Wall clock time and date at job start Tue Mar 31 2020 18:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46729 * 2 1 4 4 N 1.46494 * 109.47282 * 240.00001 * 2 1 3 5 5 C 1.36941 * 120.00122 * 85.00043 * 4 2 1 6 6 H 1.08000 * 119.99674 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99659 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99890 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46943 * 90.00634 * 9 7 5 11 11 H 1.48502 * 109.47113 * 210.00097 * 9 7 5 12 12 H 1.48497 * 109.47476 * 330.00673 * 9 7 5 13 13 C 1.53002 * 109.46975 * 119.99972 * 2 1 3 14 14 H 1.09004 * 109.46930 * 185.00249 * 13 2 1 15 15 C 1.52997 * 109.47143 * 65.00184 * 13 2 1 16 16 N 1.46506 * 109.47035 * 305.00019 * 13 2 1 17 17 C 1.34775 * 119.99693 * 204.99878 * 16 13 2 18 18 O 1.21274 * 120.00425 * 0.02562 * 17 16 13 19 19 C 1.50706 * 119.99887 * 180.02562 * 17 16 13 20 20 C 1.50698 * 109.47367 * 180.02562 * 19 17 16 21 21 N 1.28729 * 121.08467 * 90.02018 * 20 19 17 22 22 S 1.69391 * 108.98536 * 180.02562 * 21 20 19 23 23 C 1.76514 * 96.11879 * 0.02562 * 22 21 20 24 24 C 1.38783 * 133.55597 * 180.02562 * 23 22 21 25 25 C 1.36709 * 119.75702 * 179.97438 * 24 23 22 26 26 C 1.38971 * 120.15416 * 0.02562 * 25 24 23 27 27 C 1.36038 * 121.15837 * 359.97438 * 26 25 24 28 28 C 1.40809 * 105.51957 * 359.74162 * 23 22 21 29 29 H 1.09008 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47226 * 299.99547 * 1 2 3 31 31 H 1.09001 * 109.47239 * 60.00261 * 1 2 3 32 32 H 0.97000 * 120.00129 * 264.99761 * 4 2 1 33 33 H 0.97001 * 119.99398 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46832 * 179.97438 * 15 13 2 35 35 H 1.08996 * 109.46952 * 299.99863 * 15 13 2 36 36 H 1.09002 * 109.47153 * 60.00035 * 15 13 2 37 37 H 0.97000 * 120.00117 * 25.00230 * 16 13 2 38 38 H 1.08999 * 109.46660 * 300.00178 * 19 17 16 39 39 H 1.08994 * 109.46774 * 59.99884 * 19 17 16 40 40 H 1.08003 * 120.12177 * 359.95355 * 24 23 22 41 41 H 1.08005 * 119.92216 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.42366 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.89527 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0074 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.7376 -0.0051 -4.6429 9 14 3.0557 -2.4744 -3.4253 10 1 1.8583 -3.2928 -3.7443 11 1 4.1307 -2.7665 -4.4073 12 1 3.5311 -2.8048 -2.0579 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6443 1.2952 15 6 1.6353 -2.1955 1.1880 16 7 1.4558 -0.1036 2.4424 17 6 2.0912 -0.1938 3.6276 18 8 3.1467 -0.7858 3.7063 19 6 1.4900 0.4411 4.8551 20 6 2.3905 0.1979 6.0387 21 7 3.3280 1.0264 6.3418 22 16 4.1442 0.4575 7.7128 23 6 3.1746 -1.0034 7.9162 24 6 3.1957 -2.0452 8.8329 25 6 2.2890 -3.0626 8.7247 26 6 1.3497 -3.0547 7.7006 27 6 1.3094 -2.0446 6.7902 28 6 2.2264 -0.9743 6.8756 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 3.0603 -0.4626 -5.4350 34 1 1.9990 -2.7093 2.0778 35 1 0.5490 -2.2724 1.1421 36 1 2.0699 -2.6550 0.3003 37 1 0.6117 0.3702 2.3794 38 1 1.3836 1.5139 4.6941 39 1 0.5104 0.0037 5.0475 40 1 3.9259 -2.0523 9.6286 41 1 2.3032 -3.8749 9.4364 42 1 0.6386 -3.8642 7.6265 43 1 0.5705 -2.0588 6.0027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:43 Heat of formation + Delta-G solvation = 4.836750 kcal Electronic energy + Delta-G solvation = -25550.176180 eV Core-core repulsion = 21913.996533 eV Total energy + Delta-G solvation = -3636.179647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44613 -40.53556 -38.66202 -37.63569 -35.65794 -33.80221 -32.51783 -31.84120 -31.46248 -30.48550 -29.90024 -26.09800 -25.14392 -24.34851 -23.80779 -22.27967 -20.96972 -20.73066 -19.91198 -19.55718 -18.32738 -17.42024 -17.11550 -16.72495 -16.31062 -16.24319 -16.03289 -15.89826 -15.53990 -15.41418 -14.96539 -14.80778 -14.52297 -14.39631 -14.03398 -13.75142 -13.36928 -13.16606 -13.11756 -13.08242 -12.87733 -12.85511 -12.62192 -12.59679 -12.24773 -11.87912 -11.79429 -11.78075 -11.63149 -11.58738 -11.09166 -11.00009 -10.78039 -10.12557 -9.97156 -9.34931 -8.95833 -8.02791 -5.36247 -0.52543 0.19919 0.36574 0.70937 1.01218 1.36549 1.39544 1.46144 1.58890 2.16834 2.47310 2.66319 3.18315 3.29026 3.44763 3.63997 3.73725 3.84695 3.99884 4.04204 4.07099 4.23529 4.29588 4.30627 4.37113 4.47517 4.59457 4.64405 4.68375 4.86828 4.92938 4.95694 5.00861 5.05040 5.17197 5.26262 5.26663 5.42741 5.48643 5.53980 5.64468 5.77772 5.84090 6.21092 6.54256 7.07087 7.23997 7.82852 8.00464 9.18598 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.002458 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.555893 B =11389.474913 C =11715.687663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 H 0.044 0.956 4 N -0.749 5.749 5 C -0.226 4.226 6 H 0.060 0.940 7 C -0.063 4.063 8 N -0.983 5.983 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.298 1.298 12 H -0.257 1.257 13 C 0.146 3.854 14 H 0.054 0.946 15 C -0.155 4.155 16 N -0.701 5.701 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.075 4.075 20 C 0.177 3.823 21 N -0.470 5.470 22 S 0.152 5.848 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.073 4.073 26 C -0.122 4.122 27 C -0.055 4.055 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.366 0.634 33 H 0.257 0.743 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.419 0.581 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 -6.717 32.665 34.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.062 0.938 4 N -0.395 5.395 5 C -0.357 4.357 6 H 0.078 0.922 7 C -0.255 4.255 8 N -0.634 5.634 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.225 1.225 12 H -0.181 1.181 13 C 0.040 3.960 14 H 0.072 0.928 15 C -0.213 4.213 16 N -0.355 5.355 17 C 0.306 3.694 18 O -0.460 6.460 19 C -0.119 4.119 20 C -0.013 4.013 21 N -0.281 5.281 22 S 0.307 5.693 23 C -0.269 4.269 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.142 4.142 27 C -0.077 4.077 28 C -0.158 4.158 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.258 0.742 38 H 0.156 0.844 39 H 0.182 0.818 40 H 0.167 0.833 41 H 0.188 0.812 42 H 0.183 0.817 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.935 -5.163 32.834 33.953 hybrid contribution -0.477 -1.468 -1.206 1.959 sum -7.411 -6.630 31.627 33.154 Atomic orbital electron populations 1.22345 0.95651 1.02345 1.01514 1.20524 0.94416 0.94816 0.84313 0.93777 1.42817 1.80184 1.09733 1.06716 1.19008 1.35067 0.94573 0.87027 0.92207 1.25444 1.02399 1.02319 0.95302 1.69874 1.54743 1.37588 1.01155 0.85530 0.77937 0.81251 0.77810 1.19800 1.22530 1.18146 1.20903 0.97413 0.93504 0.84184 0.92762 1.22102 1.03163 0.94713 1.01297 1.45875 1.26358 1.56552 1.06728 1.20685 0.84292 0.79450 0.85010 1.90747 1.24416 1.44705 1.86144 1.20663 0.99154 1.05882 0.86186 1.22302 0.93290 0.89762 0.95946 1.75694 1.11633 1.28553 1.12198 1.84702 1.40562 1.15870 1.28138 1.23727 1.00375 1.01530 1.01312 1.20372 1.01115 0.92188 0.98153 1.21547 0.92594 0.97460 0.97895 1.21255 0.99771 0.98957 0.94183 1.21060 0.96487 0.90897 0.99236 1.20350 1.00898 0.98012 0.96521 0.91833 0.89743 0.94336 0.79869 0.93399 0.92470 0.89640 0.93134 0.74182 0.84363 0.81768 0.83258 0.81248 0.81678 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 9.01 71.98 0.65 -3.71 16 2 C 0.17 5.81 2.93 44.99 0.13 5.94 16 3 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 4 N -0.75 -33.73 4.84 -322.94 -1.56 -35.29 16 5 C -0.23 -12.63 10.41 84.03 0.87 -11.75 16 6 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 8 N -0.98 -62.98 13.97 21.65 0.30 -62.67 16 9 Si 0.95 45.50 27.74 68.60 1.90 47.41 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 12 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 13 C 0.15 4.38 2.62 44.99 0.12 4.49 16 14 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 15 C -0.15 -4.22 9.00 71.98 0.65 -3.57 16 16 N -0.70 -14.97 4.99 -442.52 -2.21 -17.18 16 17 C 0.52 12.54 7.79 87.66 0.68 13.22 16 18 O -0.58 -20.40 15.70 -3.01 -0.05 -20.45 16 19 C -0.07 -1.18 5.97 29.10 0.17 -1.01 16 20 C 0.18 4.11 5.37 44.74 0.24 4.35 16 21 N -0.47 -13.28 11.84 -46.34 -0.55 -13.83 16 22 S 0.15 3.79 23.86 -56.49 -1.35 2.44 16 23 C -0.15 -3.17 6.71 23.03 0.15 -3.02 16 24 C -0.10 -1.39 10.02 22.04 0.22 -1.16 16 25 C -0.07 -0.69 10.00 22.09 0.22 -0.47 16 26 C -0.12 -1.17 9.92 21.93 0.22 -0.95 16 27 C -0.05 -0.75 9.72 22.49 0.22 -0.53 16 28 C -0.15 -3.03 6.04 -20.20 -0.12 -3.16 16 29 H 0.06 1.63 6.57 -2.38 -0.02 1.62 16 30 H 0.08 1.50 6.29 -2.39 -0.02 1.48 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.37 16.02 3.63 -92.71 -0.34 15.68 16 33 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.90 6.57 -2.39 -0.02 1.89 16 36 H 0.05 1.56 6.29 -2.39 -0.02 1.55 16 37 H 0.42 5.79 6.58 -92.71 -0.61 5.18 16 38 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.16 1.00 7.54 -2.39 -0.02 0.98 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 43 H 0.15 1.27 7.64 -2.91 -0.02 1.25 16 Total: -1.00 -83.34 366.42 1.44 -81.90 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.05 Total: 22.24 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 4.89 Total: -4.57 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -4.02 Total: -128.98 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.35 Total: 2.44 kcal Total: -83.34 1.44 -81.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.741 kcal (2) G-P(sol) polarization free energy of solvation -83.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds