Wall clock time and date at job start Tue Mar 31 2020 18:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46937 * 179.97438 * 7 5 4 9 9 N 1.28725 * 121.08823 * 269.71147 * 8 7 5 10 10 S 1.69384 * 108.98885 * 179.90319 * 9 8 7 11 11 C 1.76519 * 96.11844 * 0.31726 * 10 9 8 12 12 C 1.38781 * 133.55615 * 179.82689 * 11 10 9 13 13 C 1.36713 * 119.75728 * 179.97438 * 12 11 10 14 14 C 1.38974 * 120.15138 * 0.02562 * 13 12 11 15 15 C 1.36035 * 121.15791 * 0.02562 * 14 13 12 16 16 C 1.40799 * 105.51757 * 359.82615 * 11 10 9 17 17 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 18 18 H 1.09002 * 109.47194 * 300.00164 * 17 2 1 19 19 C 1.52995 * 109.46864 * 179.97438 * 17 2 1 20 20 N 1.46499 * 109.46824 * 59.99935 * 17 2 1 21 21 C 1.36935 * 119.99926 * 204.99960 * 20 17 2 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 17 23 23 C 1.38811 * 120.00369 * 179.73019 * 21 20 17 24 24 N 1.31617 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47050 * 59.99408 * 25 23 21 27 27 H 1.48496 * 109.47289 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46855 * 299.99389 * 25 23 21 29 29 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 30 30 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 32 32 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 33 33 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 34 34 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 35 35 H 1.08005 * 120.12133 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.92928 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.42176 * 179.97438 * 14 13 12 38 38 H 1.08004 * 119.89729 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47544 * 300.00188 * 19 17 2 40 40 H 1.09007 * 109.47281 * 60.00379 * 19 17 2 41 41 H 1.09003 * 109.47025 * 179.97438 * 19 17 2 42 42 H 0.97005 * 120.00261 * 25.00085 * 20 17 2 43 43 H 0.97004 * 120.00382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 6 2.7012 0.2401 4.7409 9 7 3.7609 0.9294 4.9834 10 16 3.4823 1.9114 6.3351 11 6 1.8272 1.3696 6.6233 12 6 0.8663 1.6933 7.5708 13 6 -0.3579 1.0861 7.5307 14 6 -0.6396 0.1475 6.5452 15 6 0.2865 -0.1869 5.6064 16 6 1.5607 0.4213 5.6172 17 6 2.0400 -0.7213 -1.2493 18 1 1.6767 -1.7490 -1.2492 19 6 3.5700 -0.7208 -1.2496 20 7 1.5516 -0.0307 -2.4454 21 6 1.4208 -0.7138 -3.6249 22 1 1.6780 -1.7617 -3.6735 23 6 0.9527 -0.0610 -4.7570 24 7 0.6342 1.2147 -4.6964 25 14 0.7735 -0.9930 -6.3659 26 1 -0.1770 -2.1191 -6.1823 27 1 0.2578 -0.0764 -7.4142 28 1 2.0969 -1.5247 -6.7799 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 1.9778 -1.5508 3.8325 34 1 3.6493 -1.1203 3.3978 35 1 1.0848 2.4224 8.3371 36 1 -1.1077 1.3356 8.2669 37 1 -1.6104 -0.3253 6.5247 38 1 0.0460 -0.9193 4.8500 39 1 3.9330 0.3070 -1.2498 40 1 3.9337 -1.2344 -0.3596 41 1 3.9333 -1.2350 -2.1393 42 1 1.3209 0.9105 -2.4019 43 1 0.3067 1.6709 -5.4874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329201902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:48 Heat of formation + Delta-G solvation = 21.011452 kcal Electronic energy + Delta-G solvation = -25451.989063 eV Core-core repulsion = 21816.510803 eV Total energy + Delta-G solvation = -3635.478260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51150 -39.49515 -37.24765 -36.47676 -33.95464 -32.07432 -31.59140 -30.80256 -30.52212 -29.00425 -28.36469 -24.08722 -23.97801 -23.30429 -22.76580 -21.05466 -20.19823 -19.67039 -18.81134 -17.48201 -17.12657 -16.70800 -15.98930 -15.54708 -15.29014 -15.16082 -14.71263 -14.54924 -14.25086 -13.83412 -13.68189 -13.50441 -13.34365 -13.08638 -12.64568 -12.44469 -12.32489 -12.20015 -11.94930 -11.82491 -11.69311 -11.19131 -11.05486 -10.96767 -10.83743 -10.74513 -10.69460 -10.26063 -10.17306 -9.93267 -9.83817 -9.63802 -9.27203 -9.03754 -8.79000 -8.13017 -7.00882 -5.78921 -3.08789 0.21803 0.84715 1.17350 1.55192 1.81061 2.68365 3.18946 3.39118 3.42102 3.47290 3.47959 3.96164 4.16093 4.52354 4.56794 4.60105 4.82813 4.85351 4.93105 4.94909 5.12566 5.26268 5.32456 5.47848 5.50459 5.66344 5.69893 5.73926 5.84297 5.88095 6.02930 6.09126 6.19204 6.30659 6.37435 6.41070 6.43246 6.50697 6.60059 6.79379 6.92618 7.01942 7.61906 7.66087 8.30849 8.38720 9.49807 10.05174 10.40053 11.43343 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.002294 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.788839 B =12203.355111 C =12721.377281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.085 0.915 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.530 6.530 7 C -0.082 4.082 8 C 0.182 3.818 9 N -0.429 5.429 10 S 0.186 5.814 11 C -0.134 4.134 12 C -0.082 4.082 13 C -0.083 4.083 14 C -0.124 4.124 15 C -0.047 4.047 16 C -0.120 4.120 17 C 0.169 3.831 18 H 0.051 0.949 19 C -0.165 4.165 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.398 0.602 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.054 0.946 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -5.374 27.310 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 H 0.103 0.897 4 N -0.366 5.366 5 C 0.301 3.699 6 O -0.406 6.406 7 C -0.127 4.127 8 C -0.008 4.008 9 N -0.239 5.239 10 S 0.342 5.658 11 C -0.255 4.255 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.144 4.144 15 C -0.069 4.069 16 C -0.132 4.132 17 C 0.059 3.941 18 H 0.069 0.931 19 C -0.225 4.225 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.232 0.768 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.220 0.780 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.872 -3.502 27.314 27.601 hybrid contribution -1.496 -1.416 -1.244 2.406 sum 0.377 -4.918 26.070 26.533 Atomic orbital electron populations 1.22044 0.94873 1.01731 1.02348 1.21363 0.94438 0.97627 0.83435 0.89733 1.46014 1.67016 1.13936 1.09629 1.20053 0.78309 0.87417 0.84094 1.90758 1.49418 1.15705 1.84748 1.20530 1.05613 0.96683 0.89849 1.21794 0.88227 0.95506 0.95295 1.75702 1.25687 1.10405 1.12150 1.84815 1.05898 1.47308 1.27783 1.23500 1.00687 1.01107 1.00164 1.19985 0.92167 1.00647 0.97712 1.21057 0.96079 0.95334 0.98093 1.20775 0.99784 0.98653 0.95214 1.20691 0.90334 0.98011 0.97882 1.20094 0.96235 1.00552 0.96273 1.20386 0.92100 0.95534 0.86103 0.93136 1.22454 0.99054 1.01143 0.99836 1.42290 1.78214 1.10692 1.04822 1.19135 1.36874 0.93881 0.87184 0.91211 1.24744 1.01969 0.95991 0.98077 1.69652 1.50319 1.08771 1.29129 0.86274 0.77747 0.78587 0.83578 1.21278 1.21713 1.21293 0.90111 0.93038 0.93503 0.76757 0.86478 0.86309 0.84926 0.84731 0.84926 0.85024 0.93435 0.94556 0.92641 0.78047 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.33 37.16 0.35 -2.20 16 2 C 0.14 2.26 2.21 -67.93 -0.15 2.11 16 3 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 4 N -0.71 -9.07 4.38 -53.80 -0.24 -9.30 16 5 C 0.52 7.05 7.79 -10.98 -0.09 6.96 16 6 O -0.53 -9.75 15.70 5.56 0.09 -9.67 16 7 C -0.08 -0.79 5.97 -29.03 -0.17 -0.97 16 8 C 0.18 2.27 5.37 -81.23 -0.44 1.83 16 9 N -0.43 -6.04 11.84 34.00 0.40 -5.63 16 10 S 0.19 2.26 23.86 -107.50 -2.56 -0.30 16 11 C -0.13 -1.51 6.71 -38.41 -0.26 -1.77 16 12 C -0.08 -0.70 10.02 -39.93 -0.40 -1.10 16 13 C -0.08 -0.58 10.01 -39.86 -0.40 -0.98 16 14 C -0.12 -0.91 9.92 -40.10 -0.40 -1.31 16 15 C -0.05 -0.42 9.72 -39.25 -0.38 -0.81 16 16 C -0.12 -1.38 6.04 -105.14 -0.64 -2.01 16 17 C 0.17 3.15 2.52 -67.93 -0.17 2.98 16 18 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 19 C -0.16 -2.87 9.33 37.15 0.35 -2.53 16 20 N -0.72 -17.26 4.43 -53.43 -0.24 -17.50 16 21 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 25 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.08 1.57 7.44 -51.93 -0.39 1.19 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.78 8.39 -40.82 -0.34 3.44 16 33 H 0.12 0.70 7.54 -51.93 -0.39 0.31 16 34 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.92 7.64 -52.48 -0.40 0.51 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.39 10.06 7.58 -40.82 -0.31 9.75 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -34.36 377.24 -10.16 -44.52 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.96 Total: 8.98 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.04 Total: -6.75 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.65 Total: -59.44 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.56 Total: -0.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.36 -10.16 -44.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.533 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds