Wall clock time and date at job start Tue Mar 31 2020 18:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.79917 * 2 1 4 4 C 1.55110 * 110.82759 * 123.33619 * 2 1 3 5 5 N 1.48121 * 103.30993 * 155.60093 * 4 2 1 6 6 C 1.34780 * 127.03239 * 140.80081 * 5 4 2 7 7 O 1.21722 * 119.99961 * 354.32475 * 6 5 4 8 8 C 1.46490 * 120.00032 * 174.33194 * 6 5 4 9 9 C 1.36109 * 125.71208 * 172.95699 * 8 6 5 10 10 C 1.42226 * 107.62875 * 179.84836 * 9 8 6 11 11 C 1.45597 * 140.78386 * 180.02562 * 10 9 8 12 12 C 1.31811 * 114.63335 * 180.37783 * 11 10 9 13 13 S 1.75348 * 111.24831 * 359.97438 * 12 11 10 14 14 C 1.38178 * 106.99346 * 0.40905 * 10 9 8 15 15 N 1.37460 * 108.16774 * 359.75312 * 14 10 9 16 16 H 0.96998 * 125.68850 * 179.97438 * 15 14 10 17 17 C 1.47479 * 105.93514 * 320.76136 * 5 4 2 18 18 C 1.54003 * 107.08342 * 25.44787 * 17 5 4 19 19 H 1.08993 * 110.33013 * 239.69661 * 18 17 5 20 20 C 1.53003 * 110.32800 * 117.58600 * 18 17 5 21 21 N 1.46501 * 109.47038 * 67.83777 * 20 18 17 22 22 C 1.36937 * 119.99882 * 180.27672 * 21 20 18 23 23 H 1.08002 * 119.99712 * 359.72578 * 22 21 20 24 24 C 1.38806 * 120.00018 * 179.72094 * 22 21 20 25 25 N 1.31615 * 120.00244 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99993 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47049 * 60.00501 * 26 24 22 28 28 H 1.48497 * 109.46993 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47439 * 300.00261 * 26 24 22 30 30 H 1.09004 * 109.47132 * 183.28935 * 1 2 3 31 31 H 1.09003 * 109.46989 * 303.28269 * 1 2 3 32 32 H 1.09003 * 109.47437 * 63.29131 * 1 2 3 33 33 H 1.08994 * 110.59172 * 37.16493 * 4 2 1 34 34 H 1.09004 * 110.82333 * 274.14752 * 4 2 1 35 35 H 1.07998 * 126.18983 * 359.96583 * 9 8 6 36 36 H 1.08000 * 122.67781 * 0.35013 * 11 10 9 37 37 H 1.08001 * 124.37291 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.91329 * 266.08869 * 17 5 4 39 39 H 1.09002 * 109.91572 * 144.80699 * 17 5 4 40 40 H 1.09003 * 109.46913 * 307.83556 * 20 18 17 41 41 H 1.09002 * 109.47095 * 187.83666 * 20 18 17 42 42 H 0.96992 * 119.99716 * 359.97438 * 21 20 18 43 43 H 0.97001 * 120.00515 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0815 -0.7967 1.2112 5 7 3.4297 -1.2128 0.7603 6 6 4.5562 -1.2533 1.4992 7 8 4.5516 -0.8278 2.6396 8 6 5.7861 -1.8092 0.9298 9 6 7.0143 -1.7855 1.5158 10 6 7.9246 -2.4316 0.6344 11 6 9.3308 -2.7948 0.5326 12 6 9.6577 -3.4196 -0.5810 13 16 8.2645 -3.6283 -1.6251 14 6 7.2024 -2.8217 -0.4772 15 7 5.8946 -2.4399 -0.2943 16 1 5.1689 -2.5883 -0.9205 17 6 3.2871 -1.5748 -0.6622 18 6 2.0775 -0.7937 -1.2087 19 1 1.3204 -1.4821 -1.5840 20 6 2.5199 0.1640 -2.3170 21 7 2.9551 -0.6074 -3.4839 22 6 3.4030 0.0400 -4.6044 23 1 3.4312 1.1194 -4.6294 24 6 3.8208 -0.6909 -5.7080 25 7 3.7861 -2.0063 -5.6777 26 14 4.4311 0.1923 -7.2367 27 1 5.6113 1.0242 -6.8898 28 1 4.8147 -0.8072 -8.2658 29 1 3.3519 1.0619 -7.7700 30 1 -0.3633 -1.0260 0.0590 31 1 -0.3633 0.5640 0.8591 32 1 -0.3634 0.4619 -0.9180 33 1 1.4579 -1.6674 1.4133 34 1 2.1504 -0.1612 2.0941 35 1 7.2541 -1.3557 2.4771 36 1 10.0487 -2.5697 1.3074 37 1 10.6549 -3.7591 -0.8196 38 1 3.1106 -2.6462 -0.7568 39 1 4.1876 -1.2945 -1.2087 40 1 3.3462 0.7778 -1.9583 41 1 1.6849 0.8063 -2.5968 42 1 2.9302 -1.5768 -3.4613 43 1 4.0784 -2.5171 -6.4487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325545572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:07 Heat of formation + Delta-G solvation = 36.482153 kcal Electronic energy + Delta-G solvation = -26299.354279 eV Core-core repulsion = 22664.546879 eV Total energy + Delta-G solvation = -3634.807400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54345 -40.89191 -39.14683 -36.48395 -36.33584 -34.30150 -33.23316 -31.61061 -30.64768 -29.88229 -27.41253 -27.22407 -25.27853 -24.11530 -23.46055 -22.26375 -21.27765 -21.25217 -20.35888 -19.41757 -19.17100 -17.81013 -17.37778 -16.77874 -16.71629 -16.13374 -16.02395 -15.58062 -15.49850 -15.32785 -15.14639 -15.08783 -14.61329 -14.22683 -14.04375 -13.83754 -13.67036 -13.40033 -13.17022 -12.97349 -12.82432 -12.75948 -12.62644 -12.61273 -12.22340 -11.98384 -11.93546 -11.71619 -11.62250 -11.45342 -11.39378 -10.96749 -10.61439 -9.95462 -9.32546 -9.03289 -8.70360 -7.98020 -5.26184 0.07376 0.15628 0.41358 1.09585 1.46323 1.47403 1.53535 1.63610 1.75886 2.08028 2.24301 2.53289 3.14971 3.34190 3.41692 3.57029 3.66392 3.75436 3.99161 4.04302 4.15421 4.25627 4.36577 4.42672 4.48659 4.60910 4.61861 4.65044 4.66897 4.73959 4.79367 4.91146 4.99594 5.12365 5.14553 5.18495 5.25657 5.29917 5.40950 5.46462 5.50548 5.64434 6.02623 6.20280 6.24329 6.80805 7.32300 8.04131 8.29538 9.24420 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.007301 B = 0.005142 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.959158 B = 5443.663104 C = 8822.870605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 H 0.078 0.922 4 C 0.110 3.890 5 N -0.617 5.617 6 C 0.607 3.393 7 O -0.558 6.558 8 C -0.025 4.025 9 C -0.076 4.076 10 C -0.175 4.175 11 C -0.082 4.082 12 C -0.208 4.208 13 S 0.124 5.876 14 C -0.030 4.030 15 N -0.526 5.526 16 H 0.424 0.576 17 C 0.095 3.905 18 C -0.090 4.090 19 H 0.100 0.900 20 C 0.163 3.837 21 N -0.740 5.740 22 C -0.249 4.249 23 H 0.069 0.931 24 C -0.064 4.064 25 N -0.962 5.962 26 Si 0.964 3.036 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.205 0.795 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.008 0.992 41 H 0.029 0.971 42 H 0.377 0.623 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -2.844 14.382 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.011 4.011 5 N -0.349 5.349 6 C 0.398 3.602 7 O -0.437 6.437 8 C -0.138 4.138 9 C -0.104 4.104 10 C -0.188 4.188 11 C -0.112 4.112 12 C -0.341 4.341 13 S 0.378 5.622 14 C -0.260 4.260 15 N -0.133 5.133 16 H 0.268 0.732 17 C -0.029 4.029 18 C -0.110 4.110 19 H 0.118 0.882 20 C 0.036 3.964 21 N -0.384 5.384 22 C -0.380 4.380 23 H 0.087 0.913 24 C -0.257 4.257 25 N -0.612 5.612 26 Si 0.793 3.207 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.185 0.815 36 H 0.191 0.809 37 H 0.222 0.778 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.047 0.953 42 H 0.209 0.791 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.114 -3.120 13.479 14.181 hybrid contribution 0.198 0.619 -0.303 0.717 sum 3.313 -2.501 13.175 13.814 Atomic orbital electron populations 1.21702 0.91456 1.03167 1.02848 1.22275 0.97830 0.98832 0.91938 0.90363 1.22813 0.80661 0.99723 0.97922 1.48734 1.09097 1.65486 1.11625 1.16625 0.81054 0.78101 0.84447 1.90811 1.84460 1.49987 1.18477 1.19987 0.96184 1.08988 0.88654 1.20912 0.88843 1.00587 1.00107 1.19805 0.94855 1.08567 0.95536 1.20570 0.92236 0.99083 0.99269 1.25329 1.02703 1.08462 0.97637 1.84354 0.97731 1.60904 1.19216 1.24095 0.89380 1.09361 1.03116 1.42190 1.07444 1.47024 1.16690 0.73154 1.22442 0.99933 1.00139 0.80337 1.22257 0.96073 0.97543 0.95090 0.88204 1.20815 0.95955 0.93334 0.86298 1.42476 1.77987 1.05530 1.12371 1.19490 1.34291 0.91514 0.92751 0.91253 1.25404 1.03064 0.96169 1.01059 1.69748 1.54971 1.05228 1.31244 0.85364 0.78298 0.77304 0.79716 1.20902 1.21924 1.20456 0.91233 0.90656 0.92221 0.88563 0.89455 0.81484 0.80857 0.77791 0.89889 0.91841 0.97396 0.95273 0.79108 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.17 71.98 0.66 -1.59 16 2 C -0.09 -1.95 3.22 -9.52 -0.03 -1.98 16 3 H 0.08 1.87 7.86 -2.39 -0.02 1.85 16 4 C 0.11 2.44 6.56 86.79 0.57 3.01 16 5 N -0.62 -17.27 3.29 -813.95 -2.68 -19.95 16 6 C 0.61 19.59 7.84 86.39 0.68 20.26 16 7 O -0.56 -20.16 17.05 -4.42 -0.08 -20.23 16 8 C -0.02 -0.79 6.77 39.81 0.27 -0.52 16 9 C -0.08 -2.24 10.59 22.77 0.24 -2.00 16 10 C -0.17 -4.94 6.80 -20.40 -0.14 -5.08 16 11 C -0.08 -1.73 10.42 23.39 0.24 -1.49 16 12 C -0.21 -4.05 11.03 67.04 0.74 -3.31 16 13 S 0.12 3.24 23.24 -56.49 -1.31 1.92 16 14 C -0.03 -0.93 8.41 83.80 0.70 -0.22 16 15 N -0.53 -16.52 5.48 -179.04 -0.98 -17.50 16 16 H 0.42 13.11 5.39 -92.71 -0.50 12.61 16 17 C 0.09 2.68 4.74 86.53 0.41 3.09 16 18 C -0.09 -2.49 2.62 -9.90 -0.03 -2.52 16 19 H 0.10 2.64 7.85 -2.39 -0.02 2.62 16 20 C 0.16 6.01 5.32 86.38 0.46 6.47 16 21 N -0.74 -34.91 5.38 -343.44 -1.85 -36.76 16 22 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 23 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 24 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 25 N -0.96 -55.91 13.06 21.65 0.28 -55.63 16 26 Si 0.96 45.04 29.55 68.60 2.03 47.07 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 30 H 0.07 1.03 8.10 -2.38 -0.02 1.01 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.76 8.02 -2.39 -0.02 1.74 16 34 H 0.09 1.98 7.81 -2.38 -0.02 1.96 16 35 H 0.17 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.21 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.08 2.12 7.91 -2.39 -0.02 2.10 16 39 H 0.06 2.14 5.61 -2.39 -0.01 2.13 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.38 18.41 7.56 -92.71 -0.70 17.71 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -67.52 366.36 1.35 -66.17 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.15 Total: 36.38 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.09 Total: -1.48 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -5.23 Total: -129.83 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.08 Total: -20.23 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.31 Total: 1.92 kcal Total: -67.52 1.35 -66.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325545572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.654 kcal (2) G-P(sol) polarization free energy of solvation -67.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds