Wall clock time and date at job start Tue Mar 31 2020 18:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46937 * 179.97438 * 7 5 4 9 9 N 1.28725 * 121.08823 * 269.71147 * 8 7 5 10 10 S 1.69384 * 108.98885 * 179.90319 * 9 8 7 11 11 C 1.76519 * 96.11844 * 0.31726 * 10 9 8 12 12 C 1.38781 * 133.55615 * 179.82689 * 11 10 9 13 13 C 1.36713 * 119.75728 * 179.97438 * 12 11 10 14 14 C 1.38974 * 120.15138 * 0.02562 * 13 12 11 15 15 C 1.36035 * 121.15791 * 0.02562 * 14 13 12 16 16 C 1.40799 * 105.51757 * 359.82615 * 11 10 9 17 17 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 18 18 H 1.09002 * 109.47194 * 300.00164 * 17 2 1 19 19 C 1.52995 * 109.46864 * 179.97438 * 17 2 1 20 20 N 1.46499 * 109.46824 * 59.99935 * 17 2 1 21 21 C 1.36935 * 119.99926 * 204.99960 * 20 17 2 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 17 23 23 C 1.38811 * 120.00369 * 179.73019 * 21 20 17 24 24 N 1.31617 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47050 * 59.99408 * 25 23 21 27 27 H 1.48496 * 109.47289 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46855 * 299.99389 * 25 23 21 29 29 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 30 30 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 32 32 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 33 33 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 34 34 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 35 35 H 1.08005 * 120.12133 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.92928 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.42176 * 179.97438 * 14 13 12 38 38 H 1.08004 * 119.89729 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47544 * 300.00188 * 19 17 2 40 40 H 1.09007 * 109.47281 * 60.00379 * 19 17 2 41 41 H 1.09003 * 109.47025 * 179.97438 * 19 17 2 42 42 H 0.97005 * 120.00261 * 25.00085 * 20 17 2 43 43 H 0.97004 * 120.00382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 6 2.7012 0.2401 4.7409 9 7 3.7609 0.9294 4.9834 10 16 3.4823 1.9114 6.3351 11 6 1.8272 1.3696 6.6233 12 6 0.8663 1.6933 7.5708 13 6 -0.3579 1.0861 7.5307 14 6 -0.6396 0.1475 6.5452 15 6 0.2865 -0.1869 5.6064 16 6 1.5607 0.4213 5.6172 17 6 2.0400 -0.7213 -1.2493 18 1 1.6767 -1.7490 -1.2492 19 6 3.5700 -0.7208 -1.2496 20 7 1.5516 -0.0307 -2.4454 21 6 1.4208 -0.7138 -3.6249 22 1 1.6780 -1.7617 -3.6735 23 6 0.9527 -0.0610 -4.7570 24 7 0.6342 1.2147 -4.6964 25 14 0.7735 -0.9930 -6.3659 26 1 -0.1770 -2.1191 -6.1823 27 1 0.2578 -0.0764 -7.4142 28 1 2.0969 -1.5247 -6.7799 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 1.9778 -1.5508 3.8325 34 1 3.6493 -1.1203 3.3978 35 1 1.0848 2.4224 8.3371 36 1 -1.1077 1.3356 8.2669 37 1 -1.6104 -0.3253 6.5247 38 1 0.0460 -0.9193 4.8500 39 1 3.9330 0.3070 -1.2498 40 1 3.9337 -1.2344 -0.3596 41 1 3.9333 -1.2350 -2.1393 42 1 1.3209 0.9105 -2.4019 43 1 0.3067 1.6709 -5.4874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:47 Heat of formation + Delta-G solvation = -1.708420 kcal Electronic energy + Delta-G solvation = -25452.974270 eV Core-core repulsion = 21816.510803 eV Total energy + Delta-G solvation = -3636.463467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40839 -40.47875 -38.41458 -37.58499 -35.57750 -33.64224 -32.45396 -31.71056 -31.44696 -30.19485 -30.06925 -25.90176 -24.98436 -24.20378 -23.76014 -22.14923 -21.54094 -20.75645 -19.55091 -19.34174 -18.26936 -17.41489 -17.14973 -16.61876 -16.28835 -16.22170 -15.99981 -15.64834 -15.31750 -15.14273 -14.92256 -14.73487 -14.56371 -14.34622 -14.05594 -13.56274 -13.32653 -13.12991 -13.06622 -12.92282 -12.85218 -12.69692 -12.60397 -12.54216 -12.23870 -12.19798 -11.78193 -11.72277 -11.60762 -11.44527 -11.07057 -10.95355 -10.76599 -10.09194 -9.96465 -9.00407 -8.94692 -7.90590 -5.19677 -0.52011 0.20267 0.37361 0.71565 1.02146 1.49756 1.52370 1.58217 1.62337 2.19019 2.60390 2.67523 3.19505 3.43508 3.45684 3.73306 3.84536 3.98220 4.04546 4.09035 4.21052 4.27101 4.31393 4.37468 4.38256 4.48211 4.61399 4.66216 4.81759 4.90509 4.93269 4.98804 5.03918 5.07245 5.20500 5.26742 5.34320 5.43114 5.51967 5.53007 5.54624 5.61205 5.84412 6.29965 6.58652 7.28156 7.36191 8.10187 8.32971 9.32851 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.002294 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.788839 B =12203.355111 C =12721.377281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.151 3.849 3 H 0.051 0.949 4 N -0.698 5.698 5 C 0.520 3.480 6 O -0.582 6.582 7 C -0.073 4.073 8 C 0.177 3.823 9 N -0.468 5.468 10 S 0.153 5.847 11 C -0.149 4.149 12 C -0.095 4.095 13 C -0.073 4.073 14 C -0.122 4.122 15 C -0.056 4.056 16 C -0.147 4.147 17 C 0.169 3.831 18 H 0.067 0.933 19 C -0.156 4.156 20 N -0.732 5.732 21 C -0.231 4.231 22 H 0.082 0.918 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.302 1.302 28 H -0.279 1.279 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.419 0.581 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.370 0.630 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -8.407 28.990 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.045 3.955 3 H 0.069 0.931 4 N -0.351 5.351 5 C 0.306 3.694 6 O -0.462 6.462 7 C -0.118 4.118 8 C -0.013 4.013 9 N -0.279 5.279 10 S 0.309 5.691 11 C -0.270 4.270 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.142 4.142 15 C -0.078 4.078 16 C -0.158 4.158 17 C 0.060 3.940 18 H 0.085 0.915 19 C -0.216 4.216 20 N -0.372 5.372 21 C -0.363 4.363 22 H 0.100 0.900 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.201 1.201 27 H -0.228 1.228 28 H -0.206 1.206 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.257 0.743 33 H 0.180 0.820 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.188 0.812 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.202 0.798 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.721 -6.625 29.034 29.789 hybrid contribution -1.200 -0.497 -1.615 2.072 sum -0.479 -7.122 27.419 28.333 Atomic orbital electron populations 1.21908 0.94854 1.02410 1.00774 1.20870 0.94269 0.96055 0.84288 0.93081 1.45722 1.66512 1.14729 1.08165 1.20672 0.77035 0.86785 0.84929 1.90752 1.51639 1.18235 1.85552 1.20654 1.07711 0.96625 0.86778 1.22299 0.88156 0.95104 0.95762 1.75680 1.27215 1.11736 1.13301 1.84674 1.08022 1.48211 1.28234 1.23725 1.00152 1.01701 1.01384 1.20374 0.92344 1.01368 0.97686 1.21545 0.95839 0.93916 0.98211 1.21250 1.00640 0.98081 0.94231 1.21054 0.89495 0.98342 0.98914 1.20351 0.97172 1.01671 0.96590 1.20579 0.92735 0.95816 0.84909 0.91458 1.22325 0.97775 1.00261 1.01235 1.42498 1.78444 1.10203 1.06042 1.19564 1.34496 0.94337 0.87922 0.90005 1.25548 1.03129 0.96831 1.01508 1.69828 1.52523 1.10496 1.29452 0.85241 0.77913 0.77306 0.79471 1.20090 1.22833 1.20556 0.93424 0.91091 0.93317 0.74274 0.81960 0.84205 0.83177 0.81217 0.81763 0.82954 0.95476 0.90484 0.93835 0.79822 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.33 71.98 0.67 -3.98 16 2 C 0.15 4.93 2.21 45.00 0.10 5.03 16 3 H 0.05 2.04 7.58 -2.39 -0.02 2.03 16 4 N -0.70 -16.00 4.38 -442.52 -1.94 -17.94 16 5 C 0.52 13.28 7.79 87.66 0.68 13.96 16 6 O -0.58 -21.51 15.70 -3.03 -0.05 -21.56 16 7 C -0.07 -1.23 5.97 29.10 0.17 -1.06 16 8 C 0.18 4.27 5.37 44.74 0.24 4.51 16 9 N -0.47 -13.48 11.84 -46.34 -0.55 -14.03 16 10 S 0.15 3.91 23.86 -56.49 -1.35 2.56 16 11 C -0.15 -3.31 6.71 23.03 0.15 -3.16 16 12 C -0.09 -1.46 10.02 22.04 0.22 -1.24 16 13 C -0.07 -0.77 10.01 22.09 0.22 -0.55 16 14 C -0.12 -1.34 9.92 21.93 0.22 -1.13 16 15 C -0.06 -0.85 9.72 22.49 0.22 -0.63 16 16 C -0.15 -3.21 6.04 -20.20 -0.12 -3.33 16 17 C 0.17 6.05 2.52 44.99 0.11 6.17 16 18 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 19 C -0.16 -5.20 9.33 71.98 0.67 -4.53 16 20 N -0.73 -35.42 4.43 -322.94 -1.43 -36.85 16 21 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 24 N -0.97 -59.49 13.06 21.65 0.28 -59.20 16 25 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 29 H 0.05 1.89 7.44 -2.39 -0.02 1.87 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.42 6.21 8.39 -92.71 -0.78 5.43 16 33 H 0.16 1.20 7.54 -2.39 -0.02 1.18 16 34 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 37 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 38 H 0.15 1.54 7.64 -2.91 -0.02 1.51 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.92 7.45 -2.38 -0.02 1.90 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.37 20.02 7.58 -92.70 -0.70 19.32 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -79.14 377.24 1.43 -77.71 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.43 Total: 27.24 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.86 Total: -5.33 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -3.64 Total: -128.02 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.35 Total: 2.56 kcal Total: -79.14 1.43 -77.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.006 kcal (2) G-P(sol) polarization free energy of solvation -79.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds