Wall clock time and date at job start Tue Mar 31 2020 18:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46729 * 2 1 4 4 N 1.46494 * 109.47282 * 240.00001 * 2 1 3 5 5 C 1.36941 * 120.00122 * 85.00043 * 4 2 1 6 6 H 1.08000 * 119.99674 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99659 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99890 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46943 * 90.00634 * 9 7 5 11 11 H 1.48502 * 109.47113 * 210.00097 * 9 7 5 12 12 H 1.48497 * 109.47476 * 330.00673 * 9 7 5 13 13 C 1.53002 * 109.46975 * 119.99972 * 2 1 3 14 14 H 1.09004 * 109.46930 * 185.00249 * 13 2 1 15 15 C 1.52997 * 109.47143 * 65.00184 * 13 2 1 16 16 N 1.46506 * 109.47035 * 305.00019 * 13 2 1 17 17 C 1.34775 * 119.99693 * 204.99878 * 16 13 2 18 18 O 1.21274 * 120.00425 * 0.02562 * 17 16 13 19 19 C 1.50706 * 119.99887 * 180.02562 * 17 16 13 20 20 C 1.50698 * 109.47367 * 180.02562 * 19 17 16 21 21 N 1.28729 * 121.08467 * 90.02018 * 20 19 17 22 22 S 1.69391 * 108.98536 * 180.02562 * 21 20 19 23 23 C 1.76514 * 96.11879 * 0.02562 * 22 21 20 24 24 C 1.38783 * 133.55597 * 180.02562 * 23 22 21 25 25 C 1.36709 * 119.75702 * 179.97438 * 24 23 22 26 26 C 1.38971 * 120.15416 * 0.02562 * 25 24 23 27 27 C 1.36038 * 121.15837 * 359.97438 * 26 25 24 28 28 C 1.40809 * 105.51957 * 359.74162 * 23 22 21 29 29 H 1.09008 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47226 * 299.99547 * 1 2 3 31 31 H 1.09001 * 109.47239 * 60.00261 * 1 2 3 32 32 H 0.97000 * 120.00129 * 264.99761 * 4 2 1 33 33 H 0.97001 * 119.99398 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46832 * 179.97438 * 15 13 2 35 35 H 1.08996 * 109.46952 * 299.99863 * 15 13 2 36 36 H 1.09002 * 109.47153 * 60.00035 * 15 13 2 37 37 H 0.97000 * 120.00117 * 25.00230 * 16 13 2 38 38 H 1.08999 * 109.46660 * 300.00178 * 19 17 16 39 39 H 1.08994 * 109.46774 * 59.99884 * 19 17 16 40 40 H 1.08003 * 120.12177 * 359.95355 * 24 23 22 41 41 H 1.08005 * 119.92216 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.42366 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.89527 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0074 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.7376 -0.0051 -4.6429 9 14 3.0557 -2.4744 -3.4253 10 1 1.8583 -3.2928 -3.7443 11 1 4.1307 -2.7665 -4.4073 12 1 3.5311 -2.8048 -2.0579 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6443 1.2952 15 6 1.6353 -2.1955 1.1880 16 7 1.4558 -0.1036 2.4424 17 6 2.0912 -0.1938 3.6276 18 8 3.1467 -0.7858 3.7063 19 6 1.4900 0.4411 4.8551 20 6 2.3905 0.1979 6.0387 21 7 3.3280 1.0264 6.3418 22 16 4.1442 0.4575 7.7128 23 6 3.1746 -1.0034 7.9162 24 6 3.1957 -2.0452 8.8329 25 6 2.2890 -3.0626 8.7247 26 6 1.3497 -3.0547 7.7006 27 6 1.3094 -2.0446 6.7902 28 6 2.2264 -0.9743 6.8756 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 3.0603 -0.4626 -5.4350 34 1 1.9990 -2.7093 2.0778 35 1 0.5490 -2.2724 1.1421 36 1 2.0699 -2.6550 0.3003 37 1 0.6117 0.3702 2.3794 38 1 1.3836 1.5139 4.6941 39 1 0.5104 0.0037 5.0475 40 1 3.9259 -2.0523 9.6286 41 1 2.3032 -3.8749 9.4364 42 1 0.6386 -3.8642 7.6265 43 1 0.5705 -2.0588 6.0027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329201901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:44 Heat of formation + Delta-G solvation = 29.614161 kcal Electronic energy + Delta-G solvation = -25549.101751 eV Core-core repulsion = 21913.996533 eV Total energy + Delta-G solvation = -3635.105218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57739 -39.61133 -37.45406 -36.68461 -34.05854 -32.15583 -31.66269 -30.85710 -30.62427 -29.20120 -28.61190 -24.62915 -24.02220 -23.34716 -22.87295 -21.21175 -20.02762 -19.30906 -18.85559 -18.05672 -17.19730 -16.75433 -16.05752 -15.59736 -15.33575 -15.29641 -14.80633 -14.68977 -14.30552 -14.16398 -13.96997 -13.71154 -13.51072 -12.93421 -12.70589 -12.57199 -12.35875 -12.30983 -12.05975 -11.99080 -11.81652 -11.57336 -11.14500 -11.09738 -10.93203 -10.78502 -10.64705 -10.35687 -10.22161 -10.07062 -9.86625 -9.59901 -9.31658 -9.00109 -8.95602 -8.17287 -7.34373 -5.80688 -3.17365 0.17428 0.80206 1.13250 1.51088 1.76337 2.59618 3.12211 3.32802 3.35519 3.38141 3.43934 3.91369 4.11389 4.47801 4.54080 4.55842 4.75901 4.79583 4.87880 4.90382 5.08042 5.17372 5.24143 5.26738 5.36850 5.45773 5.53596 5.59891 5.65316 5.79848 5.87420 5.96831 5.98365 6.09969 6.21367 6.26198 6.28686 6.38705 6.41495 6.58999 6.70805 6.93960 7.51561 7.94299 8.21757 8.37867 9.15501 9.87775 10.06223 11.37355 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.002458 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.555893 B =11389.474913 C =11715.687663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.173 3.827 3 H 0.061 0.939 4 N -0.743 5.743 5 C -0.245 4.245 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.133 3.867 14 H 0.089 0.911 15 C -0.161 4.161 16 N -0.716 5.716 17 C 0.518 3.482 18 O -0.530 6.530 19 C -0.082 4.082 20 C 0.181 3.819 21 N -0.428 5.428 22 S 0.188 5.812 23 C -0.134 4.134 24 C -0.082 4.082 25 C -0.083 4.083 26 C -0.124 4.124 27 C -0.047 4.047 28 C -0.120 4.120 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -4.126 30.053 31.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.079 0.921 4 N -0.388 5.388 5 C -0.375 4.375 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.029 3.971 14 H 0.107 0.893 15 C -0.219 4.219 16 N -0.370 5.370 17 C 0.301 3.699 18 O -0.406 6.406 19 C -0.127 4.127 20 C -0.009 4.009 21 N -0.239 5.239 22 S 0.344 5.656 23 C -0.255 4.255 24 C -0.105 4.105 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.069 4.069 28 C -0.132 4.132 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.198 0.802 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.240 -2.594 30.154 30.561 hybrid contribution -1.243 -2.286 -0.517 2.654 sum -5.484 -4.880 29.636 30.532 Atomic orbital electron populations 1.22504 0.98744 1.01281 1.00352 1.20328 0.92389 0.95907 0.85090 0.92122 1.42795 1.79786 1.09559 1.06682 1.19044 1.37392 0.95693 0.85365 0.89098 1.24657 1.01189 0.97513 0.95562 1.69697 1.52403 1.35554 1.00263 0.86610 0.78243 0.86836 0.77214 1.20982 1.21612 1.20234 1.21353 0.99259 0.92659 0.83870 0.89284 1.22163 1.01740 0.96019 1.02013 1.46139 1.25908 1.56858 1.08056 1.20105 0.85144 0.80446 0.84185 1.90755 1.22098 1.42366 1.85388 1.20523 0.98123 1.04772 0.89247 1.21782 0.93821 0.89825 0.95488 1.75708 1.10258 1.26870 1.11037 1.84836 1.39224 1.13879 1.27658 1.23510 1.00387 1.01494 1.00081 1.19991 1.00007 0.92412 0.98074 1.21058 0.94086 0.97628 0.97795 1.20773 0.99653 0.98862 0.95157 1.20682 0.96630 0.91462 0.98175 1.20097 0.99624 0.97239 0.96247 0.92904 0.94469 0.91844 0.80237 0.92986 0.92766 0.92091 0.91418 0.76366 0.86187 0.86431 0.84901 0.84720 0.84940 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.01 37.16 0.33 -2.22 16 2 C 0.17 3.09 2.93 -67.93 -0.20 2.90 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.74 -16.92 4.84 -53.43 -0.26 -17.18 16 5 C -0.25 -6.74 10.41 -15.06 -0.16 -6.90 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 9 Si 0.88 21.92 27.74 -169.99 -4.71 17.20 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 13 C 0.13 2.10 2.62 -67.93 -0.18 1.92 16 14 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 15 C -0.16 -2.41 9.00 37.16 0.33 -2.08 16 16 N -0.72 -8.65 4.99 -53.80 -0.27 -8.92 16 17 C 0.52 6.76 7.79 -10.98 -0.09 6.68 16 18 O -0.53 -9.42 15.70 5.56 0.09 -9.33 16 19 C -0.08 -0.76 5.97 -29.03 -0.17 -0.93 16 20 C 0.18 2.19 5.37 -81.23 -0.44 1.75 16 21 N -0.43 -5.90 11.84 34.00 0.40 -5.50 16 22 S 0.19 2.23 23.86 -107.50 -2.56 -0.33 16 23 C -0.13 -1.46 6.71 -38.41 -0.26 -1.72 16 24 C -0.08 -0.67 10.02 -39.93 -0.40 -1.07 16 25 C -0.08 -0.55 10.00 -39.86 -0.40 -0.95 16 26 C -0.12 -0.86 9.92 -40.10 -0.40 -1.26 16 27 C -0.05 -0.40 9.72 -39.25 -0.38 -0.79 16 28 C -0.12 -1.33 6.04 -105.14 -0.64 -1.97 16 29 H 0.05 0.78 6.57 -51.92 -0.34 0.44 16 30 H 0.04 0.41 6.29 -51.93 -0.33 0.09 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.36 8.18 3.63 -40.82 -0.15 8.03 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 36 H 0.07 1.12 6.29 -51.93 -0.33 0.80 16 37 H 0.40 3.63 6.58 -40.82 -0.27 3.36 16 38 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.12 0.64 7.54 -51.93 -0.39 0.25 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.84 7.64 -52.49 -0.40 0.44 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -35.64 366.42 -9.63 -45.27 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.49 Total: 7.99 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.13 Total: -6.52 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.65 Total: -59.80 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.56 Total: -0.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.64 -9.63 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.888 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds