Wall clock time and date at job start Tue Mar 31 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47207 * 2 1 4 4 C 1.53005 * 109.46889 * 119.99326 * 2 1 3 5 5 C 1.52992 * 109.47277 * 185.00136 * 4 2 1 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21758 * 120.00105 * 359.72647 * 7 6 5 9 9 C 1.46113 * 119.99859 * 179.97438 * 7 6 5 10 10 S 1.75815 * 125.47776 * 359.69734 * 9 7 6 11 11 C 1.70571 * 91.67456 * 179.97438 * 10 9 7 12 12 C 1.33581 * 111.17228 * 0.31141 * 11 10 9 13 13 C 1.37343 * 125.47527 * 179.97438 * 9 7 6 14 14 N 1.39884 * 123.49126 * 359.97137 * 13 9 7 15 15 C 1.36597 * 125.66960 * 309.68967 * 14 13 9 16 16 C 1.34847 * 108.19617 * 179.89063 * 15 14 13 17 17 C 1.40963 * 107.47124 * 0.36643 * 16 15 14 18 18 C 1.34836 * 107.47651 * 359.77094 * 17 16 15 19 19 N 1.46494 * 109.47377 * 239.99336 * 2 1 3 20 20 C 1.36941 * 119.99905 * 85.00513 * 19 2 1 21 21 H 1.07999 * 119.99771 * 359.97438 * 20 19 2 22 22 C 1.38803 * 120.00079 * 180.02562 * 20 19 2 23 23 N 1.31621 * 120.00170 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00155 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46793 * 90.00328 * 24 22 20 26 26 H 1.48501 * 109.47557 * 209.99999 * 24 22 20 27 27 H 1.48496 * 109.47059 * 330.00829 * 24 22 20 28 28 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47464 * 300.00752 * 1 2 3 30 30 H 1.09005 * 109.46708 * 60.00732 * 1 2 3 31 31 H 1.09004 * 109.46840 * 64.99959 * 4 2 1 32 32 H 1.09005 * 109.47310 * 305.00349 * 4 2 1 33 33 H 1.09004 * 109.47330 * 60.00123 * 5 4 2 34 34 H 1.09005 * 109.47124 * 300.00327 * 5 4 2 35 35 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 36 36 H 1.08001 * 124.40963 * 180.10653 * 11 10 9 37 37 H 1.08002 * 122.45449 * 179.78674 * 12 11 10 38 38 H 1.07998 * 125.90178 * 0.03078 * 15 14 13 39 39 H 1.08001 * 126.26043 * 180.17934 * 16 15 14 40 40 H 1.08008 * 126.25968 * 179.73834 * 17 16 15 41 41 H 1.08003 * 125.90028 * 180.02562 * 18 17 16 42 42 H 0.96992 * 120.00431 * 265.00012 * 19 2 1 43 43 H 0.97005 * 120.00321 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6132 1.3139 6 7 4.0530 -1.3042 2.5099 7 6 5.3739 -1.3396 2.7756 8 8 6.1618 -0.8016 2.0190 9 6 5.8609 -2.0283 3.9687 10 16 4.8557 -2.8490 5.1548 11 6 6.2198 -3.2926 6.0779 12 6 7.3467 -2.8400 5.5214 13 6 7.1771 -2.1340 4.3466 14 7 8.2361 -1.5826 3.6178 15 6 8.4498 -1.7431 2.2782 16 6 9.5643 -1.0610 1.9449 17 6 10.0627 -0.4642 3.1206 18 6 9.2318 -0.7991 4.1284 19 7 2.0184 -0.6907 -1.1960 20 6 2.1493 -0.0076 -2.3757 21 1 1.8921 1.0401 -2.4243 22 6 2.6115 -0.6622 -3.5091 23 7 2.7378 -0.0056 -4.6428 24 14 3.0557 -2.4747 -3.4251 25 1 1.8582 -3.2930 -3.7440 26 1 4.1307 -2.7670 -4.4070 27 1 3.5310 -2.8050 -2.0576 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7515 -1.7714 1.2058 32 1 1.6053 -0.2616 2.1371 33 1 3.8531 0.4371 1.3575 34 1 3.9994 -1.0728 0.4262 35 1 3.4257 -1.7356 3.1109 36 1 6.1775 -3.8620 6.9946 37 1 8.3192 -3.0145 5.9577 38 1 7.8316 -2.3152 1.6023 39 1 9.9975 -0.9882 0.9583 40 1 10.9485 0.1488 3.1999 41 1 9.3354 -0.4993 5.1608 42 1 2.2491 -1.6318 -1.1524 43 1 3.0605 -0.4631 -5.4349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328388794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:27 Heat of formation + Delta-G solvation = 47.521188 kcal Electronic energy + Delta-G solvation = -25625.284377 eV Core-core repulsion = 21990.955666 eV Total energy + Delta-G solvation = -3634.328711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.52821 -40.71397 -38.73363 -38.20160 -35.97514 -34.24383 -32.92694 -31.91356 -30.81007 -29.80697 -29.15421 -26.09635 -25.47695 -24.10224 -22.49983 -22.32069 -21.61461 -21.32782 -20.12220 -19.99119 -19.44135 -18.25663 -17.14533 -17.02443 -16.56242 -16.48387 -15.87936 -15.75111 -15.51090 -15.20093 -15.03529 -14.70042 -14.66501 -14.37220 -14.26722 -13.77528 -13.73758 -13.59422 -13.40923 -13.20878 -13.00903 -12.92708 -12.63534 -12.33459 -12.28421 -12.18030 -12.08347 -11.79875 -11.65223 -11.21302 -10.99963 -10.45429 -10.31530 -9.87028 -9.30981 -9.17006 -9.06014 -8.02534 -5.34333 -0.82459 0.20780 0.68176 0.92852 1.33132 1.37750 1.43878 1.53632 1.93302 1.98729 2.06568 2.11896 2.46760 3.29826 3.60591 3.62797 3.87134 3.89388 3.97442 4.12419 4.22828 4.25861 4.29363 4.49985 4.61814 4.62930 4.70323 4.74232 4.80775 4.91005 4.96206 4.97704 5.05164 5.10733 5.28652 5.30673 5.34241 5.35733 5.57772 5.79321 6.00386 6.20469 6.22179 6.35139 6.51657 7.04188 7.09299 7.86267 8.03437 9.19606 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.003278 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.848656 B = 8539.674928 C = 9929.354279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.119 4.119 5 C 0.131 3.869 6 N -0.709 5.709 7 C 0.571 3.429 8 O -0.558 6.558 9 C -0.323 4.323 10 S 0.317 5.683 11 C -0.194 4.194 12 C -0.165 4.165 13 C 0.167 3.833 14 N -0.396 5.396 15 C 0.026 3.974 16 C -0.227 4.227 17 C -0.201 4.201 18 C -0.020 4.020 19 N -0.751 5.751 20 C -0.222 4.222 21 H 0.056 0.944 22 C -0.066 4.066 23 N -0.986 5.986 24 Si 0.951 3.049 25 H -0.273 1.273 26 H -0.302 1.302 27 H -0.258 1.258 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.411 0.589 36 H 0.220 0.780 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.191 0.809 42 H 0.364 0.636 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 -9.977 32.151 34.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.061 3.939 3 H 0.059 0.941 4 C -0.158 4.158 5 C 0.007 3.993 6 N -0.361 5.361 7 C 0.358 3.642 8 O -0.438 6.438 9 C -0.445 4.445 10 S 0.585 5.415 11 C -0.332 4.332 12 C -0.195 4.195 13 C 0.058 3.942 14 N -0.071 5.071 15 C -0.102 4.102 16 C -0.251 4.251 17 C -0.225 4.225 18 C -0.146 4.146 19 N -0.395 5.395 20 C -0.353 4.353 21 H 0.074 0.926 22 C -0.257 4.257 23 N -0.638 5.638 24 Si 0.779 3.221 25 H -0.199 1.199 26 H -0.229 1.229 27 H -0.183 1.183 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.237 0.763 37 H 0.186 0.814 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.208 0.792 42 H 0.197 0.803 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.015 -9.775 31.821 33.529 hybrid contribution 1.810 -0.523 -1.248 2.260 sum 5.825 -10.299 30.572 32.782 Atomic orbital electron populations 1.22242 0.96442 1.01702 1.01007 1.20418 0.93484 0.95211 0.84824 0.94108 1.21990 0.91984 1.02756 0.99033 1.21209 0.95717 0.96299 0.86067 1.45737 1.06401 1.56783 1.27181 1.17261 0.82839 0.79769 0.84284 1.90941 1.55767 1.47182 1.49920 1.24599 0.98189 1.16043 1.05648 1.82763 1.05578 1.43778 1.09391 1.25637 0.95993 1.05000 1.06575 1.19872 1.02510 1.01779 0.95358 1.17528 0.85277 0.97191 0.94181 1.41068 1.19383 1.39435 1.07190 1.21638 0.98999 1.05607 0.83924 1.21131 0.99202 1.04976 0.99804 1.21205 1.02795 1.06323 0.92204 1.22331 0.90783 1.00590 1.00849 1.42849 1.79952 1.09552 1.07165 1.19029 1.34549 0.94407 0.87355 0.92567 1.25446 1.02646 1.02273 0.95329 1.69880 1.55100 1.37591 1.01182 0.85464 0.77658 0.81325 0.77630 1.19930 1.22902 1.18252 0.92529 0.90307 0.95248 0.89777 0.87132 0.92957 0.93937 0.75154 0.76311 0.81401 0.84366 0.84487 0.82463 0.79156 0.80320 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.49 71.98 0.68 -4.02 16 2 C 0.17 5.89 2.89 44.99 0.13 6.02 16 3 H 0.04 1.57 8.08 -2.38 -0.02 1.55 16 4 C -0.12 -2.98 4.87 30.59 0.15 -2.83 16 5 C 0.13 4.03 5.56 86.38 0.48 4.52 16 6 N -0.71 -17.50 5.55 -467.60 -2.60 -20.10 16 7 C 0.57 17.10 7.72 86.28 0.67 17.77 16 8 O -0.56 -22.29 13.01 -4.53 -0.06 -22.35 16 9 C -0.32 -7.16 6.43 24.10 0.15 -7.00 16 10 S 0.32 3.13 22.13 -56.49 -1.25 1.88 16 11 C -0.19 -1.41 10.90 66.76 0.73 -0.68 16 12 C -0.16 -2.20 9.97 21.18 0.21 -1.99 16 13 C 0.17 3.74 5.99 37.61 0.23 3.96 16 14 N -0.40 -10.96 2.66 -348.78 -0.93 -11.89 16 15 C 0.03 0.86 8.52 83.17 0.71 1.57 16 16 C -0.23 -7.04 10.86 22.16 0.24 -6.80 16 17 C -0.20 -5.23 10.86 22.16 0.24 -4.99 16 18 C -0.02 -0.47 11.24 83.17 0.94 0.46 16 19 N -0.75 -34.37 4.38 -322.94 -1.41 -35.79 16 20 C -0.22 -12.81 10.41 84.03 0.87 -11.94 16 21 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 23 N -0.99 -65.18 13.97 21.65 0.30 -64.88 16 24 Si 0.95 47.25 27.74 68.60 1.90 49.15 16 25 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 27 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.04 1.66 7.75 -2.38 -0.02 1.64 16 35 H 0.41 6.71 7.57 -92.71 -0.70 6.01 16 36 H 0.22 -0.20 8.06 -2.91 -0.02 -0.23 16 37 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.14 4.89 7.42 -2.91 -0.02 4.87 16 39 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 42 H 0.36 16.09 5.66 -92.71 -0.52 15.57 16 43 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16 Total: -1.00 -83.99 373.37 2.60 -81.39 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.25 Total: 32.04 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 6.89 Total: -9.46 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -4.63 Total: -132.65 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.15 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.25 Total: 1.88 kcal Total: -83.99 2.60 -81.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328388794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.912 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds