Wall clock time and date at job start Tue Mar 31 2020 18:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47252 * 2 1 4 4 N 1.46506 * 109.46851 * 119.99671 * 2 1 3 5 5 C 1.36928 * 119.99882 * 274.99723 * 4 2 1 6 6 H 1.07995 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31612 * 120.00087 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46674 * 120.00256 * 9 7 5 12 12 H 1.48490 * 109.47290 * 240.00013 * 9 7 5 13 13 C 1.52997 * 109.47091 * 239.99191 * 2 1 3 14 14 H 1.08999 * 109.47510 * 174.99952 * 13 2 1 15 15 C 1.53001 * 109.47278 * 295.00493 * 13 2 1 16 16 N 1.46507 * 109.46767 * 55.00408 * 13 2 1 17 17 C 1.34776 * 119.99631 * 154.99978 * 16 13 2 18 18 O 1.21281 * 120.00265 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99724 * 179.97438 * 17 16 13 20 20 C 1.50696 * 109.46959 * 179.97438 * 19 17 16 21 21 N 1.28730 * 121.08637 * 269.71710 * 20 19 17 22 22 S 1.69387 * 108.98872 * 180.27659 * 21 20 19 23 23 C 1.76517 * 96.11897 * 359.97438 * 22 21 20 24 24 C 1.38778 * 133.55816 * 179.97438 * 23 22 21 25 25 C 1.36720 * 119.75832 * 180.02562 * 24 23 22 26 26 C 1.38971 * 120.15279 * 0.02562 * 25 24 23 27 27 C 1.36045 * 121.15676 * 0.02562 * 26 25 24 28 28 C 1.40805 * 105.51752 * 0.02562 * 23 22 21 29 29 H 1.08998 * 109.46991 * 300.00875 * 1 2 3 30 30 H 1.09001 * 109.46610 * 59.99884 * 1 2 3 31 31 H 1.08993 * 109.47666 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99968 * 94.99610 * 4 2 1 33 33 H 0.96997 * 120.00113 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46791 * 179.97438 * 15 13 2 35 35 H 1.08997 * 109.47434 * 299.99854 * 15 13 2 36 36 H 1.08998 * 109.47283 * 60.00290 * 15 13 2 37 37 H 0.96995 * 120.00152 * 334.99513 * 16 13 2 38 38 H 1.09002 * 109.47028 * 60.00195 * 19 17 16 39 39 H 1.08994 * 109.47095 * 300.00023 * 19 17 16 40 40 H 1.08005 * 120.12012 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.92156 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.42200 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.89102 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0074 2.3757 6 1 1.8927 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9242 -1.9389 3.4504 9 14 2.7904 0.2703 5.1182 10 1 2.3765 1.6827 4.9207 11 1 1.9291 -0.3574 6.1524 12 1 4.2071 0.2264 5.5607 13 6 2.0400 -0.7214 -1.2491 14 1 3.1263 -0.6445 -1.2951 15 6 1.6352 -2.1956 -1.1877 16 7 1.4559 -0.1038 -2.4423 17 6 2.0913 -0.1941 -3.6275 18 8 3.1469 -0.7862 -3.7061 19 6 1.4901 0.4407 -4.8550 20 6 2.3908 0.1974 -6.0385 21 7 3.3251 1.0283 -6.3447 22 16 4.1370 0.4627 -7.7194 23 6 3.1700 -1.0003 -7.9204 24 6 3.1898 -2.0411 -8.8382 25 6 2.2858 -3.0608 -8.7274 26 6 1.3500 -3.0555 -7.7001 27 6 1.3104 -2.0458 -6.7892 28 6 2.2295 -0.9771 -6.8728 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2489 -1.6318 1.1528 33 1 3.2475 -2.3961 4.2424 34 1 1.9981 -2.7094 -2.0779 35 1 2.0697 -2.6551 -0.3000 36 1 0.5489 -2.2725 -1.1419 37 1 0.6118 0.3699 -2.3794 38 1 1.3839 1.5135 -4.6943 39 1 0.5105 0.0033 -5.0475 40 1 3.9161 -2.0451 -9.6376 41 1 2.2985 -3.8719 -9.4405 42 1 0.6411 -3.8667 -7.6239 43 1 0.5742 -2.0621 -5.9992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329201899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:36 Heat of formation + Delta-G solvation = 25.262542 kcal Electronic energy + Delta-G solvation = -25462.393388 eV Core-core repulsion = 21827.099470 eV Total energy + Delta-G solvation = -3635.293918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51649 -39.52278 -37.33594 -36.57301 -33.93711 -32.11013 -31.59955 -30.79510 -30.45647 -28.90317 -28.23016 -24.50983 -24.02813 -23.37579 -22.99519 -21.22054 -19.95473 -19.17382 -18.81173 -17.59755 -17.11547 -16.70932 -15.97810 -15.54023 -15.25193 -15.17985 -14.72047 -14.60041 -14.30120 -14.13973 -13.78705 -13.70116 -13.33790 -12.89011 -12.69960 -12.44567 -12.30896 -12.19546 -11.95396 -11.90083 -11.65930 -11.32222 -11.05518 -10.96496 -10.85253 -10.74350 -10.49790 -10.25982 -10.17155 -9.98469 -9.83797 -9.63497 -9.27233 -8.96683 -8.84547 -8.13048 -7.02303 -5.80196 -3.09694 0.21761 0.84609 1.17361 1.55343 1.80831 2.68041 3.19175 3.39344 3.42224 3.47978 3.49713 3.96136 4.16030 4.52297 4.56796 4.59798 4.82754 4.85082 4.93021 4.94831 5.12499 5.27497 5.34890 5.45758 5.50352 5.60864 5.62787 5.69968 5.80223 5.84182 6.02788 6.04242 6.12538 6.26830 6.30645 6.37481 6.43162 6.44027 6.59934 6.69775 6.88820 7.05113 7.61470 7.67677 8.30733 8.38460 9.49707 10.04903 10.39572 11.42470 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.002293 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.710998 B =12205.581121 C =12589.229280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.720 5.720 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.136 3.864 14 H 0.088 0.912 15 C -0.158 4.158 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.530 6.530 19 C -0.082 4.082 20 C 0.182 3.818 21 N -0.428 5.428 22 S 0.186 5.814 23 C -0.134 4.134 24 C -0.082 4.082 25 C -0.083 4.083 26 C -0.124 4.124 27 C -0.047 4.047 28 C -0.120 4.120 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 0.064 -27.125 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.218 1.218 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.406 6.406 19 C -0.127 4.127 20 C -0.008 4.008 21 N -0.239 5.239 22 S 0.342 5.658 23 C -0.255 4.255 24 C -0.105 4.105 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.069 4.069 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.222 0.778 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.235 0.765 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.577 1.541 -27.278 27.702 hybrid contribution -1.412 -0.854 1.342 2.127 sum -5.989 0.687 -25.936 26.628 Atomic orbital electron populations 1.22535 0.99288 1.01250 0.99762 1.20362 0.92191 0.95608 0.86130 0.93048 1.42462 1.78222 1.10788 1.04836 1.19264 1.36811 0.93952 0.87097 0.91066 1.24749 1.01960 0.96002 0.98134 1.69662 1.50716 1.08672 1.28887 0.86115 0.77352 0.78774 0.83915 1.20557 1.21870 1.21839 1.21350 0.99076 0.92863 0.83531 0.89438 1.22133 1.01469 0.95780 1.02283 1.46193 1.25811 1.56791 1.08188 1.20090 0.85196 0.80524 0.84188 1.90759 1.22110 1.42362 1.85376 1.20533 0.98117 1.04702 0.89346 1.21793 0.93789 0.89748 0.95493 1.75705 1.10329 1.26955 1.10948 1.84816 1.39663 1.13917 1.27393 1.23502 1.00488 1.01492 0.99980 1.19987 1.00012 0.92411 0.98097 1.21058 0.94110 0.97602 0.97794 1.20775 0.99678 0.98823 0.95150 1.20691 0.96560 0.91500 0.98166 1.20094 0.99658 0.97255 0.96145 0.92385 0.94832 0.92792 0.77781 0.93472 0.93157 0.90508 0.92489 0.76546 0.86293 0.86476 0.84924 0.84729 0.84925 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.01 37.16 0.33 -2.34 16 2 C 0.17 3.15 2.93 -67.93 -0.20 2.95 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -17.42 5.03 -53.42 -0.27 -17.69 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 C 0.14 2.29 2.62 -67.93 -0.18 2.11 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 C -0.16 -2.59 9.00 37.16 0.33 -2.26 16 16 N -0.72 -9.24 4.99 -53.80 -0.27 -9.51 16 17 C 0.52 7.12 7.79 -10.98 -0.09 7.03 16 18 O -0.53 -9.83 15.70 5.56 0.09 -9.74 16 19 C -0.08 -0.80 5.97 -29.03 -0.17 -0.98 16 20 C 0.18 2.28 5.37 -81.23 -0.44 1.84 16 21 N -0.43 -6.07 11.84 34.00 0.40 -5.66 16 22 S 0.19 2.27 23.86 -107.50 -2.56 -0.30 16 23 C -0.13 -1.51 6.71 -38.41 -0.26 -1.77 16 24 C -0.08 -0.70 10.02 -39.93 -0.40 -1.10 16 25 C -0.08 -0.58 10.01 -39.86 -0.40 -0.98 16 26 C -0.12 -0.91 9.92 -40.10 -0.40 -1.31 16 27 C -0.05 -0.42 9.72 -39.24 -0.38 -0.81 16 28 C -0.12 -1.38 6.04 -105.14 -0.64 -2.02 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 31 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 32 H 0.39 9.91 5.77 -40.82 -0.24 9.67 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.43 6.29 -51.93 -0.33 1.10 16 36 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 37 H 0.40 3.94 6.58 -40.82 -0.27 3.67 16 38 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.12 0.71 7.55 -51.93 -0.39 0.31 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.91 7.65 -52.49 -0.40 0.51 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -34.73 369.54 -9.99 -44.72 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.53 Total: 9.23 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.12 Total: -6.73 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.59 Total: -59.95 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.56 Total: -0.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.73 -9.99 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.985 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds