Wall clock time and date at job start Tue Mar 31 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47207 * 2 1 4 4 C 1.53005 * 109.46889 * 119.99326 * 2 1 3 5 5 C 1.52992 * 109.47277 * 185.00136 * 4 2 1 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21758 * 120.00105 * 359.72647 * 7 6 5 9 9 C 1.46113 * 119.99859 * 179.97438 * 7 6 5 10 10 S 1.75815 * 125.47776 * 359.69734 * 9 7 6 11 11 C 1.70571 * 91.67456 * 179.97438 * 10 9 7 12 12 C 1.33581 * 111.17228 * 0.31141 * 11 10 9 13 13 C 1.37343 * 125.47527 * 179.97438 * 9 7 6 14 14 N 1.39884 * 123.49126 * 359.97137 * 13 9 7 15 15 C 1.36597 * 125.66960 * 309.68967 * 14 13 9 16 16 C 1.34847 * 108.19617 * 179.89063 * 15 14 13 17 17 C 1.40963 * 107.47124 * 0.36643 * 16 15 14 18 18 C 1.34836 * 107.47651 * 359.77094 * 17 16 15 19 19 N 1.46494 * 109.47377 * 239.99336 * 2 1 3 20 20 C 1.36941 * 119.99905 * 85.00513 * 19 2 1 21 21 H 1.07999 * 119.99771 * 359.97438 * 20 19 2 22 22 C 1.38803 * 120.00079 * 180.02562 * 20 19 2 23 23 N 1.31621 * 120.00170 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00155 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46793 * 90.00328 * 24 22 20 26 26 H 1.48501 * 109.47557 * 209.99999 * 24 22 20 27 27 H 1.48496 * 109.47059 * 330.00829 * 24 22 20 28 28 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47464 * 300.00752 * 1 2 3 30 30 H 1.09005 * 109.46708 * 60.00732 * 1 2 3 31 31 H 1.09004 * 109.46840 * 64.99959 * 4 2 1 32 32 H 1.09005 * 109.47310 * 305.00349 * 4 2 1 33 33 H 1.09004 * 109.47330 * 60.00123 * 5 4 2 34 34 H 1.09005 * 109.47124 * 300.00327 * 5 4 2 35 35 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 36 36 H 1.08001 * 124.40963 * 180.10653 * 11 10 9 37 37 H 1.08002 * 122.45449 * 179.78674 * 12 11 10 38 38 H 1.07998 * 125.90178 * 0.03078 * 15 14 13 39 39 H 1.08001 * 126.26043 * 180.17934 * 16 15 14 40 40 H 1.08008 * 126.25968 * 179.73834 * 17 16 15 41 41 H 1.08003 * 125.90028 * 180.02562 * 18 17 16 42 42 H 0.96992 * 120.00431 * 265.00012 * 19 2 1 43 43 H 0.97005 * 120.00321 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6132 1.3139 6 7 4.0530 -1.3042 2.5099 7 6 5.3739 -1.3396 2.7756 8 8 6.1618 -0.8016 2.0190 9 6 5.8609 -2.0283 3.9687 10 16 4.8557 -2.8490 5.1548 11 6 6.2198 -3.2926 6.0779 12 6 7.3467 -2.8400 5.5214 13 6 7.1771 -2.1340 4.3466 14 7 8.2361 -1.5826 3.6178 15 6 8.4498 -1.7431 2.2782 16 6 9.5643 -1.0610 1.9449 17 6 10.0627 -0.4642 3.1206 18 6 9.2318 -0.7991 4.1284 19 7 2.0184 -0.6907 -1.1960 20 6 2.1493 -0.0076 -2.3757 21 1 1.8921 1.0401 -2.4243 22 6 2.6115 -0.6622 -3.5091 23 7 2.7378 -0.0056 -4.6428 24 14 3.0557 -2.4747 -3.4251 25 1 1.8582 -3.2930 -3.7440 26 1 4.1307 -2.7670 -4.4070 27 1 3.5310 -2.8050 -2.0576 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7515 -1.7714 1.2058 32 1 1.6053 -0.2616 2.1371 33 1 3.8531 0.4371 1.3575 34 1 3.9994 -1.0728 0.4262 35 1 3.4257 -1.7356 3.1109 36 1 6.1775 -3.8620 6.9946 37 1 8.3192 -3.0145 5.9577 38 1 7.8316 -2.3152 1.6023 39 1 9.9975 -0.9882 0.9583 40 1 10.9485 0.1488 3.1999 41 1 9.3354 -0.4993 5.1608 42 1 2.2491 -1.6318 -1.1524 43 1 3.0605 -0.4631 -5.4349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328388794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:28 Heat of formation + Delta-G solvation = 70.744754 kcal Electronic energy + Delta-G solvation = -25624.277328 eV Core-core repulsion = 21990.955666 eV Total energy + Delta-G solvation = -3633.321662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58497 -39.59634 -37.91631 -36.75274 -34.57158 -32.31289 -32.08193 -30.40743 -29.43389 -28.73312 -28.05585 -25.18474 -23.74782 -22.75781 -21.52544 -21.34277 -20.34913 -20.09870 -19.12562 -18.87844 -17.55956 -17.41650 -16.10404 -15.70262 -15.52734 -15.07229 -14.98850 -14.51359 -14.09446 -14.01838 -13.76254 -13.65888 -13.40734 -13.15838 -12.81722 -12.70135 -12.54152 -12.26265 -12.21080 -12.01201 -11.95238 -11.59511 -11.27319 -11.07834 -10.80803 -10.68208 -10.46132 -10.12092 -9.93603 -9.64812 -9.56981 -9.32545 -9.02588 -8.92033 -8.33396 -8.02417 -7.26858 -5.74826 -3.10757 -0.07389 0.86935 1.27514 1.63728 2.50033 2.90689 3.01151 3.02712 3.17273 3.38876 3.40820 3.47377 4.37119 4.60128 4.60881 4.67065 4.97170 5.07935 5.14103 5.20227 5.33320 5.39491 5.44503 5.55170 5.57082 5.59121 5.67655 5.75338 5.91161 6.03713 6.18585 6.21882 6.30054 6.34694 6.35340 6.44473 6.47511 6.75818 6.95349 7.02273 7.22742 7.36385 7.44886 8.00730 8.08025 8.43960 9.21943 9.94428 10.13247 11.43620 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.003278 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.848656 B = 8539.674928 C = 9929.354279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.122 3.878 6 N -0.723 5.723 7 C 0.577 3.423 8 O -0.504 6.504 9 C -0.276 4.276 10 S 0.243 5.757 11 C -0.220 4.220 12 C -0.149 4.149 13 C 0.185 3.815 14 N -0.392 5.392 15 C 0.051 3.949 16 C -0.208 4.208 17 C -0.184 4.184 18 C -0.026 4.026 19 N -0.748 5.748 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.006 3.994 23 N -0.933 5.933 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.178 0.822 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.360 0.640 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.495 -7.568 27.074 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.175 4.175 5 C 0.000 4.000 6 N -0.375 5.375 7 C 0.362 3.638 8 O -0.381 6.381 9 C -0.399 4.399 10 S 0.510 5.490 11 C -0.358 4.358 12 C -0.181 4.181 13 C 0.077 3.923 14 N -0.067 5.067 15 C -0.076 4.076 16 C -0.232 4.232 17 C -0.209 4.209 18 C -0.151 4.151 19 N -0.392 5.392 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.581 5.581 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.226 0.774 36 H 0.196 0.804 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.193 0.807 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.264 -7.337 26.639 28.128 hybrid contribution 1.526 -1.342 0.171 2.039 sum 6.790 -8.680 26.810 28.986 Atomic orbital electron populations 1.22393 0.98533 1.00872 1.00580 1.20115 0.92109 0.95880 0.84859 0.92342 1.22128 0.93744 1.01807 0.99864 1.21523 0.94498 0.97591 0.86386 1.46001 1.06390 1.57216 1.27845 1.16737 0.82921 0.80374 0.83742 1.90969 1.54499 1.44831 1.47771 1.24719 0.96757 1.13541 1.04879 1.83050 1.07090 1.46550 1.12268 1.25069 0.97155 1.07304 1.06285 1.19785 1.00822 1.01265 0.96213 1.16986 0.85731 0.96455 0.93087 1.40913 1.18659 1.39433 1.07710 1.21804 0.98617 1.04464 0.82690 1.20894 0.98881 1.04481 0.98896 1.20903 1.01591 1.05645 0.92751 1.21755 0.91780 1.01997 0.99559 1.42821 1.79696 1.09409 1.07229 1.19054 1.37053 0.95610 0.85536 0.89162 1.24649 1.01349 0.97372 0.95587 1.69695 1.52639 1.35516 1.00263 0.86580 0.78051 0.86998 0.77041 1.21210 1.21735 1.20438 0.93619 0.94208 0.92162 0.91669 0.91343 0.91015 0.89888 0.77395 0.80445 0.82978 0.82421 0.84447 0.84547 0.82426 0.80724 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 2 C 0.18 3.24 2.89 -67.93 -0.20 3.05 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.90 4.87 -26.73 -0.13 -2.03 16 5 C 0.12 1.90 5.56 -4.05 -0.02 1.88 16 6 N -0.72 -9.36 5.55 -61.79 -0.34 -9.70 16 7 C 0.58 8.57 7.72 -13.10 -0.10 8.47 16 8 O -0.50 -9.48 13.01 5.14 0.07 -9.41 16 9 C -0.28 -3.25 6.43 -36.75 -0.24 -3.49 16 10 S 0.24 1.72 22.13 -107.50 -2.38 -0.66 16 11 C -0.22 -1.36 10.90 29.10 0.32 -1.04 16 12 C -0.15 -1.24 9.97 -41.26 -0.41 -1.65 16 13 C 0.18 2.18 5.99 -84.56 -0.51 1.68 16 14 N -0.39 -5.37 2.66 -61.59 -0.16 -5.53 16 15 C 0.05 0.78 8.52 -16.63 -0.14 0.64 16 16 C -0.21 -3.02 10.86 -39.75 -0.43 -3.45 16 17 C -0.18 -2.37 10.86 -39.76 -0.43 -2.81 16 18 C -0.03 -0.32 11.24 -16.63 -0.19 -0.50 16 19 N -0.75 -17.10 4.38 -53.43 -0.23 -17.33 16 20 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.54 13.97 55.49 0.78 -28.77 16 24 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.58 7.75 -51.93 -0.40 1.18 16 35 H 0.39 3.81 7.57 -40.82 -0.31 3.50 16 36 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.16 2.49 7.42 -52.49 -0.39 2.10 16 39 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -34.99 373.37 -9.74 -44.73 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.99 Total: 11.81 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.38 Total: -8.42 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.03 Total: -61.33 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.99 -9.74 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328388794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.479 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds