Wall clock time and date at job start Tue Mar 31 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.63732 * 2 1 4 4 C 1.54324 * 110.72363 * 236.85827 * 2 1 3 5 5 N 1.47026 * 107.26828 * 263.65445 * 4 2 1 6 6 C 1.34774 * 125.64304 * 181.02169 * 5 4 2 7 7 O 1.21722 * 119.99764 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00585 * 0.02562 * 6 5 4 9 9 C 1.36108 * 125.71740 * 180.26639 * 8 6 5 10 10 C 1.42221 * 107.62831 * 180.10651 * 9 8 6 11 11 C 1.45593 * 140.77915 * 179.97438 * 10 9 8 12 12 C 1.31810 * 114.63478 * 179.64005 * 11 10 9 13 13 S 1.75357 * 111.24335 * 0.02807 * 12 11 10 14 14 C 1.38175 * 106.99717 * 359.64296 * 10 9 8 15 15 N 1.37461 * 108.16359 * 0.21679 * 14 10 9 16 16 H 0.96998 * 125.67885 * 180.02562 * 15 14 10 17 17 C 1.47421 * 108.70315 * 1.28333 * 5 4 2 18 18 C 1.55129 * 104.72577 * 335.55480 * 17 5 4 19 19 H 1.09004 * 111.19384 * 279.19429 * 18 17 5 20 20 C 1.52998 * 110.94107 * 155.28914 * 18 17 5 21 21 N 1.46500 * 109.46917 * 72.95784 * 20 18 17 22 22 C 1.36933 * 119.99982 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00087 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00427 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99652 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00328 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47396 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47123 * 120.00083 * 26 24 22 29 29 H 1.48508 * 109.47237 * 239.99975 * 26 24 22 30 30 H 1.09005 * 109.46728 * 181.68722 * 1 2 3 31 31 H 1.08991 * 109.46782 * 301.68852 * 1 2 3 32 32 H 1.08997 * 109.47062 * 61.69158 * 1 2 3 33 33 H 1.09001 * 109.88554 * 144.23472 * 4 2 1 34 34 H 1.09001 * 109.87966 * 23.06393 * 4 2 1 35 35 H 1.07998 * 126.18356 * 359.76844 * 9 8 6 36 36 H 1.07998 * 122.68357 * 359.65873 * 11 10 9 37 37 H 1.08004 * 124.37636 * 180.02562 * 12 11 10 38 38 H 1.09003 * 110.36783 * 94.48514 * 17 5 4 39 39 H 1.09003 * 110.36369 * 216.80422 * 17 5 4 40 40 H 1.09000 * 109.46958 * 192.95912 * 20 18 17 41 41 H 1.08996 * 109.47021 * 312.96039 * 20 18 17 42 42 H 0.97002 * 120.00029 * 0.02562 * 21 20 18 43 43 H 0.96998 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 2.3757 -2.1507 -0.7415 6 6 2.8903 -3.1435 -1.4937 7 8 3.0979 -4.2364 -0.9995 8 6 3.1999 -2.9076 -2.9060 9 6 3.7154 -3.8240 -3.7703 10 6 3.8645 -3.1883 -5.0337 11 6 4.3183 -3.4651 -6.3891 12 6 4.2236 -2.4456 -7.2192 13 16 3.5644 -1.0323 -6.4172 14 6 3.4180 -1.8889 -4.8872 15 7 3.0120 -1.7195 -3.5849 16 1 2.6530 -0.9020 -3.2060 17 6 2.0141 -2.2517 0.6841 18 6 2.0828 -0.7948 1.2125 19 1 3.1096 -0.5042 1.4348 20 6 1.1874 -0.6155 2.4401 21 7 1.8007 -1.2794 3.5930 22 6 1.1754 -1.2528 4.8109 23 1 0.2303 -0.7420 4.9217 24 6 1.7567 -1.8814 5.9036 25 7 2.9088 -2.5034 5.7688 26 14 0.9041 -1.8444 7.5652 27 1 -0.3676 -1.0860 7.4522 28 1 0.6155 -3.2333 8.0044 29 1 1.7870 -1.1840 8.5601 30 1 -0.3633 -1.0273 0.0303 31 1 -0.3632 0.5398 0.8744 32 1 -0.3633 0.4873 -0.9047 33 1 2.9852 -0.3162 -1.5800 34 1 1.3252 -0.8249 -1.9978 35 1 3.9708 -4.8472 -3.5372 36 1 4.7016 -4.4288 -6.6904 37 1 4.5145 -2.4767 -8.2589 38 1 1.0051 -2.6497 0.7922 39 1 2.7297 -2.8809 1.2133 40 1 1.0705 0.4472 2.6524 41 1 0.2100 -1.0566 2.2443 42 1 2.6498 -1.7379 3.4936 43 1 3.3153 -2.9424 6.5323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325545573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:12 Heat of formation + Delta-G solvation = 58.080088 kcal Electronic energy + Delta-G solvation = -25696.543157 eV Core-core repulsion = 22062.672315 eV Total energy + Delta-G solvation = -3633.870843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.68272 -39.92390 -37.99543 -35.68974 -34.74579 -32.96447 -31.29203 -30.75869 -29.67577 -28.38877 -26.91522 -25.62539 -23.86197 -23.18985 -22.23302 -21.62868 -20.39483 -19.62947 -19.37375 -18.49270 -17.19811 -16.76846 -16.23925 -15.68593 -15.43464 -15.18097 -14.85186 -14.76358 -14.48905 -14.04707 -13.79074 -13.60887 -13.37209 -13.17440 -12.94433 -12.66653 -12.52119 -12.38155 -12.14674 -11.94961 -11.91371 -11.70237 -11.13928 -11.09507 -10.88600 -10.65473 -10.52017 -10.44110 -10.18184 -10.00333 -9.77130 -9.71655 -8.90576 -8.79329 -8.56813 -7.94895 -6.95477 -5.77992 -3.07708 0.76850 1.03708 1.15542 1.67450 2.62049 2.70087 2.93834 3.25056 3.42606 3.47776 3.50467 4.14356 4.28192 4.48259 4.51747 4.62021 4.65024 4.75927 4.98134 5.13857 5.15865 5.24923 5.32561 5.38102 5.46276 5.56358 5.64803 5.69735 5.81092 5.82323 5.90026 5.94541 6.04781 6.09373 6.13325 6.21918 6.29332 6.36197 6.45399 6.62021 6.75080 6.85471 7.34968 7.68144 7.99427 8.40003 9.51389 10.07755 10.41773 11.44658 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.002295 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.878141 B =12198.303949 C =12955.287172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.090 3.910 5 N -0.615 5.615 6 C 0.598 3.402 7 O -0.517 6.517 8 C 0.000 4.000 9 C -0.070 4.070 10 C -0.163 4.163 11 C -0.068 4.068 12 C -0.223 4.223 13 S 0.128 5.872 14 C -0.014 4.014 15 N -0.529 5.529 16 H 0.421 0.579 17 C 0.118 3.882 18 C -0.101 4.101 19 H 0.088 0.912 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 5.231 -27.996 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.111 0.889 4 C -0.033 4.033 5 N -0.349 5.349 6 C 0.387 3.613 7 O -0.393 6.393 8 C -0.113 4.113 9 C -0.098 4.098 10 C -0.175 4.175 11 C -0.098 4.098 12 C -0.357 4.357 13 S 0.381 5.619 14 C -0.243 4.243 15 N -0.137 5.137 16 H 0.265 0.735 17 C -0.004 4.004 18 C -0.121 4.121 19 H 0.106 0.894 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.218 0.782 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.087 6.134 -27.978 28.643 hybrid contribution 0.065 -1.073 1.453 1.807 sum -0.022 5.061 -26.525 27.004 Atomic orbital electron populations 1.21860 0.93680 1.02655 1.02113 1.22178 0.96884 0.99135 0.93120 0.88948 1.22357 0.99235 0.83345 0.98397 1.48455 1.62846 1.10924 1.12653 1.16588 0.77710 0.83726 0.83293 1.90911 1.53396 1.23036 1.71951 1.20062 1.11740 0.86387 0.93100 1.20744 1.00514 0.99312 0.89236 1.19397 1.09994 0.93054 0.95098 1.20347 0.99705 0.99807 0.89976 1.24857 1.10826 0.96148 1.03852 1.83898 1.69421 1.13068 0.95475 1.23622 1.09223 1.00176 0.91246 1.42194 1.52590 1.12779 1.06146 0.73466 1.22454 1.01672 0.98058 0.78166 1.22685 1.01361 0.93255 0.94779 0.89409 1.20624 0.94099 0.96063 0.85409 1.42386 1.25525 1.64648 1.05212 1.19232 1.02999 1.28555 0.86485 0.91114 1.24762 0.97281 1.00700 0.98185 1.69669 1.17948 1.40071 1.30217 0.86122 0.78500 0.77231 0.84338 1.20569 1.21819 1.21876 0.92143 0.91037 0.92855 0.91608 0.91450 0.82442 0.83697 0.81248 0.90663 0.89371 0.95805 0.95627 0.78236 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.91 37.16 0.29 -1.17 16 2 C -0.09 -0.99 3.46 -88.78 -0.31 -1.30 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.09 0.89 4.67 -3.06 -0.01 0.88 16 5 N -0.61 -8.47 3.32 -171.98 -0.57 -9.04 16 6 C 0.60 9.22 7.81 -12.94 -0.10 9.12 16 7 O -0.52 -9.88 17.10 5.17 0.09 -9.79 16 8 C 0.00 0.00 6.82 -82.47 -0.56 -0.56 16 9 C -0.07 -0.87 10.58 -38.82 -0.41 -1.29 16 10 C -0.16 -1.82 6.80 -105.46 -0.72 -2.54 16 11 C -0.07 -0.58 10.42 -38.54 -0.40 -0.98 16 12 C -0.22 -1.59 11.03 28.84 0.32 -1.27 16 13 S 0.13 1.00 23.24 -107.50 -2.50 -1.50 16 14 C -0.01 -0.14 8.41 -15.05 -0.13 -0.27 16 15 N -0.53 -5.53 5.69 -7.94 -0.05 -5.58 16 16 H 0.42 3.47 4.83 -40.82 -0.20 3.27 16 17 C 0.12 1.87 6.01 -2.41 -0.01 1.86 16 18 C -0.10 -1.50 2.93 -88.35 -0.26 -1.76 16 19 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.17 3.07 4.55 -4.04 -0.02 3.05 16 21 N -0.73 -18.01 5.55 -59.91 -0.33 -18.34 16 22 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 26 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 31 H 0.07 0.76 7.13 -51.93 -0.37 0.39 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.56 7.07 -51.93 -0.37 0.19 16 34 H 0.07 0.55 6.91 -51.93 -0.36 0.20 16 35 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 38 H 0.08 1.24 7.48 -51.93 -0.39 0.85 16 39 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 40 H 0.02 0.44 8.05 -51.93 -0.42 0.03 16 41 H 0.03 0.48 6.95 -51.93 -0.36 0.12 16 42 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -33.45 361.97 -10.43 -43.88 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.66 Total: 8.57 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.57 Total: -3.50 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.22 Total: -60.45 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.45 -10.43 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325545573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.959 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds