Wall clock time and date at job start Tue Mar 31 2020 18:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47252 * 2 1 4 4 N 1.46506 * 109.46851 * 119.99671 * 2 1 3 5 5 C 1.36928 * 119.99882 * 274.99723 * 4 2 1 6 6 H 1.07995 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31612 * 120.00087 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46674 * 120.00256 * 9 7 5 12 12 H 1.48490 * 109.47290 * 240.00013 * 9 7 5 13 13 C 1.52997 * 109.47091 * 239.99191 * 2 1 3 14 14 H 1.08999 * 109.47510 * 174.99952 * 13 2 1 15 15 C 1.53001 * 109.47278 * 295.00493 * 13 2 1 16 16 N 1.46507 * 109.46767 * 55.00408 * 13 2 1 17 17 C 1.34776 * 119.99631 * 154.99978 * 16 13 2 18 18 O 1.21281 * 120.00265 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99724 * 179.97438 * 17 16 13 20 20 C 1.50696 * 109.46959 * 179.97438 * 19 17 16 21 21 N 1.28730 * 121.08637 * 269.71710 * 20 19 17 22 22 S 1.69387 * 108.98872 * 180.27659 * 21 20 19 23 23 C 1.76517 * 96.11897 * 359.97438 * 22 21 20 24 24 C 1.38778 * 133.55816 * 179.97438 * 23 22 21 25 25 C 1.36720 * 119.75832 * 180.02562 * 24 23 22 26 26 C 1.38971 * 120.15279 * 0.02562 * 25 24 23 27 27 C 1.36045 * 121.15676 * 0.02562 * 26 25 24 28 28 C 1.40805 * 105.51752 * 0.02562 * 23 22 21 29 29 H 1.08998 * 109.46991 * 300.00875 * 1 2 3 30 30 H 1.09001 * 109.46610 * 59.99884 * 1 2 3 31 31 H 1.08993 * 109.47666 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99968 * 94.99610 * 4 2 1 33 33 H 0.96997 * 120.00113 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46791 * 179.97438 * 15 13 2 35 35 H 1.08997 * 109.47434 * 299.99854 * 15 13 2 36 36 H 1.08998 * 109.47283 * 60.00290 * 15 13 2 37 37 H 0.96995 * 120.00152 * 334.99513 * 16 13 2 38 38 H 1.09002 * 109.47028 * 60.00195 * 19 17 16 39 39 H 1.08994 * 109.47095 * 300.00023 * 19 17 16 40 40 H 1.08005 * 120.12012 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.92156 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.42200 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.89102 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0074 2.3757 6 1 1.8927 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9242 -1.9389 3.4504 9 14 2.7904 0.2703 5.1182 10 1 2.3765 1.6827 4.9207 11 1 1.9291 -0.3574 6.1524 12 1 4.2071 0.2264 5.5607 13 6 2.0400 -0.7214 -1.2491 14 1 3.1263 -0.6445 -1.2951 15 6 1.6352 -2.1956 -1.1877 16 7 1.4559 -0.1038 -2.4423 17 6 2.0913 -0.1941 -3.6275 18 8 3.1469 -0.7862 -3.7061 19 6 1.4901 0.4407 -4.8550 20 6 2.3908 0.1974 -6.0385 21 7 3.3251 1.0283 -6.3447 22 16 4.1370 0.4627 -7.7194 23 6 3.1700 -1.0003 -7.9204 24 6 3.1898 -2.0411 -8.8382 25 6 2.2858 -3.0608 -8.7274 26 6 1.3500 -3.0555 -7.7001 27 6 1.3104 -2.0458 -6.7892 28 6 2.2295 -0.9771 -6.8728 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2489 -1.6318 1.1528 33 1 3.2475 -2.3961 4.2424 34 1 1.9981 -2.7094 -2.0779 35 1 2.0697 -2.6551 -0.3000 36 1 0.5489 -2.2725 -1.1419 37 1 0.6118 0.3699 -2.3794 38 1 1.3839 1.5135 -4.6943 39 1 0.5105 0.0033 -5.0475 40 1 3.9161 -2.0451 -9.6376 41 1 2.2985 -3.8719 -9.4405 42 1 0.6411 -3.8667 -7.6239 43 1 0.5742 -2.0621 -5.9992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:35 Heat of formation + Delta-G solvation = 1.778945 kcal Electronic energy + Delta-G solvation = -25463.411713 eV Core-core repulsion = 21827.099470 eV Total energy + Delta-G solvation = -3636.312244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43001 -40.51282 -38.55697 -37.61027 -35.59303 -33.67743 -32.43659 -31.67048 -31.44495 -30.21362 -29.75007 -26.15805 -25.26872 -24.41261 -23.81913 -22.29903 -20.96015 -20.56551 -19.55397 -19.45561 -18.33295 -17.41426 -17.05726 -16.64889 -16.28779 -16.25328 -15.99548 -15.91759 -15.52873 -15.23461 -14.99186 -14.81651 -14.44656 -14.35599 -13.94236 -13.58082 -13.25357 -13.08125 -13.06954 -12.99898 -12.85027 -12.82181 -12.63175 -12.59501 -12.08030 -11.99805 -11.78382 -11.66434 -11.61860 -11.56504 -11.07467 -10.96296 -10.77127 -10.10148 -9.96549 -9.02784 -8.94964 -7.94099 -5.22464 -0.52220 0.20277 0.37117 0.71279 1.01577 1.47420 1.48509 1.57890 1.60415 2.18664 2.57824 2.67238 3.18955 3.40156 3.45326 3.74492 3.89421 3.98760 4.02295 4.07432 4.10169 4.24027 4.30963 4.35261 4.37496 4.47920 4.63202 4.65567 4.73919 4.91227 4.93352 5.00066 5.03167 5.07363 5.23295 5.26747 5.29656 5.43119 5.50156 5.54328 5.56992 5.67766 5.84513 6.28613 6.56289 7.26052 7.35032 8.10109 8.32433 9.29734 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.002293 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.710998 B =12205.581121 C =12589.229280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.044 0.956 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.298 1.298 13 C 0.151 3.849 14 H 0.049 0.951 15 C -0.147 4.147 16 N -0.700 5.700 17 C 0.518 3.482 18 O -0.582 6.582 19 C -0.074 4.074 20 C 0.177 3.823 21 N -0.469 5.469 22 S 0.153 5.847 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.073 4.073 26 C -0.122 4.122 27 C -0.056 4.056 28 C -0.147 4.147 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.418 0.582 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 -0.175 -28.736 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.062 0.938 4 N -0.378 5.378 5 C -0.367 4.367 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.800 3.200 10 H -0.189 1.189 11 H -0.220 1.220 12 H -0.226 1.226 13 C 0.045 3.955 14 H 0.067 0.933 15 C -0.206 4.206 16 N -0.355 5.355 17 C 0.304 3.696 18 O -0.462 6.462 19 C -0.118 4.118 20 C -0.013 4.013 21 N -0.280 5.280 22 S 0.309 5.691 23 C -0.270 4.270 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.142 4.142 27 C -0.078 4.078 28 C -0.158 4.158 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.257 0.743 38 H 0.157 0.843 39 H 0.181 0.819 40 H 0.168 0.832 41 H 0.188 0.812 42 H 0.183 0.817 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.497 1.366 -28.929 29.916 hybrid contribution -0.557 -0.848 1.693 1.974 sum -8.054 0.518 -27.236 28.406 Atomic orbital electron populations 1.22352 0.96100 1.01834 1.01399 1.20555 0.94221 0.94694 0.84984 0.93813 1.42677 1.78681 1.10540 1.05863 1.19640 1.34760 0.94233 0.88073 0.90479 1.25531 1.03036 0.96898 1.01450 1.69815 1.52699 1.10216 1.29334 0.85111 0.76591 0.78286 0.80011 1.18949 1.22011 1.22565 1.20853 0.97017 0.93350 0.84327 0.93313 1.22009 1.02602 0.95044 1.00926 1.45896 1.26303 1.56461 1.06791 1.20725 0.84323 0.79486 0.85050 1.90752 1.24529 1.44740 1.86150 1.20660 0.99107 1.05890 0.86139 1.22296 0.93322 0.89736 0.95964 1.75681 1.11631 1.28604 1.12111 1.84672 1.40898 1.15795 1.27768 1.23726 1.00476 1.01583 1.01179 1.20376 1.01080 0.92144 0.98172 1.21550 0.92594 0.97465 0.97882 1.21255 0.99817 0.98889 0.94206 1.21059 0.96458 0.91029 0.99238 1.20348 1.00955 0.98022 0.96463 0.94015 0.89946 0.92715 0.78985 0.94105 0.92982 0.93368 0.90234 0.74251 0.84251 0.81853 0.83179 0.81199 0.81717 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.01 71.98 0.65 -3.92 16 2 C 0.16 6.03 2.93 44.99 0.13 6.16 16 3 H 0.04 1.67 8.08 -2.39 -0.02 1.66 16 4 N -0.74 -35.99 5.03 -322.94 -1.63 -37.62 16 5 C -0.24 -12.81 9.93 84.04 0.83 -11.98 16 6 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 8 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 9 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 13 C 0.15 4.99 2.62 44.99 0.12 5.10 16 14 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 15 C -0.15 -4.74 9.00 71.98 0.65 -4.10 16 16 N -0.70 -16.45 4.99 -442.51 -2.21 -18.65 16 17 C 0.52 13.49 7.79 87.66 0.68 14.17 16 18 O -0.58 -21.77 15.70 -3.03 -0.05 -21.82 16 19 C -0.07 -1.26 5.97 29.10 0.17 -1.09 16 20 C 0.18 4.30 5.37 44.74 0.24 4.54 16 21 N -0.47 -13.63 11.84 -46.34 -0.55 -14.18 16 22 S 0.15 3.93 23.86 -56.49 -1.35 2.58 16 23 C -0.15 -3.32 6.71 23.03 0.15 -3.16 16 24 C -0.09 -1.46 10.02 22.04 0.22 -1.24 16 25 C -0.07 -0.76 10.01 22.09 0.22 -0.54 16 26 C -0.12 -1.32 9.92 21.94 0.22 -1.10 16 27 C -0.06 -0.84 9.72 22.49 0.22 -0.62 16 28 C -0.15 -3.21 6.04 -20.20 -0.12 -3.33 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.58 6.29 -2.39 -0.02 1.56 16 31 H 0.05 1.60 6.57 -2.39 -0.02 1.59 16 32 H 0.38 19.85 5.77 -92.71 -0.54 19.32 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.05 1.84 6.29 -2.39 -0.02 1.82 16 36 H 0.08 2.17 6.57 -2.39 -0.02 2.15 16 37 H 0.42 6.51 6.58 -92.71 -0.61 5.91 16 38 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.16 1.22 7.55 -2.39 -0.02 1.20 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 42 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.15 1.51 7.65 -2.91 -0.02 1.49 16 Total: -1.00 -80.43 369.54 1.30 -79.12 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.09 Total: 26.51 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.85 Total: -5.03 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -4.10 Total: -129.51 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.35 Total: 2.58 kcal Total: -80.43 1.30 -79.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.902 kcal (2) G-P(sol) polarization free energy of solvation -80.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds