Wall clock time and date at job start Tue Mar 31 2020 18:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 N 1.46505 * 109.46958 * 119.99818 * 2 1 3 5 5 C 1.36936 * 119.99707 * 275.00012 * 4 2 1 6 6 H 1.07991 * 120.00699 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99456 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99686 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00230 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47050 * 89.99866 * 9 7 5 11 11 H 1.48496 * 109.47544 * 209.99932 * 9 7 5 12 12 H 1.48500 * 109.47369 * 329.99852 * 9 7 5 13 13 C 1.52999 * 109.47628 * 240.00203 * 2 1 3 14 14 H 1.09002 * 109.46716 * 300.00030 * 13 2 1 15 15 C 1.52997 * 109.47317 * 180.02562 * 13 2 1 16 16 N 1.46500 * 109.46944 * 59.99681 * 13 2 1 17 17 C 1.34780 * 119.99910 * 205.00356 * 16 13 2 18 18 O 1.21281 * 119.99723 * 0.02562 * 17 16 13 19 19 C 1.50693 * 120.00182 * 180.02562 * 17 16 13 20 20 C 1.50699 * 109.47318 * 179.97438 * 19 17 16 21 21 N 1.28733 * 121.08340 * 90.02280 * 20 19 17 22 22 S 1.69388 * 108.98571 * 180.02562 * 21 20 19 23 23 C 1.76515 * 96.11968 * 359.97438 * 22 21 20 24 24 C 1.38783 * 133.55957 * 180.02562 * 23 22 21 25 25 C 1.36710 * 119.75856 * 179.97438 * 24 23 22 26 26 C 1.38974 * 120.15187 * 359.97438 * 25 24 23 27 27 C 1.36036 * 121.16381 * 0.02562 * 26 25 24 28 28 C 1.40818 * 105.51593 * 359.74438 * 23 22 21 29 29 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 31 31 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 32 32 H 0.96998 * 120.00130 * 95.00452 * 4 2 1 33 33 H 0.97010 * 119.99671 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47153 * 299.99641 * 15 13 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 13 2 36 36 H 1.09004 * 109.47261 * 59.99813 * 15 13 2 37 37 H 0.96994 * 119.99975 * 25.00733 * 16 13 2 38 38 H 1.09007 * 109.46680 * 299.99959 * 19 17 16 39 39 H 1.09000 * 109.47439 * 59.99224 * 19 17 16 40 40 H 1.08000 * 120.11781 * 359.95451 * 24 23 22 41 41 H 1.08009 * 119.92618 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.41528 * 180.02562 * 26 25 24 43 43 H 1.07988 * 119.89748 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0403 2.4244 7 6 2.6113 -0.6619 3.5093 8 7 2.7364 -0.0054 4.6432 9 14 3.0555 -2.4743 3.4255 10 1 4.4884 -2.6165 3.0623 11 1 2.8153 -3.1046 4.7484 12 1 2.2160 -3.1429 2.3991 13 6 2.0401 -0.7212 -1.2492 14 1 1.6768 -1.7489 -1.2492 15 6 3.5701 -0.7217 -1.2488 16 7 1.5518 -0.0306 -2.4454 17 6 1.4231 -0.7029 -3.6064 18 8 1.7112 -1.8798 -3.6607 19 6 0.9213 0.0075 -4.8369 20 6 0.8712 -0.9607 -5.9907 21 7 -0.1867 -1.6537 -6.2313 22 16 0.0919 -2.6326 -7.5852 23 6 1.7471 -2.0906 -7.8719 24 6 2.7091 -2.4143 -8.8185 25 6 3.9327 -1.8061 -8.7778 26 6 4.2129 -0.8666 -7.7929 27 6 3.2864 -0.5329 -6.8544 28 6 2.0103 -1.1372 -6.8695 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.0591 -0.4629 5.4355 34 1 3.9338 0.3059 -1.2486 35 1 3.9335 -1.2359 -2.1386 36 1 3.9331 -1.2358 -0.3588 37 1 1.3211 0.9105 -2.4018 38 1 -0.0779 0.4000 -4.6478 39 1 1.5941 0.8294 -5.0818 40 1 2.4918 -3.1443 -9.5842 41 1 4.6835 -2.0563 -9.5129 42 1 5.1834 -0.3931 -7.7721 43 1 3.5258 0.2002 -6.0984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329201900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:40 Heat of formation + Delta-G solvation = 24.893802 kcal Electronic energy + Delta-G solvation = -25534.465848 eV Core-core repulsion = 21899.155940 eV Total energy + Delta-G solvation = -3635.309908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.57351 -39.58302 -37.35059 -36.60609 -34.08131 -32.12208 -31.65732 -30.87281 -30.66895 -29.14394 -28.91211 -24.15195 -23.88394 -23.33038 -22.70853 -21.04057 -20.34465 -19.77497 -18.85715 -17.93611 -17.16510 -16.75600 -16.12240 -15.62171 -15.40997 -15.24261 -14.68141 -14.56656 -14.30728 -14.03646 -13.76666 -13.59104 -13.50872 -12.95781 -12.72680 -12.52291 -12.38829 -12.30745 -12.09323 -11.98958 -11.85936 -11.38663 -11.13061 -11.09911 -10.93128 -10.80419 -10.78987 -10.32529 -10.22308 -9.99189 -9.85800 -9.61712 -9.31748 -9.10153 -8.87834 -8.17751 -7.33118 -5.80813 -3.17210 0.17074 0.80309 1.12652 1.50430 1.75961 2.59316 3.11754 3.32347 3.36993 3.40901 3.45197 3.91080 4.11316 4.47890 4.54058 4.56573 4.75597 4.79637 4.87904 4.90451 5.07988 5.13086 5.24045 5.36071 5.39813 5.46050 5.61215 5.64979 5.68068 5.80040 5.97853 5.98696 6.04419 6.22140 6.25694 6.26294 6.35813 6.38640 6.47595 6.63494 6.76864 6.91488 7.51801 7.93257 8.21331 8.37629 9.15069 9.87791 10.06549 11.37149 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.002463 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.567923 B =11363.564380 C =11738.457544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 H 0.060 0.940 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.133 3.867 14 H 0.084 0.916 15 C -0.154 4.154 16 N -0.714 5.714 17 C 0.519 3.481 18 O -0.531 6.531 19 C -0.082 4.082 20 C 0.182 3.818 21 N -0.429 5.429 22 S 0.187 5.813 23 C -0.134 4.134 24 C -0.082 4.082 25 C -0.083 4.083 26 C -0.124 4.124 27 C -0.047 4.047 28 C -0.121 4.121 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 1.259 -30.279 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.078 0.922 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.028 3.972 14 H 0.102 0.898 15 C -0.212 4.212 16 N -0.366 5.366 17 C 0.302 3.698 18 O -0.407 6.407 19 C -0.127 4.127 20 C -0.009 4.009 21 N -0.240 5.240 22 S 0.343 5.657 23 C -0.254 4.254 24 C -0.105 4.105 25 C -0.105 4.105 26 C -0.144 4.144 27 C -0.069 4.069 28 C -0.132 4.132 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.235 0.765 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.550 -0.542 -30.242 30.287 hybrid contribution 1.654 -0.056 0.426 1.709 sum 0.104 -0.598 -29.817 29.823 Atomic orbital electron populations 1.22424 0.98525 1.01178 1.00408 1.20357 0.92296 0.95854 0.85088 0.92175 1.42663 1.79863 1.09365 1.06713 1.19005 1.37236 0.95505 0.85494 0.89119 1.24647 1.01287 0.97436 0.95530 1.69697 1.52437 1.35599 1.00250 0.86609 0.78569 0.86778 0.76954 1.20965 1.21713 1.20222 1.21367 0.94445 0.97623 0.83764 0.89831 1.22061 0.94892 1.02165 1.02076 1.45965 1.67061 1.14044 1.09486 1.20071 0.78191 0.87392 0.84097 1.90754 1.49462 1.15726 1.84787 1.20522 1.05699 0.96694 0.89741 1.21784 0.88300 0.95484 0.95295 1.75706 1.25683 1.10428 1.12133 1.84826 1.05858 1.47402 1.27644 1.23506 1.00661 1.01028 1.00253 1.19989 0.92163 1.00669 0.97698 1.21064 0.96095 0.95294 0.98079 1.20780 0.99828 0.98640 0.95177 1.20689 0.90277 0.98043 0.97905 1.20099 0.96225 1.00551 0.96358 0.93545 0.92122 0.94202 0.80468 0.93009 0.92484 0.93225 0.90777 0.76530 0.86215 0.86390 0.84912 0.84709 0.84906 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.33 37.16 0.35 -2.41 16 2 C 0.17 3.08 2.52 -67.93 -0.17 2.91 16 3 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.74 -16.75 4.23 -53.42 -0.23 -16.97 16 5 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 9 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 12 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 13 C 0.13 2.06 2.21 -67.93 -0.15 1.91 16 14 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -2.38 9.33 37.16 0.35 -2.03 16 16 N -0.71 -8.46 4.38 -53.81 -0.24 -8.70 16 17 C 0.52 6.66 7.79 -10.99 -0.09 6.58 16 18 O -0.53 -9.31 15.70 5.56 0.09 -9.22 16 19 C -0.08 -0.75 5.97 -29.04 -0.17 -0.92 16 20 C 0.18 2.17 5.37 -81.23 -0.44 1.73 16 21 N -0.43 -5.84 11.84 34.00 0.40 -5.44 16 22 S 0.19 2.20 23.86 -107.50 -2.56 -0.37 16 23 C -0.13 -1.45 6.71 -38.41 -0.26 -1.71 16 24 C -0.08 -0.67 10.02 -39.93 -0.40 -1.07 16 25 C -0.08 -0.55 10.00 -39.86 -0.40 -0.95 16 26 C -0.12 -0.86 9.92 -40.10 -0.40 -1.26 16 27 C -0.05 -0.40 9.72 -39.25 -0.38 -0.78 16 28 C -0.12 -1.33 6.04 -105.14 -0.64 -1.97 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.53 7.44 -51.93 -0.39 0.14 16 32 H 0.36 8.26 5.44 -40.82 -0.22 8.04 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.29 7.44 -51.93 -0.39 0.90 16 37 H 0.40 3.50 8.39 -40.82 -0.34 3.16 16 38 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.12 0.64 7.54 -51.93 -0.39 0.25 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 42 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 43 H 0.13 0.85 7.64 -52.49 -0.40 0.45 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -35.30 374.11 -9.80 -45.10 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.92 Total: 7.29 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.05 Total: -6.58 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.72 Total: -59.08 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.56 Total: -0.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.30 -9.80 -45.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.995 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds