Wall clock time and date at job start Tue Mar 31 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.63732 * 2 1 4 4 C 1.54324 * 110.72363 * 236.85827 * 2 1 3 5 5 N 1.47026 * 107.26828 * 263.65445 * 4 2 1 6 6 C 1.34774 * 125.64304 * 181.02169 * 5 4 2 7 7 O 1.21722 * 119.99764 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00585 * 0.02562 * 6 5 4 9 9 C 1.36108 * 125.71740 * 180.26639 * 8 6 5 10 10 C 1.42221 * 107.62831 * 180.10651 * 9 8 6 11 11 C 1.45593 * 140.77915 * 179.97438 * 10 9 8 12 12 C 1.31810 * 114.63478 * 179.64005 * 11 10 9 13 13 S 1.75357 * 111.24335 * 0.02807 * 12 11 10 14 14 C 1.38175 * 106.99717 * 359.64296 * 10 9 8 15 15 N 1.37461 * 108.16359 * 0.21679 * 14 10 9 16 16 H 0.96998 * 125.67885 * 180.02562 * 15 14 10 17 17 C 1.47421 * 108.70315 * 1.28333 * 5 4 2 18 18 C 1.55129 * 104.72577 * 335.55480 * 17 5 4 19 19 H 1.09004 * 111.19384 * 279.19429 * 18 17 5 20 20 C 1.52998 * 110.94107 * 155.28914 * 18 17 5 21 21 N 1.46500 * 109.46917 * 72.95784 * 20 18 17 22 22 C 1.36933 * 119.99982 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00087 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00427 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99652 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00328 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47396 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47123 * 120.00083 * 26 24 22 29 29 H 1.48508 * 109.47237 * 239.99975 * 26 24 22 30 30 H 1.09005 * 109.46728 * 181.68722 * 1 2 3 31 31 H 1.08991 * 109.46782 * 301.68852 * 1 2 3 32 32 H 1.08997 * 109.47062 * 61.69158 * 1 2 3 33 33 H 1.09001 * 109.88554 * 144.23472 * 4 2 1 34 34 H 1.09001 * 109.87966 * 23.06393 * 4 2 1 35 35 H 1.07998 * 126.18356 * 359.76844 * 9 8 6 36 36 H 1.07998 * 122.68357 * 359.65873 * 11 10 9 37 37 H 1.08004 * 124.37636 * 180.02562 * 12 11 10 38 38 H 1.09003 * 110.36783 * 94.48514 * 17 5 4 39 39 H 1.09003 * 110.36369 * 216.80422 * 17 5 4 40 40 H 1.09000 * 109.46958 * 192.95912 * 20 18 17 41 41 H 1.08996 * 109.47021 * 312.96039 * 20 18 17 42 42 H 0.97002 * 120.00029 * 0.02562 * 21 20 18 43 43 H 0.96998 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 2.3757 -2.1507 -0.7415 6 6 2.8903 -3.1435 -1.4937 7 8 3.0979 -4.2364 -0.9995 8 6 3.1999 -2.9076 -2.9060 9 6 3.7154 -3.8240 -3.7703 10 6 3.8645 -3.1883 -5.0337 11 6 4.3183 -3.4651 -6.3891 12 6 4.2236 -2.4456 -7.2192 13 16 3.5644 -1.0323 -6.4172 14 6 3.4180 -1.8889 -4.8872 15 7 3.0120 -1.7195 -3.5849 16 1 2.6530 -0.9020 -3.2060 17 6 2.0141 -2.2517 0.6841 18 6 2.0828 -0.7948 1.2125 19 1 3.1096 -0.5042 1.4348 20 6 1.1874 -0.6155 2.4401 21 7 1.8007 -1.2794 3.5930 22 6 1.1754 -1.2528 4.8109 23 1 0.2303 -0.7420 4.9217 24 6 1.7567 -1.8814 5.9036 25 7 2.9088 -2.5034 5.7688 26 14 0.9041 -1.8444 7.5652 27 1 -0.3676 -1.0860 7.4522 28 1 0.6155 -3.2333 8.0044 29 1 1.7870 -1.1840 8.5601 30 1 -0.3633 -1.0273 0.0303 31 1 -0.3632 0.5398 0.8744 32 1 -0.3633 0.4873 -0.9047 33 1 2.9852 -0.3162 -1.5800 34 1 1.3252 -0.8249 -1.9978 35 1 3.9708 -4.8472 -3.5372 36 1 4.7016 -4.4288 -6.6904 37 1 4.5145 -2.4767 -8.2589 38 1 1.0051 -2.6497 0.7922 39 1 2.7297 -2.8809 1.2133 40 1 1.0705 0.4472 2.6524 41 1 0.2100 -1.0566 2.2443 42 1 2.6498 -1.7379 3.4936 43 1 3.3153 -2.9424 6.5323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325545573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:11 Heat of formation + Delta-G solvation = 36.279964 kcal Electronic energy + Delta-G solvation = -25697.488482 eV Core-core repulsion = 22062.672315 eV Total energy + Delta-G solvation = -3634.816167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.58888 -40.99161 -39.22111 -36.64098 -36.24624 -34.35882 -32.90456 -31.66895 -30.96803 -29.48048 -27.82060 -27.14865 -25.30757 -24.16605 -23.49229 -22.67589 -21.31843 -20.65661 -20.37706 -19.54939 -18.89103 -17.94178 -17.41878 -16.79000 -16.68372 -16.29293 -15.93304 -15.57353 -15.50304 -15.38727 -15.22956 -14.82484 -14.58789 -14.43497 -14.12330 -13.83730 -13.69149 -13.48800 -13.15830 -13.02946 -12.84471 -12.81047 -12.68750 -12.63017 -12.13506 -11.92188 -11.76825 -11.74317 -11.62393 -11.54135 -11.37951 -10.94393 -10.61092 -9.94662 -9.31262 -9.00599 -8.65460 -7.95784 -5.24919 0.06482 0.12385 0.41158 1.06224 1.46346 1.47502 1.57407 1.62013 1.75608 2.10195 2.23811 2.55023 3.16306 3.33664 3.38372 3.53955 3.73852 3.77152 3.97894 3.99219 4.10248 4.18089 4.30806 4.39090 4.47514 4.52872 4.61562 4.68364 4.75320 4.77621 4.78514 4.92852 4.98041 5.10675 5.16121 5.18922 5.23862 5.28701 5.41068 5.45421 5.49847 5.61535 6.08980 6.24458 6.26215 6.81523 7.32126 8.08486 8.29472 9.28126 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.002295 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.878141 B =12198.303949 C =12955.287172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.122 0.878 4 C 0.086 3.914 5 N -0.612 5.612 6 C 0.594 3.406 7 O -0.571 6.571 8 C -0.016 4.016 9 C -0.081 4.081 10 C -0.182 4.182 11 C -0.088 4.088 12 C -0.211 4.211 13 S 0.166 5.834 14 C -0.023 4.023 15 N -0.519 5.519 16 H 0.431 0.569 17 C 0.122 3.878 18 C -0.094 4.094 19 H 0.079 0.921 20 C 0.167 3.833 21 N -0.749 5.749 22 C -0.240 4.240 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.262 1.262 28 H -0.297 1.297 29 H -0.294 1.294 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.203 0.797 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.371 0.629 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 7.936 -31.035 32.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.141 0.859 4 C -0.036 4.036 5 N -0.344 5.344 6 C 0.385 3.615 7 O -0.450 6.450 8 C -0.129 4.129 9 C -0.110 4.110 10 C -0.195 4.195 11 C -0.118 4.118 12 C -0.344 4.344 13 S 0.419 5.581 14 C -0.252 4.252 15 N -0.129 5.129 16 H 0.277 0.723 17 C 0.000 4.000 18 C -0.113 4.113 19 H 0.097 0.903 20 C 0.040 3.960 21 N -0.391 5.391 22 C -0.372 4.372 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.186 1.186 28 H -0.224 1.224 29 H -0.221 1.221 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.220 0.780 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.202 0.798 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.126 8.925 -31.060 32.337 hybrid contribution 0.359 -1.864 2.212 2.915 sum -0.768 7.061 -28.848 29.709 Atomic orbital electron populations 1.21878 0.92984 1.01917 1.03527 1.22202 0.97337 0.99882 0.90461 0.85950 1.22658 1.01182 0.80929 0.98797 1.48454 1.62084 1.12372 1.11532 1.16962 0.77058 0.83215 0.84291 1.90868 1.55781 1.25177 1.73205 1.19599 1.13605 0.87879 0.91840 1.20897 1.00426 0.99355 0.90289 1.19717 1.10591 0.93440 0.95715 1.20539 1.00908 1.01362 0.88962 1.25335 1.08785 0.95220 1.05076 1.83865 1.68628 1.12487 0.93090 1.24115 1.08359 1.00798 0.91897 1.42010 1.52488 1.12260 1.06103 0.72286 1.22194 0.99873 0.98347 0.79609 1.22507 1.00444 0.93262 0.95136 0.90307 1.20784 0.94522 0.95761 0.84889 1.42658 1.25192 1.65010 1.06271 1.19681 1.02952 1.27030 0.87550 0.90190 1.25616 0.98254 1.01379 1.01984 1.69839 1.19786 1.41816 1.30853 0.85064 0.78014 0.76838 0.79792 1.18639 1.22404 1.22085 0.93843 0.91607 0.89635 0.89284 0.88761 0.82960 0.81997 0.77990 0.91614 0.93393 0.94625 0.95237 0.79765 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 7.91 71.98 0.57 -1.95 16 2 C -0.08 -1.47 3.46 -9.60 -0.03 -1.50 16 3 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.09 1.50 4.67 86.73 0.41 1.91 16 5 N -0.61 -17.11 3.32 -816.23 -2.71 -19.82 16 6 C 0.59 19.18 7.81 86.40 0.68 19.86 16 7 O -0.57 -23.60 17.10 -4.42 -0.08 -23.68 16 8 C -0.02 -0.42 6.82 39.81 0.27 -0.15 16 9 C -0.08 -2.07 10.58 22.76 0.24 -1.83 16 10 C -0.18 -3.86 6.80 -20.41 -0.14 -4.00 16 11 C -0.09 -1.30 10.42 23.39 0.24 -1.05 16 12 C -0.21 -2.24 11.03 67.05 0.74 -1.50 16 13 S 0.17 2.02 23.24 -56.49 -1.31 0.70 16 14 C -0.02 -0.42 8.41 83.80 0.70 0.28 16 15 N -0.52 -9.97 5.69 -179.04 -1.02 -10.99 16 16 H 0.43 5.89 4.83 -92.71 -0.45 5.44 16 17 C 0.12 4.10 6.01 86.93 0.52 4.63 16 18 C -0.09 -2.77 2.93 -9.32 -0.03 -2.79 16 19 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 20 C 0.17 6.14 4.55 86.38 0.39 6.53 16 21 N -0.75 -37.68 5.55 -343.46 -1.91 -39.59 16 22 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 25 N -0.97 -60.99 13.06 21.65 0.28 -60.70 16 26 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 27 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 30 H 0.04 0.91 7.35 -2.38 -0.02 0.89 16 31 H 0.06 1.23 7.13 -2.39 -0.02 1.22 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.21 7.07 -2.39 -0.02 1.19 16 34 H 0.09 1.21 6.91 -2.39 -0.02 1.20 16 35 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 39 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 40 H 0.04 1.26 8.05 -2.39 -0.02 1.24 16 41 H 0.03 1.09 6.95 -2.39 -0.02 1.07 16 42 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.57 361.97 1.05 -75.52 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.10 Total: 28.19 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 5.87 Total: 1.69 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -5.36 Total: -131.10 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.08 Total: -23.68 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.31 Total: 0.70 kcal Total: -76.57 1.05 -75.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325545573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.797 kcal (2) G-P(sol) polarization free energy of solvation -76.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds