342 * 25.44787 * 17 5 4 19 19 H 1.08993 * 110.33013 * 239.69661 * 18 17 5 20 20 C 1.53003 * 110.32800 * 117.58600 * 18 17 5 21 21 N 1.46501 * 109.47038 * 67.83777 * 20 18 17 22 22 C 1.36937 * 119.99882 * 180.27672 * 21 20 18 23 23 H 1.08002 * 119.99712 * 359.72578 * 22 21 20 24 24 C 1.38806 * 120.00018 * 179.72094 * 22 21 20 25 25 N 1.31615 * 120.00244 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99993 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47049 * 60.00501 * 26 24 22 28 28 H 1.48497 * 109.46993 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47439 * 300.00261 * 26 24 22 30 30 H 1.09004 * 109.47132 * 183.28935 * 1 2 3 31 31 H 1.09003 * 109.46989 * 303.28269 * 1 2 3 32 32 H 1.09003 * 109.47437 * 63.29131 * 1 2 3 33 33 H 1.08994 * 110.59172 * 37.16493 * 4 2 1 34 34 H 1.09004 * 110.82333 * 274.14752 * 4 2 1 35 35 H 1.07998 * 126.18983 * 359.96583 * 9 8 6 36 36 H 1.08000 * 122.67781 * 0.35013 * 11 10 9 37 37 H 1.08001 * 124.37291 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.91329 * 266.08869 * 17 5 4 39 39 H 1.09002 * 109.91572 * 144.80699 * 17 5 4 40 40 H 1.09003 * 109.46913 * 307.83556 * 20 18 17 41 41 H 1.09002 * 109.47095 * 187.83666 * 20 18 17 42 42 H 0.96992 * 119.99716 * 359.97438 * 21 20 18 43 43 H 0.97001 * 120.00515 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0815 -0.7967 1.2112 5 7 3.4297 -1.2128 0.7603 6 6 4.5562 -1.2533 1.4992 7 8 4.5516 -0.8278 2.6396 8 6 5.7861 -1.8092 0.9298 9 6 7.0143 -1.7855 1.5158 10 6 7.9246 -2.4316 0.6344 11 6 9.3308 -2.7948 0.5326 12 6 9.6577 -3.4196 -0.5810 13 16 8.2645 -3.6283 -1.6251 14 6 7.2024 -2.8217 -0.4772 15 7 5.8946 -2.4399 -0.2943 16 1 5.1689 -2.5883 -0.9205 17 6 3.2871 -1.5748 -0.6622 18 6 2.0775 -0.7937 -1.2087 19 1 1.3204 -1.4821 -1.5840 20 6 2.5199 0.1640 -2.3170 21 7 2.9551 -0.6074 -3.4839 22 6 3.4030 0.0400 -4.6044 23 1 3.4312 1.1194 -4.6294 24 6 3.8208 -0.6909 -5.7080 25 7 3.7861 -2.0063 -5.6777 26 14 4.4311 0.1923 -7.2367 27 1 5.6113 1.0242 -6.8898 28 1 4.8147 -0.8072 -8.2658 29 1 3.3519 1.0619 -7.7700 30 1 -0.3633 -1.0260 0.0590 31 1 -0.3633 0.5640 0.8591 32 1 -0.3634 0.4619 -0.9180 33 1 1.4579 -1.6674 1.4133 34 1 2.1504 -0.1612 2.0941 35 1 7.2541 -1.3557 2.4771 36 1 10.0487 -2.5697 1.3074 37 1 10.6549 -3.7591 -0.8196 38 1 3.1106 -2.6462 -0.7568 39 1 4.1876 -1.2945 -1.2087 40 1 3.3462 0.7778 -1.9583 41 1 1.6849 0.8063 -2.5968 42 1 2.9302 -1.5768 -3.4613 43 1 4.0784 -2.5171 -6.4487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325545572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:08 Heat of formation + Delta-G solvation = 55.108406 kcal Electronic energy + Delta-G solvation = -26298.546584 eV Core-core repulsion = 22664.546879 eV Total energy + Delta-G solvation = -3633.999705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41431 -39.74612 -37.89495 -35.37090 -34.71242 -33.07146 -31.56774 -30.47167 -29.14666 -28.83557 -26.40382 -25.71546 -23.67045 -22.95829 -22.30075 -20.98329 -20.15000 -20.09534 -19.29686 -18.30340 -17.27129 -16.60809 -16.21746 -15.60750 -15.10610 -14.94829 -14.68809 -14.55747 -14.38250 -13.98199 -13.66762 -13.48016 -13.42152 -12.97236 -12.85955 -12.76237 -12.62786 -12.18139 -11.89165 -11.85031 -11.62775 -11.51221 -11.16618 -10.96682 -10.76937 -10.71874 -10.60365 -10.47272 -10.16760 -10.10671 -9.76276 -9.49328 -8.98829 -8.78997 -8.26833 -7.63444 -7.05862 -5.87576 -3.17056 1.13675 1.32920 1.38806 2.04865 2.77833 2.84412 3.21574 3.38395 3.39195 3.43418 3.43809 4.26907 4.47473 4.55774 4.65427 4.79610 4.81292 4.99620 5.13106 5.28966 5.37848 5.41087 5.46108 5.48933 5.57985 5.58297 5.66602 5.68621 5.72927 5.83581 5.97004 6.00475 6.08602 6.09455 6.17172 6.24260 6.33110 6.43620 6.59235 6.70020 6.71840 7.17186 7.39974 7.60948 8.02266 8.30861 9.42690 9.96322 10.31348 11.35018 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.007301 B = 0.005142 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.959158 B = 5443.663104 C = 8822.870605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.111 3.889 5 N -0.620 5.620 6 C 0.610 3.390 7 O -0.532 6.532 8 C -0.008 4.008 9 C -0.071 4.071 10 C -0.168 4.168 11 C -0.073 4.073 12 C -0.227 4.227 13 S 0.146 5.854 14 C -0.002 4.002 15 N -0.522 5.522 16 H 0.427 0.573 17 C 0.090 3.910 18 C -0.099 4.099 19 H 0.091 0.909 20 C 0.160 3.840 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.169 0.831 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.382 0.618 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -2.966 13.705 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.011 4.011 5 N -0.353 5.353 6 C 0.400 3.600 7 O -0.409 6.409 8 C -0.121 4.121 9 C -0.099 4.099 10 C -0.180 4.180 11 C -0.104 4.104 12 C -0.361 4.361 13 S 0.401 5.599 14 C -0.233 4.233 15 N -0.129 5.129 16 H 0.271 0.729 17 C -0.033 4.033 18 C -0.119 4.119 19 H 0.109 0.891 20 C 0.032 3.968 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.038 0.962 41 H 0.044 0.956 42 H 0.215 0.785 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.895 -3.269 12.789 13.514 hybrid contribution 0.245 0.629 -0.115 0.685 sum 3.140 -2.640 12.675 13.322 Atomic orbital electron populations 1.21721 0.93586 1.02089 1.02284 1.22328 0.96235 0.99812 0.93556 0.89560 1.22614 0.81691 0.98785 0.98018 1.48700 1.08592 1.66169 1.11838 1.16542 0.80577 0.78270 0.84644 1.90839 1.83989 1.48572 1.17519 1.19884 0.95829 1.08147 0.88232 1.20644 0.88918 1.00792 0.99578 1.19373 0.93451 1.09082 0.96120 1.20261 0.93101 0.98944 0.98074 1.24921 1.02410 1.09741 0.98994 1.84292 0.96495 1.60854 1.18302 1.23674 0.89170 1.08418 1.01993 1.42202 1.07233 1.46769 1.16747 0.72899 1.22523 1.00970 0.99332 0.80511 1.22362 0.95962 0.97998 0.95562 0.89072 1.20745 0.96626 0.92851 0.86560 1.42347 1.78098 1.05530 1.11782 1.19155 1.35263 0.91287 0.91724 0.91228 1.24709 1.02008 0.95471 0.98378 1.69620 1.53605 1.04147 1.30823 0.86282 0.78733 0.78384 0.82888 1.21193 1.21583 1.21200 0.92383 0.92468 0.91674 0.90774 0.89566 0.82736 0.83995 0.81393 0.91336 0.89529 0.96162 0.95558 0.78476 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.17 37.16 0.34 -1.01 16 2 C -0.10 -1.17 3.22 -88.65 -0.29 -1.46 16 3 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 4 C 0.11 1.33 6.56 -2.03 -0.01 1.31 16 5 N -0.62 -8.79 3.29 -171.26 -0.56 -9.36 16 6 C 0.61 9.77 7.84 -12.93 -0.10 9.67 16 7 O -0.53 -9.59 17.05 5.17 0.09 -9.50 16 8 C -0.01 -0.12 6.77 -82.47 -0.56 -0.68 16 9 C -0.07 -1.04 10.59 -38.82 -0.41 -1.45 16 10 C -0.17 -2.42 6.80 -105.45 -0.72 -3.13 16 11 C -0.07 -0.85 10.42 -38.54 -0.40 -1.25 16 12 C -0.23 -2.47 11.03 28.84 0.32 -2.15 16 13 S 0.15 1.93 23.24 -107.50 -2.50 -0.57 16 14 C 0.00 -0.04 8.41 -15.05 -0.13 -0.16 16 15 N -0.52 -7.96 5.48 -7.94 -0.04 -8.00 16 16 H 0.43 6.30 5.39 -40.82 -0.22 6.08 16 17 C 0.09 1.28 4.74 -2.98 -0.01 1.26 16 18 C -0.10 -1.41 2.62 -89.24 -0.23 -1.65 16 19 H 0.09 1.28 7.85 -51.93 -0.41 0.87 16 20 C 0.16 2.96 5.32 -4.04 -0.02 2.93 16 21 N -0.73 -17.13 5.38 -59.90 -0.32 -17.45 16 22 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 26 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 34 H 0.09 1.04 7.81 -51.93 -0.41 0.64 16 35 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.07 0.89 7.91 -51.93 -0.41 0.47 16 39 H 0.09 1.42 5.61 -51.93 -0.29 1.13 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.38 9.20 7.56 -40.82 -0.31 8.89 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -31.32 366.36 -10.39 -41.71 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.79 Total: 11.70 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.47 Total: -4.79 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.21 Total: -60.91 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.50 Total: -0.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.32 -10.39 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325545572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.818 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds