Wall clock time and date at job start Tue Mar 31 2020 18:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 N 1.46505 * 109.46958 * 119.99818 * 2 1 3 5 5 C 1.36936 * 119.99707 * 275.00012 * 4 2 1 6 6 H 1.07991 * 120.00699 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99456 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99686 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00230 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47050 * 89.99866 * 9 7 5 11 11 H 1.48496 * 109.47544 * 209.99932 * 9 7 5 12 12 H 1.48500 * 109.47369 * 329.99852 * 9 7 5 13 13 C 1.52999 * 109.47628 * 240.00203 * 2 1 3 14 14 H 1.09002 * 109.46716 * 300.00030 * 13 2 1 15 15 C 1.52997 * 109.47317 * 180.02562 * 13 2 1 16 16 N 1.46500 * 109.46944 * 59.99681 * 13 2 1 17 17 C 1.34780 * 119.99910 * 205.00356 * 16 13 2 18 18 O 1.21281 * 119.99723 * 0.02562 * 17 16 13 19 19 C 1.50693 * 120.00182 * 180.02562 * 17 16 13 20 20 C 1.50699 * 109.47318 * 179.97438 * 19 17 16 21 21 N 1.28733 * 121.08340 * 90.02280 * 20 19 17 22 22 S 1.69388 * 108.98571 * 180.02562 * 21 20 19 23 23 C 1.76515 * 96.11968 * 359.97438 * 22 21 20 24 24 C 1.38783 * 133.55957 * 180.02562 * 23 22 21 25 25 C 1.36710 * 119.75856 * 179.97438 * 24 23 22 26 26 C 1.38974 * 120.15187 * 359.97438 * 25 24 23 27 27 C 1.36036 * 121.16381 * 0.02562 * 26 25 24 28 28 C 1.40818 * 105.51593 * 359.74438 * 23 22 21 29 29 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 31 31 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 32 32 H 0.96998 * 120.00130 * 95.00452 * 4 2 1 33 33 H 0.97010 * 119.99671 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47153 * 299.99641 * 15 13 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 13 2 36 36 H 1.09004 * 109.47261 * 59.99813 * 15 13 2 37 37 H 0.96994 * 119.99975 * 25.00733 * 16 13 2 38 38 H 1.09007 * 109.46680 * 299.99959 * 19 17 16 39 39 H 1.09000 * 109.47439 * 59.99224 * 19 17 16 40 40 H 1.08000 * 120.11781 * 359.95451 * 24 23 22 41 41 H 1.08009 * 119.92618 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.41528 * 180.02562 * 26 25 24 43 43 H 1.07988 * 119.89748 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0403 2.4244 7 6 2.6113 -0.6619 3.5093 8 7 2.7364 -0.0054 4.6432 9 14 3.0555 -2.4743 3.4255 10 1 4.4884 -2.6165 3.0623 11 1 2.8153 -3.1046 4.7484 12 1 2.2160 -3.1429 2.3991 13 6 2.0401 -0.7212 -1.2492 14 1 1.6768 -1.7489 -1.2492 15 6 3.5701 -0.7217 -1.2488 16 7 1.5518 -0.0306 -2.4454 17 6 1.4231 -0.7029 -3.6064 18 8 1.7112 -1.8798 -3.6607 19 6 0.9213 0.0075 -4.8369 20 6 0.8712 -0.9607 -5.9907 21 7 -0.1867 -1.6537 -6.2313 22 16 0.0919 -2.6326 -7.5852 23 6 1.7471 -2.0906 -7.8719 24 6 2.7091 -2.4143 -8.8185 25 6 3.9327 -1.8061 -8.7778 26 6 4.2129 -0.8666 -7.7929 27 6 3.2864 -0.5329 -6.8544 28 6 2.0103 -1.1372 -6.8695 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.0591 -0.4629 5.4355 34 1 3.9338 0.3059 -1.2486 35 1 3.9335 -1.2359 -2.1386 36 1 3.9331 -1.2358 -0.3588 37 1 1.3211 0.9105 -2.4018 38 1 -0.0779 0.4000 -4.6478 39 1 1.5941 0.8294 -5.0818 40 1 2.4918 -3.1443 -9.5842 41 1 4.6835 -2.0563 -9.5129 42 1 5.1834 -0.3931 -7.7721 43 1 3.5258 0.2002 -6.0984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:39 Heat of formation + Delta-G solvation = 1.133457 kcal Electronic energy + Delta-G solvation = -25535.496174 eV Core-core repulsion = 21899.155940 eV Total energy + Delta-G solvation = -3636.340234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42137 -40.49834 -38.51560 -37.61518 -35.64302 -33.76895 -32.52862 -31.83581 -31.45977 -30.53768 -30.19514 -25.70283 -24.96933 -24.16100 -23.73709 -22.11844 -21.66605 -20.81616 -19.80067 -19.55371 -18.25942 -17.43227 -17.26975 -16.59596 -16.24714 -16.22491 -15.99610 -15.85920 -15.44611 -15.08790 -14.81986 -14.79086 -14.57449 -14.36059 -14.20882 -13.86021 -13.41766 -13.18586 -13.07843 -13.06136 -12.86565 -12.79104 -12.61270 -12.57084 -12.30449 -12.10647 -11.80572 -11.78597 -11.61216 -11.46889 -11.09630 -11.01356 -10.77636 -10.12203 -9.97102 -9.31880 -8.95402 -8.00857 -5.33447 -0.52616 0.19715 0.36735 0.71188 1.01533 1.38872 1.39526 1.46196 1.60836 2.17139 2.48496 2.66107 3.18896 3.31370 3.45037 3.64626 3.72681 3.83549 4.00476 4.06380 4.17192 4.25038 4.31035 4.32650 4.36913 4.47792 4.59173 4.65814 4.76556 4.86461 4.92685 4.95032 5.01796 5.04373 5.17223 5.26234 5.31752 5.42690 5.48952 5.52636 5.54123 5.80017 5.83731 6.22966 6.56545 7.08101 7.25745 7.84283 8.01221 9.20301 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.002463 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.567923 B =11363.564380 C =11738.457544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 H 0.069 0.931 4 N -0.747 5.747 5 C -0.217 4.217 6 H 0.067 0.933 7 C -0.060 4.060 8 N -0.981 5.981 9 Si 0.942 3.058 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.260 1.260 13 C 0.147 3.853 14 H 0.060 0.940 15 C -0.148 4.148 16 N -0.699 5.699 17 C 0.522 3.478 18 O -0.581 6.581 19 C -0.075 4.075 20 C 0.178 3.822 21 N -0.468 5.468 22 S 0.153 5.847 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.073 4.073 26 C -0.123 4.123 27 C -0.055 4.055 28 C -0.147 4.147 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.362 0.638 33 H 0.256 0.744 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.420 0.580 38 H 0.140 0.860 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 2.084 -32.971 33.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 H 0.087 0.913 4 N -0.391 5.391 5 C -0.348 4.348 6 H 0.085 0.915 7 C -0.251 4.251 8 N -0.632 5.632 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.186 1.186 13 C 0.041 3.959 14 H 0.078 0.922 15 C -0.206 4.206 16 N -0.352 5.352 17 C 0.308 3.692 18 O -0.460 6.460 19 C -0.119 4.119 20 C -0.013 4.013 21 N -0.279 5.279 22 S 0.308 5.692 23 C -0.269 4.269 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.142 4.142 27 C -0.077 4.077 28 C -0.158 4.158 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.195 0.805 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.258 0.742 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.135 0.322 -33.000 33.002 hybrid contribution 1.267 -0.217 1.128 1.710 sum 1.132 0.105 -31.873 31.893 Atomic orbital electron populations 1.22308 0.97357 1.00748 1.01355 1.20557 0.92904 0.95994 0.84248 0.91336 1.42703 1.80039 1.09391 1.06941 1.18980 1.34432 0.94563 0.86838 0.91541 1.25345 1.02750 1.01627 0.95421 1.69854 1.54940 1.37376 1.01070 0.85597 0.78674 0.81920 0.76711 1.20345 1.22615 1.18552 1.20921 0.94487 0.96357 0.84128 0.92193 1.21986 0.94640 1.02792 1.01174 1.45713 1.66565 1.14797 1.08141 1.20620 0.76975 0.86770 0.84851 1.90747 1.51611 1.18094 1.85545 1.20657 1.07741 0.96644 0.86855 1.22288 0.88179 0.95041 0.95751 1.75689 1.27195 1.11775 1.13254 1.84694 1.07977 1.48332 1.28148 1.23728 1.00118 1.01631 1.01465 1.20371 0.92348 1.01399 0.97684 1.21544 0.95859 0.93916 0.98197 1.21250 1.00686 0.98075 0.94218 1.21051 0.89431 0.98347 0.98915 1.20354 0.97158 1.01623 0.96662 0.94651 0.94138 0.90287 0.80522 0.93478 0.91040 0.92848 0.92950 0.74247 0.84221 0.82025 0.83215 0.81271 0.81796 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.33 71.98 0.67 -4.32 16 2 C 0.17 5.78 2.52 44.99 0.11 5.89 16 3 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 4 N -0.75 -33.11 4.23 -322.93 -1.37 -34.47 16 5 C -0.22 -11.77 10.41 84.03 0.87 -10.90 16 6 H 0.07 3.89 8.06 -2.92 -0.02 3.86 16 7 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 8 N -0.98 -61.84 13.97 21.65 0.30 -61.54 16 9 Si 0.94 45.65 27.74 68.60 1.90 47.55 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 12 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 13 C 0.15 4.30 2.21 44.99 0.10 4.40 16 14 H 0.06 2.09 7.58 -2.39 -0.02 2.08 16 15 C -0.15 -4.29 9.33 71.98 0.67 -3.62 16 16 N -0.70 -14.50 4.38 -442.54 -1.94 -16.44 16 17 C 0.52 12.20 7.79 87.65 0.68 12.88 16 18 O -0.58 -19.84 15.70 -3.03 -0.05 -19.89 16 19 C -0.07 -1.15 5.97 29.10 0.17 -0.98 16 20 C 0.18 4.05 5.37 44.73 0.24 4.29 16 21 N -0.47 -12.89 11.84 -46.34 -0.55 -13.44 16 22 S 0.15 3.74 23.86 -56.49 -1.35 2.39 16 23 C -0.15 -3.14 6.71 23.03 0.15 -2.99 16 24 C -0.10 -1.38 10.02 22.04 0.22 -1.16 16 25 C -0.07 -0.71 10.00 22.09 0.22 -0.49 16 26 C -0.12 -1.23 9.92 21.93 0.22 -1.01 16 27 C -0.06 -0.78 9.72 22.49 0.22 -0.56 16 28 C -0.15 -3.03 6.04 -20.20 -0.12 -3.15 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.86 7.44 -2.39 -0.02 1.84 16 32 H 0.36 16.13 5.44 -92.71 -0.50 15.62 16 33 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.75 7.44 -2.38 -0.02 1.74 16 37 H 0.42 5.59 8.39 -92.71 -0.78 4.81 16 38 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.16 1.01 7.54 -2.39 -0.02 0.99 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 42 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 43 H 0.15 1.36 7.64 -2.92 -0.02 1.34 16 Total: -1.00 -80.44 374.11 1.56 -78.88 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.29 Total: 21.66 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.90 Total: -4.70 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -3.55 Total: -125.89 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.35 Total: 2.39 kcal Total: -80.44 1.56 -78.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.010 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds